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Posted to commits@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2018/01/31 06:00:25 UTC

Build failed in Jenkins: beam_PerformanceTests_TFRecordIOIT #83

See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/83/display/redirect?page=changes>

Changes:

[kedin] [SQL] Refactor Variance

[kedin] [Nexmark][SQL] Implement sql query 3

[tgroh] Add CoderTranslatorRegistrar

[chamikara] Updates PTransform overriding to create a new AppliedPTransform object

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Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam5 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/>
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Fetching changes from the remote Git repository
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Fetching upstream changes from https://github.com/apache/beam.git
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Checking out Revision 645e1b51e1c83ec4b0b54a774d6615624f3c42ed (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 645e1b51e1c83ec4b0b54a774d6615624f3c42ed
Commit message: "Merge pull request #4448: [SQL] Refactor Variance"
 > git rev-list 34d8bc9079a5a4b3d3a5476b2d4b48072be0dff4 # timeout=10
Cleaning workspace
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[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

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[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins2927773544539186127.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins5480544320425912715.sh
+ rm -rf .env
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins5577185747979399113.sh
+ virtualenv .env --system-site-packages
New python executable in .env/bin/python
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[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins6186452495235065801.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
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[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins3895282036698786580.sh
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    error in cryptography setup command: Invalid environment marker: python_version < '3'
    Complete output from command python setup.py egg_info:
    error in cryptography setup command: Invalid environment marker: python_version < '3'

----------------------------------------
Cleaning up...
Command python setup.py egg_info failed with error code 1 in <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/build/cryptography>
Storing debug log for failure in /home/jenkins/.pip/pip.log
Build step 'Execute shell' marked build as failure

Jenkins build is back to normal : beam_PerformanceTests_TFRecordIOIT #88

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/88/display/redirect>


Build failed in Jenkins: beam_PerformanceTests_TFRecordIOIT #87

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/87/display/redirect?page=changes>

Changes:

[mariagh] Support argparse-style choices for ValueProvider

[kenn] Move TestCountingSource to appropriate location

[kenn] Sickbay ApexRunner gradle WordCountIT

[lcwik] [BEAM-3249] Make sure that all java projects package tests. Also package

[lcwik] [BEAM-3249] Do not assume build directory is within build/, use the

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Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.4.0.dev0
    Not uninstalling apache-beam at <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python,> outside environment <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env>
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins6488906286224969176.sh
+ .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.tfrecordioit_pkb_results --temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/> --official=true --benchmarks=beam_integration_benchmark --beam_it_timeout=1200 --beam_it_profile=io-it --beam_prebuilt=true --beam_sdk=java --beam_it_module=sdks/java/io/file-based-io-tests --beam_it_class=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT '--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/87/]' '--beam_extra_mvn_properties=[filesystem=gcs]'
2018-02-01 06:00:43,445 a0c06e61 MainThread INFO     Verbose logging to: <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/pkb.log>
2018-02-01 06:00:43,445 a0c06e61 MainThread INFO     PerfKitBenchmarker version: v1.12.0-260-ge324e61
2018-02-01 06:00:43,446 a0c06e61 MainThread INFO     Flag values:
--beam_extra_mvn_properties=[filesystem=gcs]
--beam_it_class=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT
--beam_it_timeout=1200
--beam_sdk=java
--temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/>
--maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/87/]
--beam_prebuilt
--project=apache-beam-testing
--bigquery_table=beam_performance.tfrecordioit_pkb_results
--official
--beam_it_module=sdks/java/io/file-based-io-tests
--dpb_log_level=INFO
--beam_it_profile=io-it
--benchmarks=beam_integration_benchmark
2018-02-01 06:00:43,747 a0c06e61 MainThread WARNING  The key "flags" was not in the default config, but was in user overrides. This may indicate a typo.
2018-02-01 06:00:43,747 a0c06e61 MainThread INFO     Initializing the edw service decoder
2018-02-01 06:00:43,895 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Provisioning resources for benchmark beam_integration_benchmark
2018-02-01 06:00:43,898 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Preparing benchmark beam_integration_benchmark
2018-02-01 06:00:43,899 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Running: git clone https://github.com/apache/beam.git
2018-02-01 06:00:53,795 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Running benchmark beam_integration_benchmark
2018-02-01 06:00:53,804 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Running: /home/jenkins/tools/maven/latest/bin/mvn -e verify -Dit.test=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT -DskipITs=false -pl sdks/java/io/file-based-io-tests -Pio-it -Pdataflow-runner -Dfilesystem=gcs -DintegrationTestPipelineOptions=["--project=apache-beam-testing","--tempRoot=gs://temp-storage-for-perf-tests","--numberOfRecords=1000000","--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/87/","--runner=TestDataflowRunner"]
2018-02-01 06:20:53,808 a0c06e61 Thread-3 ERROR    IssueCommand timed out after 1200 seconds. Killing command "/home/jenkins/tools/maven/latest/bin/mvn -e verify -Dit.test=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT -DskipITs=false -pl sdks/java/io/file-based-io-tests -Pio-it -Pdataflow-runner -Dfilesystem=gcs -DintegrationTestPipelineOptions=["--project=apache-beam-testing","--tempRoot=gs://temp-storage-for-perf-tests","--numberOfRecords=1000000","--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/87/","--runner=TestDataflowRunner"]".
2018-02-01 06:20:53,844 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Ran /home/jenkins/tools/maven/latest/bin/mvn -e verify -Dit.test=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT -DskipITs=false -pl sdks/java/io/file-based-io-tests -Pio-it -Pdataflow-runner -Dfilesystem=gcs -DintegrationTestPipelineOptions=["--project=apache-beam-testing","--tempRoot=gs://temp-storage-for-perf-tests","--numberOfRecords=1000000","--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/87/","--runner=TestDataflowRunner"]. Got return code (-9).
STDOUT: [INFO] Error stacktraces are turned on.
[INFO] Scanning for projects...
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.apache.beam:beam-runners-java-fn-execution:jar:2.4.0-SNAPSHOT
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.google.protobuf:protobuf-java:jar -> duplicate declaration of version (?) @ org.apache.beam:beam-runners-java-fn-execution:[unknown-version], <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/runners/java-fn-execution/pom.xml,> line 66, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.beam:beam-runners-core-construction-java:jar -> duplicate declaration of version (?) @ org.apache.beam:beam-runners-java-fn-execution:[unknown-version], <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/runners/java-fn-execution/pom.xml,> line 115, column 17
[WARNING] 
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[INFO] os.detected.name: linux
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[INFO] os.detected.version.major: 4
[INFO] os.detected.version.minor: 4
[INFO] os.detected.release: ubuntu
[INFO] os.detected.release.version: 14.04
[INFO] os.detected.release.like.ubuntu: true
[INFO] os.detected.release.like.debian: true
[INFO] os.detected.classifier: linux-x86_64
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[INFO] Building Apache Beam :: SDKs :: Java :: IO :: File-based-io-tests 2.4.0-SNAPSHOT
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[INFO] --- maven-compiler-plugin:3.7.0:testCompile (default-testCompile) @ beam-sdks-java-io-file-based-io-tests ---
[INFO] Changes detected - recompiling the module!
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[INFO] <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/src/test/java/org/apache/beam/sdk/io/text/TextIOIT.java>: Some input files use or override a deprecated API.
[INFO] <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/src/test/java/org/apache/beam/sdk/io/text/TextIOIT.java>: Recompile with -Xlint:deprecation for details.
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[INFO] Building jar: <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/target/beam-sdks-java-io-file-based-io-tests-2.4.0-SNAPSHOT-tests.jar>
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[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/target/beam-sdks-java-io-file-based-io-tests-2.4.0-SNAPSHOT.jar> with <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/target/beam-sdks-java-io-file-based-io-tests-2.4.0-SNAPSHOT-shaded.jar>
[INFO] Replacing original test artifact with shaded test artifact.
[INFO] Replacing <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/target/beam-sdks-java-io-file-based-io-tests-2.4.0-SNAPSHOT-tests.jar> with <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/beam/sdks/java/io/file-based-io-tests/target/beam-sdks-java-io-file-based-io-tests-2.4.0-SNAPSHOT-shaded-tests.jar>
[INFO] 
[INFO] --- maven-failsafe-plugin:2.20.1:integration-test (default) @ beam-sdks-java-io-file-based-io-tests ---
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[INFO] parallel='all', perCoreThreadCount=true, threadCount=4, useUnlimitedThreads=false, threadCountSuites=0, threadCountClasses=0, threadCountMethods=0, parallelOptimized=true
[INFO] 
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------

STDERR: 
2018-02-01 06:20:53,845 a0c06e61 MainThread beam_integration_benchmark(1/1) ERROR    Error during benchmark beam_integration_benchmark
Traceback (most recent call last):
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 601, in RunBenchmark
    DoRunPhase(spec, collector, detailed_timer)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 504, in DoRunPhase
    samples = spec.BenchmarkRun(spec)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py",> line 159, in Run
    job_type=job_type)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py",> line 90, in SubmitJob
    assert retcode == 0, "Integration Test Failed."
AssertionError: Integration Test Failed.
2018-02-01 06:20:53,847 a0c06e61 MainThread beam_integration_benchmark(1/1) INFO     Cleaning up benchmark beam_integration_benchmark
2018-02-01 06:20:53,849 a0c06e61 MainThread beam_integration_benchmark(1/1) ERROR    Benchmark 1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue.
2018-02-01 06:20:53,861 a0c06e61 MainThread INFO     Benchmark run statuses:
---------------------------------------------------------------
Name                        UID                          Status
---------------------------------------------------------------
beam_integration_benchmark  beam_integration_benchmark0  FAILED
---------------------------------------------------------------
Success rate: 0.00% (0/1)
2018-02-01 06:20:53,862 a0c06e61 MainThread INFO     Complete logs can be found at: <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/pkb.log>
2018-02-01 06:20:53,862 a0c06e61 MainThread INFO     Completion statuses can be found at: <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/runs/a0c06e61/completion_statuses.json>
Build step 'Execute shell' marked build as failure

Build failed in Jenkins: beam_PerformanceTests_TFRecordIOIT #86

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/86/display/redirect?page=changes>

Changes:

[wcn] Update generated version of Fn API code.

[robertwb] [BEAM-3490] Make runtime type checking code runner agnostic.

[github] get the query from configuration not options

[dariusz.aniszewski] use build $WORKSPACE as pkb temp_dir and update pip and setuptools in

[kenn] google-java-format

[kenn] Fix Distinct null pointer error with speculative triggers

[robertwb] Direct runner fixes.

[lcwik] [BEAM-2926] Add support for side inputs to the runner harness.

[kenn] Sickbay flakey KinesisReaderTest

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    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/core/src/dummymodule.o -Lbuild/temp.linux-x86_64-2.7 -lm -o build/lib.linux-x86_64-2.7/numpy/core/_dummy.so
    building 'numpy.core.multiarray' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/compiled_base.c
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    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/getset.c
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    x86_64-linux-gnu-gcc: numpy/core/src/private/ufunc_override.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/methods.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/datetime_busdaycal.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/vdot.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/array_assign_array.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/buffer.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/refcount.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/convert.c
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    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/multiarraymodule.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/item_selection.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/usertypes.c
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/multiarray/arraytypes.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/calculation.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/hashdescr.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/scalarapi.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/dtype_transfer.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/mapping.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/flagsobject.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/nditer_constr.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/convert_datatype.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/array_assign_scalar.c
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    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/common.c
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/multiarray/nditer_templ.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/ucsnarrow.c
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/multiarray/einsum.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/number.c
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    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/datetime.c
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    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/nditer_api.c
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    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/multiarray/scalartypes.c
    x86_64-linux-gnu-gcc: numpy/core/src/private/mem_overlap.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/array_assign.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/nditer_pywrap.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/datetime_busday.c
    x86_64-linux-gnu-gcc: numpy/core/src/multiarray/alloc.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/alloc.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/arrayobject.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/arraytypes.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/array_assign.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/array_assign_scalar.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/array_assign_array.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/buffer.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/calculation.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/compiled_base.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/common.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/convert.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/convert_datatype.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/conversion_utils.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/ctors.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/datetime.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/datetime_strings.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/datetime_busday.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/datetime_busdaycal.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/descriptor.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/dtype_transfer.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/einsum.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/flagsobject.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/getset.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/hashdescr.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/item_selection.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/iterators.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/lowlevel_strided_loops.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/mapping.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/methods.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/multiarraymodule.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/nditer_templ.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/nditer_api.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/nditer_constr.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/nditer_pywrap.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/number.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/numpyos.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/refcount.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/sequence.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/shape.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/scalarapi.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/scalartypes.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/temp_elide.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/usertypes.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/ucsnarrow.o build/temp.linux-x86_64-2.7/numpy/core/src/multiarray/vdot.o build/temp.linux-x86_64-2.7/numpy/core/src/private/mem_overlap.o build/temp.linux-x86_64-2.7/numpy/core/src/private/ufunc_override.o -Lbuild/temp.linux-x86_64-2.7 -lnpymath -lnpysort -lm -o build/lib.linux-x86_64-2.7/numpy/core/multiarray.so
    building 'numpy.core.umath' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/umath -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/core/src/umath/ufunc_type_resolution.c
    x86_64-linux-gnu-gcc: numpy/core/src/umath/ufunc_object.c
    numpy/core/src/umath/ufunc_object.c: In function ‘PyUFunc_GenericReduction’:
    numpy/core/src/umath/ufunc_object.c:3912:15: warning: unused variable ‘out_obj’ [-Wunused-variable]
         PyObject *out_obj = NULL;
                   ^
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/scalarmath.c
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/loops.c
    x86_64-linux-gnu-gcc: numpy/core/src/umath/umathmodule.c
    x86_64-linux-gnu-gcc: numpy/core/src/umath/reduction.c
    x86_64-linux-gnu-gcc: numpy/core/src/private/mem_overlap.c
    x86_64-linux-gnu-gcc: numpy/core/src/private/ufunc_override.c
    x86_64-linux-gnu-gcc: numpy/core/src/umath/override.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/core/src/umath/umathmodule.o build/temp.linux-x86_64-2.7/numpy/core/src/umath/reduction.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/loops.o build/temp.linux-x86_64-2.7/numpy/core/src/umath/ufunc_object.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/scalarmath.o build/temp.linux-x86_64-2.7/numpy/core/src/umath/ufunc_type_resolution.o build/temp.linux-x86_64-2.7/numpy/core/src/umath/override.o build/temp.linux-x86_64-2.7/numpy/core/src/private/mem_overlap.o build/temp.linux-x86_64-2.7/numpy/core/src/private/ufunc_override.o -Lbuild/temp.linux-x86_64-2.7 -lnpymath -lm -o build/lib.linux-x86_64-2.7/numpy/core/umath.so
    building 'numpy.core.umath_tests' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/umath_tests.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/umath_tests.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/core/umath_tests.so
    building 'numpy.core.test_rational' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/test_rational.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/test_rational.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/core/test_rational.so
    building 'numpy.core.struct_ufunc_test' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/struct_ufunc_test.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/struct_ufunc_test.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/core/struct_ufunc_test.so
    building 'numpy.core.multiarray_tests' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/core/src/private/mem_overlap.c
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/multiarray/multiarray_tests.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/multiarray/multiarray_tests.o build/temp.linux-x86_64-2.7/numpy/core/src/private/mem_overlap.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/core/multiarray_tests.so
    building 'numpy.core.operand_flag_tests' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-DNPY_INTERNAL_BUILD=1 -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/core/src/umath/operand_flag_tests.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/core/src/umath/operand_flag_tests.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/core/operand_flag_tests.so
    building 'numpy.fft.fftpack_lite' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/fft/fftpack.c
    x86_64-linux-gnu-gcc: numpy/fft/fftpack_litemodule.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/fft/fftpack_litemodule.o build/temp.linux-x86_64-2.7/numpy/fft/fftpack.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/fft/fftpack_lite.so
    building 'numpy.linalg.lapack_lite' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/python_xerbla.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_blas.c
    numpy/linalg/lapack_lite/f2c_blas.c: In function ‘cgemm_’:
    numpy/linalg/lapack_lite/f2c_blas.c:389:20: warning: variable ‘ncola’ set but not used [-Wunused-but-set-variable]
         static integer ncola;
                        ^
    numpy/linalg/lapack_lite/f2c_blas.c: In function ‘dgemm_’:
    numpy/linalg/lapack_lite/f2c_blas.c:6895:20: warning: variable ‘ncola’ set but not used [-Wunused-but-set-variable]
         static integer ncola;
                        ^
    numpy/linalg/lapack_lite/f2c_blas.c: In function ‘sgemm_’:
    numpy/linalg/lapack_lite/f2c_blas.c:11514:20: warning: variable ‘ncola’ set but not used [-Wunused-but-set-variable]
         static integer ncola;
                        ^
    numpy/linalg/lapack_lite/f2c_blas.c: In function ‘zgemm_’:
    numpy/linalg/lapack_lite/f2c_blas.c:15736:20: warning: variable ‘ncola’ set but not used [-Wunused-but-set-variable]
         static integer ncola;
                        ^
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_litemodule.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_z_lapack.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_config.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_d_lapack.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_s_lapack.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_lapack.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c_c_lapack.c
    x86_64-linux-gnu-gcc: numpy/linalg/lapack_lite/f2c.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/linalg/lapack_litemodule.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/python_xerbla.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_z_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_c_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_d_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_s_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_blas.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_config.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/linalg/lapack_lite.so
    building 'numpy.linalg._umath_linalg' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: build/src.linux-x86_64-2.7/numpy/linalg/umath_linalg.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/numpy/linalg/umath_linalg.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/python_xerbla.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_z_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_c_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_d_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_s_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_lapack.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_blas.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c_config.o build/temp.linux-x86_64-2.7/numpy/linalg/lapack_lite/f2c.o -Lbuild/temp.linux-x86_64-2.7 -lnpymath -o build/lib.linux-x86_64-2.7/numpy/linalg/_umath_linalg.so
    building 'numpy.random.mtrand' extension
    compiling C sources
    C compiler: x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
    
    compile options: '-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -D_LARGEFILE64_SOURCE=1 -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -Ibuild/src.linux-x86_64-2.7/numpy/core/src/private -Ibuild/src.linux-x86_64-2.7/numpy/core/src/npymath -c'
    x86_64-linux-gnu-gcc: numpy/random/mtrand/distributions.c
    x86_64-linux-gnu-gcc: numpy/random/mtrand/mtrand.c
    x86_64-linux-gnu-gcc: numpy/random/mtrand/initarray.c
    x86_64-linux-gnu-gcc: numpy/random/mtrand/randomkit.c
    x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/numpy/random/mtrand/mtrand.o build/temp.linux-x86_64-2.7/numpy/random/mtrand/randomkit.o build/temp.linux-x86_64-2.7/numpy/random/mtrand/initarray.o build/temp.linux-x86_64-2.7/numpy/random/mtrand/distributions.o -Lbuild/temp.linux-x86_64-2.7 -o build/lib.linux-x86_64-2.7/numpy/random/mtrand.so
    Creating build/scripts.linux-x86_64-2.7/f2py
      adding 'build/scripts.linux-x86_64-2.7/f2py' to scripts
    changing mode of build/scripts.linux-x86_64-2.7/f2py from 644 to 755
    
    warning: no previously-included files matching '*.pyo' found anywhere in distribution
    warning: no previously-included files matching '*.pyd' found anywhere in distribution
    changing mode of <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/bin/f2py> to 755
Successfully installed numpy
Cleaning up...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins7111027174926239817.sh
+ .env/bin/pip install -e 'src/sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
  Running setup.py (path:<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py)> egg_info for package from file://<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
    <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended.
      _PIP_VERSION, REQUIRED_PIP_VERSION
    no previously-included directories found matching 'doc/.build'
    
    Installed <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/nose-1.3.7-py2.7.egg>
    /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
      warnings.warn(msg)
    
    warning: no files found matching 'README.md'
    warning: no files found matching 'NOTICE'
    warning: no files found matching 'LICENSE'
  Installing extra requirements: 'gcp,test'
Requirement already satisfied (use --upgrade to upgrade): avro>=1.8.1,<2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): crcmod>=1.7,<2.0 in /usr/lib/python2.7/dist-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): grpcio>=1.0,<2 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
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Requirement already satisfied (use --upgrade to upgrade): typing>=3.6.0,<3.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
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Requirement already satisfied (use --upgrade to upgrade): googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
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Requirement already satisfied (use --upgrade to upgrade): pyasn1-modules>=0.0.5 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client>=2.0.1,<5->apache-beam==2.4.0.dev)
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Requirement already satisfied (use --upgrade to upgrade): googleapis-common-protos>=1.5.2,<2.0dev in /home/jenkins/.local/lib/python2.7/site-packages (from proto-google-cloud-datastore-v1>=0.90.0,<=0.90.4->apache-beam==2.4.0.dev)
Installing collected packages: apache-beam
  Running setup.py develop for apache-beam
    <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended.
      _PIP_VERSION, REQUIRED_PIP_VERSION
    /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
      warnings.warn(msg)
    
    warning: no files found matching 'README.md'
    warning: no files found matching 'NOTICE'
    warning: no files found matching 'LICENSE'
    Creating <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/lib/python2.7/site-packages/apache-beam.egg-link> (link to .)
    Adding apache-beam 2.4.0.dev to easy-install.pth file
    
    Installed <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
Successfully installed apache-beam
Cleaning up...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins613676319950636294.sh
+ .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.tfrecordioit_pkb_results --official=true --benchmarks=beam_integration_benchmark --beam_it_timeout=1200 --beam_it_profile=io-it --beam_prebuilt=true --beam_sdk=java --beam_it_module=sdks/java/io/file-based-io-tests --beam_it_class=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT '--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/86/]' '--beam_extra_mvn_properties=[filesystem=gcs]'
Traceback (most recent call last):
  File "PerfKitBenchmarker/pkb.py", line 21, in <module>
    sys.exit(Main())
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 869, in Main
    SetUpPKB()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 740, in SetUpPKB
    vm_util.GenTempDir()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/vm_util.py",> line 121, in GenTempDir
    temp_dir.CreateTemporaryDirectories()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/temp_dir.py",> line 62, in CreateTemporaryDirectories
    os.makedirs(path)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/lib/python2.7/os.py",> line 157, in makedirs
    mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/tmp/perfkitbenchmarker/runs/34c1c4dc'
Build step 'Execute shell' marked build as failure


Build failed in Jenkins: beam_PerformanceTests_TFRecordIOIT #85

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/85/display/redirect?page=changes>

Changes:

[iemejia] [BEAM-3578] SQL module build breaks because of missing dependency

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam1 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git +refs/heads/*:refs/remotes/origin/* +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 7b7e8dde29f26f0a1a77b6a894af07e97599d24e (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 7b7e8dde29f26f0a1a77b6a894af07e97599d24e
Commit message: "Merge pull request #4549 from iemejia/BEAM-2578-sql-dep"
 > git rev-list 645e1b51e1c83ec4b0b54a774d6615624f3c42ed # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins2332473551161903463.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins9109232480786467105.sh
+ rm -rf .env
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins6883256581035659213.sh
+ virtualenv .env --system-site-packages
New python executable in <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/bin/python>
Installing setuptools, pip, wheel...done.
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins2293381082347443228.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins1963214002462319503.sh
+ .env/bin/pip install -r PerfKitBenchmarker/requirements.txt
Requirement already satisfied: absl-py in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 14))
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Requirement already satisfied: ipaddress; python_version < "3" in /usr/local/lib/python2.7/dist-packages (from cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
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[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins227991903741774662.sh
+ .env/bin/pip install -e 'src/sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
Requirement already satisfied: avro<2.0.0,>=1.8.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev0)
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Requirement already satisfied: monotonic>=0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from fasteners>=0.14->google-apitools<=0.5.20,>=0.5.18->apache-beam==2.4.0.dev0)
Requirement already satisfied: google-auth<2.0.0dev,>=0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: google-auth-httplib2 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: google-gax<0.16dev,>=0.15.7 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: proto-google-cloud-pubsub-v1[grpc]<0.16dev,>=0.15.4 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: grpc-google-iam-v1<0.12dev,>=0.11.1 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: cachetools>=2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-auth<2.0.0dev,>=0.4.0->google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: future<0.17dev,>=0.16.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: ply==3.8 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: requests<3.0dev,>=2.13.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: idna<2.6,>=2.5 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: urllib3<1.22,>=1.21.1 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Requirement already satisfied: certifi>=2017.4.17 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.4.0.dev0)
Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.4.0.dev0
    Not uninstalling apache-beam at /home/jenkins/jenkins-slave/workspace/beam_PerformanceTests_TextIOIT/src/sdks/python, outside environment <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env>
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins5709183601690769187.sh
+ .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.tfrecordioit_pkb_results --official=true --benchmarks=beam_integration_benchmark --beam_it_timeout=1200 --beam_it_profile=io-it --beam_prebuilt=true --beam_sdk=java --beam_it_module=sdks/java/io/file-based-io-tests --beam_it_class=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT '--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/85/]' '--beam_extra_mvn_properties=[filesystem=gcs]'
Traceback (most recent call last):
  File "PerfKitBenchmarker/pkb.py", line 21, in <module>
    sys.exit(Main())
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 869, in Main
    SetUpPKB()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 740, in SetUpPKB
    vm_util.GenTempDir()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/vm_util.py",> line 121, in GenTempDir
    temp_dir.CreateTemporaryDirectories()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/temp_dir.py",> line 62, in CreateTemporaryDirectories
    os.makedirs(path)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/lib/python2.7/os.py",> line 157, in makedirs
    mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/tmp/perfkitbenchmarker/runs/238c8ef8'
Build step 'Execute shell' marked build as failure

Build failed in Jenkins: beam_PerformanceTests_TFRecordIOIT #84

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/84/display/redirect>

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam4 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git +refs/heads/*:refs/remotes/origin/* +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 645e1b51e1c83ec4b0b54a774d6615624f3c42ed (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 645e1b51e1c83ec4b0b54a774d6615624f3c42ed
Commit message: "Merge pull request #4448: [SQL] Refactor Variance"
 > git rev-list 645e1b51e1c83ec4b0b54a774d6615624f3c42ed # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins3476075544797608690.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins6773356292101777668.sh
+ rm -rf .env
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins4252389009009491535.sh
+ virtualenv .env --system-site-packages
New python executable in .env/bin/python
Installing setuptools, pip...done.
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins5659438649329314867.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins7790364436482254505.sh
+ .env/bin/pip install -r PerfKitBenchmarker/requirements.txt
Requirement already satisfied (use --upgrade to upgrade): absl-py in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 14))
Requirement already satisfied (use --upgrade to upgrade): jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 15))
Requirement already satisfied (use --upgrade to upgrade): setuptools in ./.env/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 16))
Requirement already satisfied (use --upgrade to upgrade): colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 17))
  Installing extra requirements: 'windows'
Requirement already satisfied (use --upgrade to upgrade): blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 18))
Requirement already satisfied (use --upgrade to upgrade): futures>=3.0.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 19))
Requirement already satisfied (use --upgrade to upgrade): PyYAML==3.12 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 20))
Requirement already satisfied (use --upgrade to upgrade): pint>=0.7 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 21))
Requirement already satisfied (use --upgrade to upgrade): numpy in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 22))
Requirement already satisfied (use --upgrade to upgrade): functools32 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 23))
Requirement already satisfied (use --upgrade to upgrade): contextlib2>=0.5.1 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 24))
Requirement already satisfied (use --upgrade to upgrade): pywinrm in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 25))
Cleaning up...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins2673190282681131954.sh
+ .env/bin/pip install -e 'src/sdks/python/[gcp,test]'
Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
  Running setup.py (path:<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py)> egg_info for package from file://<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
    <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended.
      _PIP_VERSION, REQUIRED_PIP_VERSION
    no previously-included directories found matching 'doc/.build'
    
    Installed <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/nose-1.3.7-py2.7.egg>
    /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
      warnings.warn(msg)
    
    warning: no files found matching 'README.md'
    warning: no files found matching 'NOTICE'
    warning: no files found matching 'LICENSE'
  Installing extra requirements: 'gcp,test'
Requirement already satisfied (use --upgrade to upgrade): avro>=1.8.1,<2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): crcmod>=1.7,<2.0 in /usr/lib/python2.7/dist-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): grpcio>=1.0,<2 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): httplib2>=0.8,<0.10 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): mock>=1.0.1,<3.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): oauth2client>=2.0.1,<5 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): protobuf>=3.5.0.post1,<4 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): pyyaml>=3.12,<4.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): pyvcf>=0.6.8,<0.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): six>=1.9,<1.12 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): typing>=3.6.0,<3.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): futures>=3.1.1,<4.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): hdfs3>=0.3.0,<0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): pyhamcrest>=1.9,<2.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): google-apitools>=0.5.18,<=0.5.20 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): proto-google-cloud-datastore-v1>=0.90.0,<=0.90.4 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): google-cloud-bigquery==0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): enum34>=1.0.4 in /home/jenkins/.local/lib/python2.7/site-packages (from grpcio>=1.0,<2->apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): pyasn1>=0.1.7 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client>=2.0.1,<5->apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): pyasn1-modules>=0.0.5 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client>=2.0.1,<5->apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): rsa>=3.1.4 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client>=2.0.1,<5->apache-beam==2.4.0.dev)
Requirement already satisfied (use --upgrade to upgrade): googleapis-common-protos>=1.5.2,<2.0dev in /home/jenkins/.local/lib/python2.7/site-packages (from proto-google-cloud-datastore-v1>=0.90.0,<=0.90.4->apache-beam==2.4.0.dev)
Installing collected packages: apache-beam
  Running setup.py develop for apache-beam
    <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended.
      _PIP_VERSION, REQUIRED_PIP_VERSION
    /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires'
      warnings.warn(msg)
    
    warning: no files found matching 'README.md'
    warning: no files found matching 'NOTICE'
    warning: no files found matching 'LICENSE'
    Creating <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/lib/python2.7/site-packages/apache-beam.egg-link> (link to .)
    Adding apache-beam 2.4.0.dev to easy-install.pth file
    
    Installed <https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/src/sdks/python>
Successfully installed apache-beam
Cleaning up...
[beam_PerformanceTests_TFRecordIOIT] $ /bin/bash -xe /tmp/jenkins6406035268678406039.sh
+ .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.tfrecordioit_pkb_results --official=true --benchmarks=beam_integration_benchmark --beam_it_timeout=1200 --beam_it_profile=io-it --beam_prebuilt=true --beam_sdk=java --beam_it_module=sdks/java/io/file-based-io-tests --beam_it_class=org.apache.beam.sdk.io.tfrecord.TFRecordIOIT '--beam_it_options=[--project=apache-beam-testing,--tempRoot=gs://temp-storage-for-perf-tests,--numberOfRecords=1000000,--filenamePrefix=gs://temp-storage-for-perf-tests/beam_PerformanceTests_TFRecordIOIT/84/]' '--beam_extra_mvn_properties=[filesystem=gcs]'
Traceback (most recent call last):
  File "PerfKitBenchmarker/pkb.py", line 21, in <module>
    sys.exit(Main())
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 869, in Main
    SetUpPKB()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 740, in SetUpPKB
    vm_util.GenTempDir()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/vm_util.py",> line 121, in GenTempDir
    temp_dir.CreateTemporaryDirectories()
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/PerfKitBenchmarker/perfkitbenchmarker/temp_dir.py",> line 62, in CreateTemporaryDirectories
    os.makedirs(path)
  File "<https://builds.apache.org/job/beam_PerformanceTests_TFRecordIOIT/ws/.env/lib/python2.7/os.py",> line 157, in makedirs
    mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/tmp/perfkitbenchmarker/runs/97020f52'
Build step 'Execute shell' marked build as failure