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Posted to issues@spark.apache.org by "Isaac Eliassi (Jira)" <ji...@apache.org> on 2022/06/26 15:49:00 UTC
[jira] [Created] (SPARK-39608) Upgrade to spark 3.3.0 is causing error "Cannot grow BufferHolder by size -179446840 because the size is negative"
Isaac Eliassi created SPARK-39608:
-------------------------------------
Summary: Upgrade to spark 3.3.0 is causing error "Cannot grow BufferHolder by size -179446840 because the size is negative"
Key: SPARK-39608
URL: https://issues.apache.org/jira/browse/SPARK-39608
Project: Spark
Issue Type: Bug
Components: Kubernetes
Affects Versions: 3.3.0
Reporter: Isaac Eliassi
Hi,
We recently upgraded to version 3.3.0.
The upgrade is causing the following error "Cannot grow BufferHolder by size -179446840 because the size is negative"
I can't find information on this on the internet, when reverting to spark 3.2.1 it works.
Full exception:
org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 36.0 failed 4 times, most recent failure: Lost task 1.3 in stage 36.0 (TID 2873) (172.24.214.133 executor 4): java.lang.IllegalArgumentException: Cannot grow BufferHolder by size -143657042 because the size is negative
at org.apache.spark.sql.catalyst.expressions.codegen.BufferHolder.grow(BufferHolder.java:67)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.grow(UnsafeWriter.java:63)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.write(UnsafeWriter.java:165)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.smj_consumeFullOuterJoinRow_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$2.hasNext(WholeStageCodegenExec.scala:779)
at org.apache.spark.sql.execution.columnar.DefaultCachedBatchSerializer$$anon$1.hasNext(InMemoryRelation.scala:118)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:460)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:223)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:302)
at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1508)
at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1435)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1499)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1322)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:376)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:327)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:52)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.failJobAndIndependentStages(DAGScheduler.scala:2672)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2(DAGScheduler.scala:2608)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$abortStage$2$adapted(DAGScheduler.scala:2607)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:2607)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1(DAGScheduler.scala:1182)
at org.apache.spark.scheduler.DAGScheduler.$anonfun$handleTaskSetFailed$1$adapted(DAGScheduler.scala:1182)
at scala.Option.foreach(Option.scala:407)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:1182)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2860)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2802)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2791)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:952)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2228)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2249)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2268)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2293)
at org.apache.spark.rdd.RDD.$anonfun$collect$1(RDD.scala:1021)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:406)
at org.apache.spark.rdd.RDD.collect(RDD.scala:1020)
at org.apache.spark.sql.execution.SparkPlan.executeCollect(SparkPlan.scala:424)
at org.apache.spark.sql.Dataset.$anonfun$count$1(Dataset.scala:3161)
at org.apache.spark.sql.Dataset.$anonfun$count$1$adapted(Dataset.scala:3160)
at org.apache.spark.sql.Dataset.$anonfun$withAction$2(Dataset.scala:3858)
at org.apache.spark.sql.execution.QueryExecution$.withInternalError(QueryExecution.scala:510)
at org.apache.spark.sql.Dataset.$anonfun$withAction$1(Dataset.scala:3856)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$6(SQLExecution.scala:109)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:169)
at org.apache.spark.sql.execution.SQLExecution$.$anonfun$withNewExecutionId$1(SQLExecution.scala:95)
at org.apache.spark.sql.SparkSession.withActive(SparkSession.scala:779)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:64)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3856)
at org.apache.spark.sql.Dataset.count(Dataset.scala:3160)
Caused by: java.lang.IllegalArgumentException: Cannot grow BufferHolder by size -143657042 because the size is negative
at org.apache.spark.sql.catalyst.expressions.codegen.BufferHolder.grow(BufferHolder.java:67)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.grow(UnsafeWriter.java:63)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.write(UnsafeWriter.java:165)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.smj_consumeFullOuterJoinRow_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$2.hasNext(WholeStageCodegenExec.scala:779)
at org.apache.spark.sql.execution.columnar.DefaultCachedBatchSerializer$$anon$1.hasNext(InMemoryRelation.scala:118)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:460)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:223)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:302)
at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1508)
at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1435)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1499)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1322)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:376)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:327)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:52)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
" errorMessage="Job aborted due to stage failure: Task 1 in stage 36.0 failed 4 times, most recent failure: Lost task 1.3 in stage 36.0 (TID 2873) (172.24.214.133 executor 4): java.lang.IllegalArgumentException: Cannot grow BufferHolder by size -143657042 because the size is negative
at org.apache.spark.sql.catalyst.expressions.codegen.BufferHolder.grow(BufferHolder.java:67)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.grow(UnsafeWriter.java:63)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.write(UnsafeWriter.java:165)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.smj_consumeFullOuterJoinRow_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$2.hasNext(WholeStageCodegenExec.scala:779)
at org.apache.spark.sql.execution.columnar.DefaultCachedBatchSerializer$$anon$1.hasNext(InMemoryRelation.scala:118)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:460)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:223)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:302)
at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1508)
at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1435)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1499)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1322)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:376)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:327)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:52)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Driver stacktrace:" exception.type="class org.apache.spark.SparkException" message="com.sap.mlr.spark.jobs.ModelBuilderMain.main:52 - org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 36.0 failed 4 times, most recent failure: Lost task 1.3 in stage 36.0 (TID 2873) (172.24.214.133 executor 4): java.lang.IllegalArgumentException: Cannot grow BufferHolder by size -143657042 because the size is negative
at org.apache.spark.sql.catalyst.expressions.codegen.BufferHolder.grow(BufferHolder.java:67)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.grow(UnsafeWriter.java:63)
at org.apache.spark.sql.catalyst.expressions.codegen.UnsafeWriter.write(UnsafeWriter.java:165)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.smj_consumeFullOuterJoinRow_0$(Unknown Source)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage24.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anon$2.hasNext(WholeStageCodegenExec.scala:779)
at org.apache.spark.sql.execution.columnar.DefaultCachedBatchSerializer$$anon$1.hasNext(InMemoryRelation.scala:118)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:460)
at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:223)
at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:302)
at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1508)
at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1435)
at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1499)
at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1322)
at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:376)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:327)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:52)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:365)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:329)
at org.apache.spark.shuffle.ShuffleWriteProcessor.write(ShuffleWriteProcessor.scala:59)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:52)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
BR,
Isaac.
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