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Posted to commits@airavata.apache.org by sc...@apache.org on 2015/08/24 21:29:00 UTC
[22/32] airavata-sandbox git commit: adding datacat system
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java
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diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java
new file mode 100644
index 0000000..9450ea9
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Parser.java
@@ -0,0 +1,539 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.g1;
+
+import java_cup.runtime.lr_parser;
+import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser;
+
+import javax.swing.*;
+import java.io.FileReader;
+import java.util.ArrayList;
+import java.util.HashMap;
+
+
+public class G1Parser extends java_cup.runtime.lr_parser implements GridChemQueueParser {
+
+ /** Default constructor. */
+ public G1Parser() {super();}
+
+ /** Constructor which sets the default scanner. */
+ public G1Parser(java_cup.runtime.Scanner s) {super(s);}
+
+ /**
+ * Constructor which uses a file reader.
+ */
+ public G1Parser(final FileReader fileReader) {
+ super(new G1Lexer(fileReader));
+ }
+
+ /** Production table. */
+ protected static final short _production_table[][] =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\025\000\002\003\007\000\002\002\004\000\002\004" +
+ "\003\000\002\005\004\000\002\005\003\000\002\021\002" +
+ "\000\002\006\006\000\002\022\002\000\002\007\007\000" +
+ "\002\010\004\000\002\011\004\000\002\012\004\000\002" +
+ "\013\003\000\002\014\004\000\002\014\003\000\002\023" +
+ "\002\000\002\016\006\000\002\024\002\000\002\015\007" +
+ "\000\002\017\004\000\002\020\004"});
+
+ /** Access to production table. */
+ public short[][] production_table() {return _production_table;}
+
+ /** Parse-action table. */
+ protected static final short[][] _action_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\052\000\004\004\005\001\002\000\004\007\012\001" +
+ "\002\000\004\007\uffff\001\002\000\004\002\007\001\002" +
+ "\000\004\002\000\001\002\000\006\005\027\007\012\001" +
+ "\002\000\006\005\ufffd\007\ufffd\001\002\000\004\022\013" +
+ "\001\002\000\004\006\ufffc\001\002\000\004\006\016\001" +
+ "\002\000\006\005\ufffb\007\ufffb\001\002\000\004\020\017" +
+ "\001\002\000\004\010\ufffa\001\002\000\004\010\022\001" +
+ "\002\000\004\011\024\001\002\000\004\023\023\001\002" +
+ "\000\004\011\ufff8\001\002\000\004\024\026\001\002\000" +
+ "\006\005\ufff9\007\ufff9\001\002\000\006\005\ufff7\007\ufff7" +
+ "\001\002\000\004\012\031\001\002\000\006\005\ufffe\007" +
+ "\ufffe\001\002\000\004\014\ufff5\001\002\000\004\017\054" +
+ "\001\002\000\004\014\035\001\002\000\006\014\035\017" +
+ "\ufff6\001\002\000\004\025\037\001\002\000\006\014\ufff3" +
+ "\017\ufff3\001\002\000\004\013\ufff2\001\002\000\004\013" +
+ "\041\001\002\000\004\021\043\001\002\000\006\014\ufff1" +
+ "\017\ufff1\001\002\000\004\015\ufff0\001\002\000\004\015" +
+ "\046\001\002\000\004\016\051\001\002\000\004\026\047" +
+ "\001\002\000\004\016\uffee\001\002\000\006\014\uffef\017" +
+ "\uffef\001\002\000\004\027\052\001\002\000\006\014\uffed" +
+ "\017\uffed\001\002\000\006\014\ufff4\017\ufff4\001\002\000" +
+ "\004\002\001\001\002"});
+
+ /** Access to parse-action table. */
+ public short[][] action_table() {return _action_table;}
+
+ /** <code>reduce_goto</code> table. */
+ protected static final short[][] _reduce_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\052\000\006\003\005\004\003\001\001\000\006\005" +
+ "\007\006\010\001\001\000\002\001\001\000\002\001\001" +
+ "\000\002\001\001\000\004\006\027\001\001\000\002\001" +
+ "\001\000\002\001\001\000\004\021\013\001\001\000\004" +
+ "\007\014\001\001\000\002\001\001\000\002\001\001\000" +
+ "\004\022\017\001\001\000\004\010\020\001\001\000\004" +
+ "\011\024\001\001\000\002\001\001\000\002\001\001\000" +
+ "\002\001\001\000\002\001\001\000\002\001\001\000\006" +
+ "\012\031\013\032\001\001\000\002\001\001\000\002\001" +
+ "\001\000\002\001\001\000\006\014\033\016\035\001\001" +
+ "\000\004\016\052\001\001\000\002\001\001\000\002\001" +
+ "\001\000\004\023\037\001\001\000\004\015\041\001\001" +
+ "\000\002\001\001\000\002\001\001\000\004\024\043\001" +
+ "\001\000\004\017\044\001\001\000\004\020\047\001\001" +
+ "\000\002\001\001\000\002\001\001\000\002\001\001\000" +
+ "\002\001\001\000\002\001\001\000\002\001\001\000\002" +
+ "\001\001"});
+
+ /** Access to <code>reduce_goto</code> table. */
+ public short[][] reduce_table() {return _reduce_table;}
+
+ /** Instance of action encapsulation class. */
+ protected CUP$parser$actions action_obj;
+
+ //Each string is of the format
+ //rmsForce, maximum force, iteration and energy
+ private ArrayList<String> result = new ArrayList<String>();
+ private String tempStr = "";
+
+
+ public ArrayList<String> getResult() {
+ return result;
+ }
+
+
+ public void addToResult(String value) {
+ result.add(value);
+ }
+
+ public String getTempStr() {
+ return tempStr;
+ }
+
+ public void setTempStr(String s) {
+ this.tempStr = s;
+ }
+
+ /*Adding the parsed data to the hash map */
+ @Override
+ public HashMap<String, String> getParsedData() throws Exception {
+ parse();
+ HashMap<String,String> results= new HashMap<String,String>();
+ int mpRMSForceCount=0;
+ int mpMaximumForceCount=0;
+ int mpIterationCount=0;
+ int energyCount=0;
+ int rmsForceCount=0;
+ int maximumForceCount=0;
+ int iterationCount=0;
+ for(int i=0;i<result.size();i++){
+ String singleString= result.get(i);
+ String[] temp = singleString.split(" ");
+ String secondElement=temp[1];
+ String thirdElement=temp[2];
+ if(thirdElement.equals("RMS")){
+ results.put("G1_Mp_RMS_Force_"+mpRMSForceCount,temp[4]);
+ mpRMSForceCount++;
+ }else if (thirdElement.equals("Maximum")){
+ results.put("G1_MP_Maximum_Force_"+mpMaximumForceCount,temp[4]);
+ mpMaximumForceCount++;
+ }else if (temp[3].equals("ITERATION")&&temp[2].equals("MP")){
+ results.put("G1_MP_Iteration_"+mpIterationCount,temp[3]);
+ mpIterationCount++;
+ }else if(thirdElement.equals("ENERGY")){
+ results.put("G1_Energy_"+energyCount,temp[3]);
+ energyCount++;
+ }else if(secondElement.equals("RMS")){
+ results.put("G1_RMS_Force"+rmsForceCount,temp[3]);
+ rmsForceCount++;
+ }else if(secondElement.equals("Maximum")){
+ results.put("G1_Maximum_Force"+maximumForceCount,temp[3]);
+ maximumForceCount++;
+ }else if(thirdElement.equals("ITERATION")){
+ results.put("G1_Iteration_"+iterationCount,temp[3]);
+ iterationCount++;
+ }
+ }
+
+ return results;
+ }
+
+ /** Action encapsulation object initializer. */
+ protected void init_actions()
+ {
+ action_obj = new CUP$parser$actions(this);
+ }
+
+ /** Invoke a user supplied parse action. */
+ public java_cup.runtime.Symbol do_action(
+ int act_num,
+ java_cup.runtime.lr_parser parser,
+ java.util.Stack stack,
+ int top)
+ throws java.lang.Exception
+ {
+ /* call code in generated class */
+ return action_obj.CUP$parser$do_action(act_num, parser, stack, top);
+ }
+
+ /** Indicates start state. */
+ public int start_state() {return 0;}
+ /** Indicates start production. */
+ public int start_production() {return 1;}
+
+ /** <code>EOF</code> Symbol index. */
+ public int EOF_sym() {return 0;}
+
+ /** <code>error</code> Symbol index. */
+ public int error_sym() {return 1;}
+
+
+}
+
+/** Cup generated class to encapsulate user supplied action code.*/
+class CUP$parser$actions {
+
+
+ //__________________________________
+ public static boolean DEBUG = true;
+ private static JTable table;
+ private static final String tableLabel = "SCF Intermediate Results:";
+// private static String cycle = "0";
+
+
+ public static JTable getTable() {
+ return table;
+ }
+
+ public static String getTableLabel() {
+ return tableLabel;
+ }
+
+// }
+
+ private final G1Parser G1Parser;
+
+ /** Constructor */
+ CUP$parser$actions(G1Parser G1Parser) {
+ this.G1Parser = G1Parser;
+ }
+
+ /** Method with the actual generated action code. */
+ public final java_cup.runtime.Symbol CUP$parser$do_action(
+ int CUP$parser$act_num,
+ java_cup.runtime.lr_parser CUP$parser$parser,
+ java.util.Stack CUP$parser$stack,
+ int CUP$parser$top)
+ throws java.lang.Exception
+ {
+ /* Symbol object for return from actions */
+ java_cup.runtime.Symbol CUP$parser$result;
+
+ /* select the action based on the action number */
+ switch (CUP$parser$act_num)
+ {
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 20: // force2 ::= MPRms MPRGRAD
+ {
+ Object RESULT = null;
+ int mprgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int mprgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float mprg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:g1: MP RMS Force "+mprg);
+ G1Parser.addToResult("CUP:g1: MP RMS Force "+mprg);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(14/*force2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 19: // force1 ::= MPMax MPMGRAD
+ {
+ Object RESULT = null;
+ int mpmgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int mpmgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float mpmg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:g1: MP Maximum Force "+mpmg);
+ G1Parser.addToResult("CUP:g1: MP Maximum Force "+mpmg);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(13/*force1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 18: // mpcycle ::= NMP MPITER NT$3 force1 force2
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$3
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value;
+ int itleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left;
+ int itright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).right;
+ Integer it = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-3)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(11/*mpcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 17: // NT$3 ::=
+ {
+ Object RESULT = null;
+ int itleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int itright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Integer it = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:g1: MP ITERATION "+it);
+ G1Parser.addToResult("CUP:g1: MP ITERATION "+it);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(18/*NT$3*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 16: // mpcycle1 ::= MPEnerg MPENERGY NT$2 mpcycle
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$2
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ int mpenleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left;
+ int mpenright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).right;
+ Float mpen = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(12/*mpcycle1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 15: // NT$2 ::=
+ {
+ Object RESULT = null;
+ int mpenleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int mpenright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float mpen = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:g1: ENERGY "+mpen);
+ G1Parser.addToResult("CUP:g1: ENERGY "+mpen);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(17/*NT$2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 14: // mppat ::= mpcycle1
+ {
+ Object RESULT = null;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(10/*mppat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 13: // mppat ::= mppat mpcycle1
+ {
+ Object RESULT = null;
+
+ if (DEBUG) System.out.println("CUP:g1: in mppat");
+
+ CUP$parser$result = new java_cup.runtime.Symbol(10/*mppat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 12: // mpintro ::= MPStart
+ {
+ Object RESULT = null;
+
+ if (DEBUG) System.out.println("CUP:g1: MPSTart ");
+
+ CUP$parser$result = new java_cup.runtime.Symbol(9/*mpintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 11: // mp2 ::= mpintro mppat
+ {
+ Object RESULT = null;
+
+ if (DEBUG) System.out.println("CUP:g1: in mp2 mpintro mppat");
+
+ CUP$parser$result = new java_cup.runtime.Symbol(8/*mp2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 10: // grad2 ::= RmsGrad1 RGRAD1
+ {
+ Object RESULT = null;
+ int rgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int rgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float rg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gopt: RMS Force "+rg);
+ G1Parser.addToResult("CUP:gopt: RMS Force "+rg);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(7/*grad2*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 9: // grad1 ::= MaxGrad1 MGRAD1
+ {
+ Object RESULT = null;
+ int mgleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int mgright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float mg = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gopt: Maximum Force "+mg);
+ G1Parser.addToResult("CUP:gopt: Maximum Force "+mg);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(6/*grad1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 8: // cycle ::= NSearch1 ITERATION1 NT$1 grad1 grad2
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$1
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-3)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(5/*cycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 7: // NT$1 ::=
+ {
+ Object RESULT = null;
+ int cleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int cright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Integer c = (Integer)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gopt: ITERATION "+c);
+ G1Parser.addToResult("CUP:gopt: ITERATION "+c);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(16/*NT$1*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 6: // scfcycle ::= Energ1 ENERGY1 NT$0 cycle
+ {
+ Object RESULT = null;
+ // propagate RESULT from NT$0
+ if ( ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value != null )
+ RESULT = (Object) ((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left;
+ int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).right;
+ Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-2)).value;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(4/*scfcycle*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-3)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 5: // NT$0 ::=
+ {
+ Object RESULT = null;
+ int eleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left;
+ int eright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right;
+ Float e = (Float)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-0)).value;
+ //___________________________________________________________________
+ if (DEBUG) System.out.println("CUP:gopt: ENERGY "+e);
+ G1Parser.addToResult("CUP:gopt: ENERGY "+e);
+
+ CUP$parser$result = new java_cup.runtime.Symbol(15/*NT$0*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 4: // scfpat ::= scfcycle
+ {
+ Object RESULT = null;
+
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 3: // scfpat ::= scfpat scfcycle
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gopt: in scfpat");
+ CUP$parser$result = new java_cup.runtime.Symbol(3/*scfpat*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 2: // scfintro ::= FOUNDITER1
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gopt: found the start of Iteration");
+ CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 1: // $START ::= startpt EOF
+ {
+ Object RESULT = null;
+ int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left;
+ int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right;
+ Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ RESULT = start_val;
+ CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ /* ACCEPT */
+ CUP$parser$parser.done_parsing();
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 0: // startpt ::= scfintro scfpat SCFDONE1 mp2 MPDONE
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gopt: end of parse tree ");
+
+ CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-4)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /* . . . . . .*/
+ default:
+ throw new Exception(
+ "Invalid action number found in internal parse table");
+
+ }
+ }
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java
new file mode 100644
index 0000000..f0e5e06
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/g1/G1Sym.java
@@ -0,0 +1,54 @@
+
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.g1;
+//----------------------------------------------------
+// The following code was generated by CUP v0.10k
+// Wed Sep 10 08:33:37 IST 2014
+//----------------------------------------------------
+
+/** CUP generated class containing symbol constants. */
+public class G1Sym {
+ /* terminals */
+ public static final int ENERGY1 = 16;
+ public static final int MPMGRAD = 20;
+ public static final int MGRAD1 = 17;
+ public static final int MaxGrad1 = 6;
+ public static final int NSearch1 = 4;
+ public static final int MPRGRAD = 21;
+ public static final int MPRms = 12;
+ public static final int RmsGrad1 = 7;
+ public static final int MPMax = 11;
+ public static final int MPDONE = 13;
+ public static final int EOF = 0;
+ public static final int MPENERGY = 19;
+ public static final int ITERATION1 = 14;
+ public static final int NMP = 9;
+ public static final int MPEnerg = 10;
+ public static final int error = 1;
+ public static final int MPITER = 15;
+ public static final int MPStart = 8;
+ public static final int FOUNDITER1 = 2;
+ public static final int Energ1 = 5;
+ public static final int SCFDONE1 = 3;
+ public static final int RGRAD1 = 18;
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java
new file mode 100644
index 0000000..9801a99
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianLexer.java
@@ -0,0 +1,864 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gaussian;/* The following code was generated by JFlex 1.4.3 on 9/10/14 9:00 AM */
+
+import java_cup.runtime.Symbol;
+import org.apache.airavata.datacat.parsers.gridchem.Settings;
+
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.PrintStream;
+
+
+/**
+ * This class is a scanner generated by
+ * <a href="http://www.jflex.de/">JFlex</a> 1.4.3
+ * on 9/10/14 9:00 AM from the specification file
+ * <tt>gaussian.flex</tt>
+ */
+public class GaussianLexer implements java_cup.runtime.Scanner {
+
+ /** This character denotes the end of file */
+ public static final int YYEOF = -1;
+
+ /** initial size of the lookahead buffer */
+ private static final int ZZ_BUFFERSIZE = 16384;
+
+ /** lexical states */
+ public static final int IGNOREALL = 6;
+ public static final int ITER1 = 4;
+ public static final int YYINITIAL = 0;
+ public static final int ITER = 2;
+
+ /**
+ * ZZ_LEXSTATE[l] is the state in the DFA for the lexical state l
+ * ZZ_LEXSTATE[l+1] is the state in the DFA for the lexical state l
+ * at the beginning of a line
+ * l is of the form l = 2*k, k a non negative integer
+ */
+ private static final int ZZ_LEXSTATE[] = {
+ 0, 0, 1, 1, 2, 2, 3, 3
+ };
+
+ /**
+ * Translates characters to character classes
+ */
+ private static final char [] ZZ_CMAP = {
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 6, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0,
+ 0, 19, 9, 0, 10, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0,
+ 0, 0, 0, 0, 0, 0, 13, 18, 12, 0, 0, 0, 0, 7, 0, 0,
+ 8, 0, 11, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 21, 0, 23, 15, 22, 14, 0, 0, 0, 0, 24, 0, 3,
+ 4, 0, 16, 20, 5, 17, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+ };
+
+ /**
+ * Translates DFA states to action switch labels.
+ */
+ private static final int [] ZZ_ACTION = zzUnpackAction();
+
+ private static final String ZZ_ACTION_PACKED_0 =
+ "\4\0\22\1\4\0\1\2\2\0\1\3\4\0\1\4"+
+ "\6\0\1\5\1\6\1\7\1\10\1\11\1\0\1\12"+
+ "\1\13\1\14\1\15\3\0\1\16\1\0\1\17\1\20"+
+ "\42\0\1\21\1\22";
+
+ private static int [] zzUnpackAction() {
+ int [] result = new int[94];
+ int offset = 0;
+ offset = zzUnpackAction(ZZ_ACTION_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAction(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /**
+ * Translates a state to a row index in the transition table
+ */
+ private static final int [] ZZ_ROWMAP = zzUnpackRowMap();
+
+ private static final String ZZ_ROWMAP_PACKED_0 =
+ "\0\0\0\31\0\62\0\113\0\144\0\175\0\226\0\257"+
+ "\0\310\0\341\0\372\0\u0113\0\u012c\0\u0145\0\u015e\0\u0177"+
+ "\0\u0190\0\u01a9\0\u01c2\0\u01db\0\u01f4\0\u020d\0\u0226\0\u023f"+
+ "\0\u0258\0\u0271\0\144\0\u028a\0\u02a3\0\144\0\u02bc\0\u02d5"+
+ "\0\u02ee\0\u0307\0\144\0\u01a9\0\u0320\0\u0339\0\u0352\0\u036b"+
+ "\0\u0384\0\144\0\144\0\144\0\144\0\144\0\u039d\0\144"+
+ "\0\144\0\144\0\144\0\u03b6\0\u03cf\0\u03e8\0\144\0\u0401"+
+ "\0\144\0\144\0\u041a\0\u0433\0\u044c\0\u0465\0\u047e\0\u0497"+
+ "\0\u04b0\0\u04c9\0\u04e2\0\u04fb\0\u0514\0\u052d\0\u0546\0\u055f"+
+ "\0\u0578\0\u0591\0\u05aa\0\u05c3\0\u05dc\0\u05f5\0\u060e\0\u0627"+
+ "\0\u0640\0\u0659\0\u0672\0\u068b\0\u06a4\0\u06bd\0\u06d6\0\u06ef"+
+ "\0\u0708\0\u0721\0\u073a\0\u0753\0\144\0\144";
+
+ private static int [] zzUnpackRowMap() {
+ int [] result = new int[94];
+ int offset = 0;
+ offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackRowMap(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int high = packed.charAt(i++) << 16;
+ result[j++] = high | packed.charAt(i++);
+ }
+ return j;
+ }
+
+ /**
+ * The transition table of the DFA
+ */
+ private static final int [] ZZ_TRANS = zzUnpackTrans();
+
+ private static final String ZZ_TRANS_PACKED_0 =
+ "\2\5\1\6\31\5\1\7\3\5\1\10\3\5\1\11"+
+ "\2\5\1\12\1\5\1\13\1\14\1\15\10\5\1\16"+
+ "\1\17\3\5\1\20\3\5\1\21\2\5\1\22\1\5"+
+ "\1\23\1\24\2\5\1\25\1\5\1\26\33\5\33\0"+
+ "\1\27\32\0\1\30\34\0\1\31\34\0\1\32\33\0"+
+ "\1\33\27\0\1\34\30\0\1\35\35\0\1\36\7\0"+
+ "\1\37\32\0\1\40\34\0\1\41\34\0\1\42\33\0"+
+ "\1\43\27\0\1\44\30\0\1\45\37\0\1\46\32\0"+
+ "\1\47\3\0\1\50\33\0\1\51\34\0\1\52\1\53"+
+ "\33\0\1\54\32\0\1\55\30\0\1\56\13\0\1\57"+
+ "\33\0\1\60\34\0\1\61\34\0\1\62\32\0\1\63"+
+ "\30\0\1\64\14\0\1\65\27\0\1\66\34\0\1\67"+
+ "\24\0\1\70\27\0\1\71\57\0\1\72\2\0\1\73"+
+ "\30\0\1\74\30\0\1\75\30\0\1\76\30\0\1\77"+
+ "\30\0\1\100\30\0\1\101\30\0\1\102\30\0\1\103"+
+ "\30\0\1\104\30\0\1\105\30\0\1\106\30\0\1\107"+
+ "\30\0\1\110\30\0\1\111\30\0\1\112\30\0\1\113"+
+ "\30\0\1\114\30\0\1\115\30\0\1\116\30\0\1\117"+
+ "\30\0\1\120\30\0\1\121\30\0\1\122\30\0\1\123"+
+ "\30\0\1\124\30\0\1\125\30\0\1\126\30\0\1\127"+
+ "\30\0\1\130\30\0\1\131\30\0\1\132\30\0\1\133"+
+ "\30\0\1\134\30\0\1\135\30\0\1\136\26\0";
+
+ private static int [] zzUnpackTrans() {
+ int [] result = new int[1900];
+ int offset = 0;
+ offset = zzUnpackTrans(ZZ_TRANS_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackTrans(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ value--;
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+
+ /* error codes */
+ private static final int ZZ_UNKNOWN_ERROR = 0;
+ private static final int ZZ_NO_MATCH = 1;
+ private static final int ZZ_PUSHBACK_2BIG = 2;
+
+ /* error messages for the codes above */
+ private static final String ZZ_ERROR_MSG[] = {
+ "Unkown internal scanner error",
+ "Error: could not match input",
+ "Error: pushback value was too large"
+ };
+
+ /**
+ * ZZ_ATTRIBUTE[aState] contains the attributes of state <code>aState</code>
+ */
+ private static final int [] ZZ_ATTRIBUTE = zzUnpackAttribute();
+
+ private static final String ZZ_ATTRIBUTE_PACKED_0 =
+ "\4\0\1\11\21\1\4\0\1\11\2\0\1\11\4\0"+
+ "\1\11\6\0\5\11\1\0\4\11\3\0\1\11\1\0"+
+ "\2\11\42\0\2\11";
+
+ private static int [] zzUnpackAttribute() {
+ int [] result = new int[94];
+ int offset = 0;
+ offset = zzUnpackAttribute(ZZ_ATTRIBUTE_PACKED_0, offset, result);
+ return result;
+ }
+
+ private static int zzUnpackAttribute(String packed, int offset, int [] result) {
+ int i = 0; /* index in packed string */
+ int j = offset; /* index in unpacked array */
+ int l = packed.length();
+ while (i < l) {
+ int count = packed.charAt(i++);
+ int value = packed.charAt(i++);
+ do result[j++] = value; while (--count > 0);
+ }
+ return j;
+ }
+
+ /** the input device */
+ private java.io.Reader zzReader;
+
+ /** the current state of the DFA */
+ private int zzState;
+
+ /** the current lexical state */
+ private int zzLexicalState = YYINITIAL;
+
+ /** this buffer contains the current text to be matched and is
+ the source of the yytext() string */
+ private char zzBuffer[] = new char[ZZ_BUFFERSIZE];
+
+ /** the textposition at the last accepting state */
+ private int zzMarkedPos;
+
+ /** the current text position in the buffer */
+ private int zzCurrentPos;
+
+ /** startRead marks the beginning of the yytext() string in the buffer */
+ private int zzStartRead;
+
+ /** endRead marks the last character in the buffer, that has been read
+ from input */
+ private int zzEndRead;
+
+ /** number of newlines encountered up to the start of the matched text */
+ private int yyline;
+
+ /** the number of characters up to the start of the matched text */
+ private int yychar;
+
+ /**
+ * the number of characters from the last newline up to the start of the
+ * matched text
+ */
+ private int yycolumn;
+
+ /**
+ * zzAtBOL == true <=> the scanner is currently at the beginning of a line
+ */
+ private boolean zzAtBOL = true;
+
+ /** zzAtEOF == true <=> the scanner is at the EOF */
+ private boolean zzAtEOF;
+
+ /** denotes if the user-EOF-code has already been executed */
+ private boolean zzEOFDone;
+
+ /* user code: */
+ public static boolean DEBUG = false;
+
+
+ /**
+ * Creates a new scanner
+ * There is also a java.io.InputStream version of this constructor.
+ *
+ * @param in the java.io.Reader to read input from.
+ */
+ public GaussianLexer(java.io.Reader in) {
+ this.zzReader = in;
+ }
+
+ /**
+ * Creates a new scanner.
+ * There is also java.io.Reader version of this constructor.
+ *
+ * @param in the java.io.Inputstream to read input from.
+ */
+ public GaussianLexer(java.io.InputStream in) {
+ this(new java.io.InputStreamReader(in));
+ }
+
+
+ /**
+ * Refills the input buffer.
+ *
+ * @return <code>false</code>, iff there was new input.
+ *
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ private boolean zzRefill() throws java.io.IOException {
+
+ /* first: make room (if you can) */
+ if (zzStartRead > 0) {
+ System.arraycopy(zzBuffer, zzStartRead,
+ zzBuffer, 0,
+ zzEndRead-zzStartRead);
+
+ /* translate stored positions */
+ zzEndRead-= zzStartRead;
+ zzCurrentPos-= zzStartRead;
+ zzMarkedPos-= zzStartRead;
+ zzStartRead = 0;
+ }
+
+ /* is the buffer big enough? */
+ if (zzCurrentPos >= zzBuffer.length) {
+ /* if not: blow it up */
+ char newBuffer[] = new char[zzCurrentPos*2];
+ System.arraycopy(zzBuffer, 0, newBuffer, 0, zzBuffer.length);
+ zzBuffer = newBuffer;
+ }
+
+ /* finally: fill the buffer with new input */
+ int numRead = zzReader.read(zzBuffer, zzEndRead,
+ zzBuffer.length-zzEndRead);
+
+ if (numRead > 0) {
+ zzEndRead+= numRead;
+ return false;
+ }
+ // unlikely but not impossible: read 0 characters, but not at end of stream
+ if (numRead == 0) {
+ int c = zzReader.read();
+ if (c == -1) {
+ return true;
+ } else {
+ zzBuffer[zzEndRead++] = (char) c;
+ return false;
+ }
+ }
+
+ // numRead < 0
+ return true;
+ }
+
+
+ /**
+ * Closes the input stream.
+ */
+ public final void yyclose() throws java.io.IOException {
+ zzAtEOF = true; /* indicate end of file */
+ zzEndRead = zzStartRead; /* invalidate buffer */
+
+ if (zzReader != null)
+ zzReader.close();
+ }
+
+
+ /**
+ * Resets the scanner to read from a new input stream.
+ * Does not close the old reader.
+ *
+ * All internal variables are reset, the old input stream
+ * <b>cannot</b> be reused (internal buffer is discarded and lost).
+ * Lexical state is set to <tt>ZZ_INITIAL</tt>.
+ *
+ * @param reader the new input stream
+ */
+ public final void yyreset(java.io.Reader reader) {
+ zzReader = reader;
+ zzAtBOL = true;
+ zzAtEOF = false;
+ zzEOFDone = false;
+ zzEndRead = zzStartRead = 0;
+ zzCurrentPos = zzMarkedPos = 0;
+ yyline = yychar = yycolumn = 0;
+ zzLexicalState = YYINITIAL;
+ }
+
+
+ /**
+ * Returns the current lexical state.
+ */
+ public final int yystate() {
+ return zzLexicalState;
+ }
+
+
+ /**
+ * Enters a new lexical state
+ *
+ * @param newState the new lexical state
+ */
+ public final void yybegin(int newState) {
+ zzLexicalState = newState;
+ }
+
+
+ /**
+ * Returns the text matched by the current regular expression.
+ */
+ public final String yytext() {
+ return new String( zzBuffer, zzStartRead, zzMarkedPos-zzStartRead );
+ }
+
+
+ /**
+ * Returns the character at position <tt>pos</tt> from the
+ * matched text.
+ *
+ * It is equivalent to yytext().charAt(pos), but faster
+ *
+ * @param pos the position of the character to fetch.
+ * A value from 0 to yylength()-1.
+ *
+ * @return the character at position pos
+ */
+ public final char yycharat(int pos) {
+ return zzBuffer[zzStartRead+pos];
+ }
+
+
+ /**
+ * Returns the length of the matched text region.
+ */
+ public final int yylength() {
+ return zzMarkedPos-zzStartRead;
+ }
+
+
+ /**
+ * Reports an error that occured while scanning.
+ *
+ * In a wellformed scanner (no or only correct usage of
+ * yypushback(int) and a match-all fallback rule) this method
+ * will only be called with things that "Can't Possibly Happen".
+ * If this method is called, something is seriously wrong
+ * (e.g. a JFlex bug producing a faulty scanner etc.).
+ *
+ * Usual syntax/scanner level error handling should be done
+ * in error fallback rules.
+ *
+ * @param errorCode the code of the errormessage to display
+ */
+ private void zzScanError(int errorCode) {
+ String message;
+ try {
+ message = ZZ_ERROR_MSG[errorCode];
+ }
+ catch (ArrayIndexOutOfBoundsException e) {
+ message = ZZ_ERROR_MSG[ZZ_UNKNOWN_ERROR];
+ }
+
+ throw new Error(message);
+ }
+
+
+ /**
+ * Pushes the specified amount of characters back into the input stream.
+ *
+ * They will be read again by then next call of the scanning method
+ *
+ * @param number the number of characters to be read again.
+ * This number must not be greater than yylength()!
+ */
+ public void yypushback(int number) {
+ if ( number > yylength() )
+ zzScanError(ZZ_PUSHBACK_2BIG);
+
+ zzMarkedPos -= number;
+ }
+
+
+ /**
+ * Contains user EOF-code, which will be executed exactly once,
+ * when the end of file is reached
+ */
+ private void zzDoEOF() throws java.io.IOException {
+ if (!zzEOFDone) {
+ zzEOFDone = true;
+ yyclose();
+ }
+ }
+
+
+ /**
+ * Resumes scanning until the next regular expression is matched,
+ * the end of input is encountered or an I/O-Error occurs.
+ *
+ * @return the next token
+ * @exception java.io.IOException if any I/O-Error occurs
+ */
+ public java_cup.runtime.Symbol next_token() throws java.io.IOException {
+ int zzInput;
+ int zzAction;
+
+ // cached fields:
+ int zzCurrentPosL;
+ int zzMarkedPosL;
+ int zzEndReadL = zzEndRead;
+ char [] zzBufferL = zzBuffer;
+ char [] zzCMapL = ZZ_CMAP;
+
+ int [] zzTransL = ZZ_TRANS;
+ int [] zzRowMapL = ZZ_ROWMAP;
+ int [] zzAttrL = ZZ_ATTRIBUTE;
+
+ while (true) {
+ zzMarkedPosL = zzMarkedPos;
+
+ zzAction = -1;
+
+ zzCurrentPosL = zzCurrentPos = zzStartRead = zzMarkedPosL;
+
+ zzState = ZZ_LEXSTATE[zzLexicalState];
+
+
+ zzForAction: {
+ while (true) {
+
+ if (zzCurrentPosL < zzEndReadL)
+ zzInput = zzBufferL[zzCurrentPosL++];
+ else if (zzAtEOF) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ // store back cached positions
+ zzCurrentPos = zzCurrentPosL;
+ zzMarkedPos = zzMarkedPosL;
+ boolean eof = zzRefill();
+ // get translated positions and possibly new buffer
+ zzCurrentPosL = zzCurrentPos;
+ zzMarkedPosL = zzMarkedPos;
+ zzBufferL = zzBuffer;
+ zzEndReadL = zzEndRead;
+ if (eof) {
+ zzInput = YYEOF;
+ break zzForAction;
+ }
+ else {
+ zzInput = zzBufferL[zzCurrentPosL++];
+ }
+ }
+ int zzNext = zzTransL[ zzRowMapL[zzState] + zzCMapL[zzInput] ];
+ if (zzNext == -1) break zzForAction;
+ zzState = zzNext;
+
+ int zzAttributes = zzAttrL[zzState];
+ if ( (zzAttributes & 1) == 1 ) {
+ zzAction = zzState;
+ zzMarkedPosL = zzCurrentPosL;
+ if ( (zzAttributes & 8) == 8 ) break zzForAction;
+ }
+
+ }
+ }
+
+ // store back cached position
+ zzMarkedPos = zzMarkedPosL;
+
+ switch (zzAction < 0 ? zzAction : ZZ_ACTION[zzAction]) {
+ case 17:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found Gaussian 98");
+ yybegin(ITER);
+ return new Symbol(GaussianSym.FOUNDITER);
+ }
+ case 19: break;
+ case 12:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found RHF");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 20: break;
+ case 8:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found rhf");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 21: break;
+ case 2:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found hf");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 22: break;
+ case 16:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found geom");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 23: break;
+ case 10:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found opt ");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 24: break;
+ case 7:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found RHF");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 25: break;
+ case 3:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found G1");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 26: break;
+ case 18:
+ { yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.SCFDONE);
+ }
+ case 27: break;
+ case 13:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found uhf");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 28: break;
+ case 9:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found uhf");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 29: break;
+ case 11:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP2");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 30: break;
+ case 4:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found rhf");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 31: break;
+ case 15:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found scf=");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype2"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(IGNOREALL);
+ return new Symbol(GaussianSym.RUNTYP1);
+ }
+ case 32: break;
+ case 6:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP4");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 33: break;
+ case 5:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found MP2");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 34: break;
+ case 14:
+ { if (Settings.DEBUG) System.out.println("GaussianFlex: Found opt ");
+ if (Settings.DEBUG) System.out.println(yytext());
+ try{
+ PrintStream temp = new PrintStream(new FileOutputStream("runtype1"));
+ temp.print(yytext());
+ System.out.println(yytext());}
+ catch (IOException ie){ System.out.println("Error in Gaussian Lexer");}
+
+ yybegin(ITER1);
+ return new Symbol(GaussianSym.RUNTYP);
+ }
+ case 35: break;
+ case 1:
+ {
+ }
+ case 36: break;
+ default:
+ if (zzInput == YYEOF && zzStartRead == zzCurrentPos) {
+ zzAtEOF = true;
+ zzDoEOF();
+ { return new java_cup.runtime.Symbol(GaussianSym.EOF); }
+ }
+ else {
+ zzScanError(ZZ_NO_MATCH);
+ }
+ }
+ }
+ }
+
+ /**
+ * Converts an int token code into the name of the
+ * token by reflection on the cup symbol class/interface sym
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ private String getTokenName(int token) {
+ try {
+ java.lang.reflect.Field [] classFields = GaussianSym.class.getFields();
+ for (int i = 0; i < classFields.length; i++) {
+ if (classFields[i].getInt(null) == token) {
+ return classFields[i].getName();
+ }
+ }
+ } catch (Exception e) {
+ e.printStackTrace(System.err);
+ }
+
+ return "UNKNOWN TOKEN";
+ }
+
+ /**
+ * Same as next_token but also prints the token to standard out
+ * for debugging.
+ *
+ * This code was contributed by Karl Meissner <me...@yahoo.com>
+ */
+ public java_cup.runtime.Symbol debug_next_token() throws java.io.IOException {
+ java_cup.runtime.Symbol s = next_token();
+ System.out.println( " --"+ yytext() + "--" + getTokenName(s.sym) + "--");
+ return s;
+ }
+
+ /**
+ * Runs the scanner on input files.
+ *
+ * This is a standalone scanner, it will print any unmatched
+ * text to System.out unchanged.
+ *
+ * @param argv the command line, contains the filenames to run
+ * the scanner on.
+ */
+ public static void main(String argv[]) {
+ if (argv.length == 0) {
+ System.out.println("Usage : java GaussianLexer <inputfile>");
+ }
+ else {
+ for (int i = 0; i < argv.length; i++) {
+ GaussianLexer scanner = null;
+ try {
+ scanner = new GaussianLexer( new java.io.FileReader(argv[i]) );
+ while ( !scanner.zzAtEOF ) scanner.next_token();
+ }
+ catch (java.io.FileNotFoundException e) {
+ System.out.println("File not found : \""+argv[i]+"\"");
+ }
+ catch (java.io.IOException e) {
+ System.out.println("IO error scanning file \""+argv[i]+"\"");
+ System.out.println(e);
+ }
+ catch (Exception e) {
+ System.out.println("Unexpected exception:");
+ e.printStackTrace();
+ }
+ }
+ }
+ }
+
+
+}
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java
new file mode 100644
index 0000000..ea61ef8
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianParser.java
@@ -0,0 +1,187 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gaussian;
+
+
+import java_cup.runtime.lr_parser;
+import org.apache.airavata.datacat.parsers.gridchem.GridChemQueueParser;
+
+import java.io.FileReader;
+import java.util.HashMap;
+
+
+public class GaussianParser extends java_cup.runtime.lr_parser implements GridChemQueueParser {
+
+ /** Default constructor. */
+ public GaussianParser() {super();}
+
+ /** Constructor which sets the default scanner. */
+ public GaussianParser(java_cup.runtime.Scanner s) {super(s);}
+
+ /**
+ * Constructor which uses a file reader.
+ */
+ public GaussianParser(final FileReader fileReader) {
+ super(new GaussianLexer(fileReader));
+ }
+
+
+ /** Production table. */
+ protected static final short _production_table[][] =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\003\000\002\003\003\000\002\002\004\000\002\004" +
+ "\005"});
+
+ /** Access to production table. */
+ public short[][] production_table() {return _production_table;}
+
+ /** Parse-action table. */
+ protected static final short[][] _action_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\007\000\004\004\005\001\002\000\004\002\001\001" +
+ "\002\000\004\006\010\001\002\000\004\002\007\001\002" +
+ "\000\004\002\000\001\002\000\004\007\011\001\002\000" +
+ "\004\002\uffff\001\002"});
+
+ /** Access to parse-action table. */
+ public short[][] action_table() {return _action_table;}
+
+ /** <code>reduce_goto</code> table. */
+ protected static final short[][] _reduce_table =
+ lr_parser.unpackFromStrings(new String[]{
+ "\000\007\000\006\003\005\004\003\001\001\000\002\001" +
+ "\001\000\002\001\001\000\002\001\001\000\002\001\001" +
+ "\000\002\001\001\000\002\001\001"});
+
+ /** Access to <code>reduce_goto</code> table. */
+ public short[][] reduce_table() {return _reduce_table;}
+
+ /** Instance of action encapsulation class. */
+ protected CUP$parser$actions action_obj;
+
+ /** Action encapsulation object initializer. */
+ protected void init_actions()
+ {
+ action_obj = new CUP$parser$actions(this);
+ }
+
+ /** Invoke a user supplied parse action. */
+ public java_cup.runtime.Symbol do_action(
+ int act_num,
+ java_cup.runtime.lr_parser parser,
+ java.util.Stack stack,
+ int top)
+ throws java.lang.Exception
+ {
+ /* call code in generated class */
+ return action_obj.CUP$parser$do_action(act_num, parser, stack, top);
+ }
+
+ /** Indicates start state. */
+ public int start_state() {return 0;}
+ /** Indicates start production. */
+ public int start_production() {return 1;}
+
+ /** <code>EOF</code> Symbol index. */
+ public int EOF_sym() {return 0;}
+
+ /** <code>error</code> Symbol index. */
+ public int error_sym() {return 1;}
+
+ @Override
+ public HashMap<String, String> getParsedData() throws Exception {
+ parse();
+ return null;
+ }
+}
+
+/** Cup generated class to encapsulate user supplied action code.*/
+class CUP$parser$actions {
+
+
+ //__________________________________
+ public static boolean DEBUG = true;
+
+
+ private final GaussianParser GaussianParser;
+
+ /** Constructor */
+ CUP$parser$actions(GaussianParser GaussianParser) {
+ this.GaussianParser = GaussianParser;
+ }
+
+ /** Method with the actual generated action code. */
+ public final java_cup.runtime.Symbol CUP$parser$do_action(
+ int CUP$parser$act_num,
+ java_cup.runtime.lr_parser CUP$parser$parser,
+ java.util.Stack CUP$parser$stack,
+ int CUP$parser$top)
+ throws java.lang.Exception
+ {
+ /* Symbol object for return from actions */
+ java_cup.runtime.Symbol CUP$parser$result;
+
+ /* select the action based on the action number */
+ switch (CUP$parser$act_num)
+ {
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 2: // scfintro ::= FOUNDITER RUNTYP RUNTYP1
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gaussian: found FOUNDITER ");
+ CUP$parser$result = new java_cup.runtime.Symbol(2/*scfintro*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-2)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 1: // $START ::= startpt EOF
+ {
+ Object RESULT = null;
+ int start_valleft = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left;
+ int start_valright = ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).right;
+ Object start_val = (Object)((java_cup.runtime.Symbol) CUP$parser$stack.elementAt(CUP$parser$top-1)).value;
+ RESULT = start_val;
+ CUP$parser$result = new java_cup.runtime.Symbol(0/*$START*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-1)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ /* ACCEPT */
+ CUP$parser$parser.done_parsing();
+ return CUP$parser$result;
+
+ /*. . . . . . . . . . . . . . . . . . . .*/
+ case 0: // startpt ::= scfintro
+ {
+ Object RESULT = null;
+ if (DEBUG) System.out.println("CUP:gaussian: end of parse tree ");
+
+
+ CUP$parser$result = new java_cup.runtime.Symbol(1/*startpt*/, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).left, ((java_cup.runtime.Symbol)CUP$parser$stack.elementAt(CUP$parser$top-0)).right, RESULT);
+ }
+ return CUP$parser$result;
+
+ /* . . . . . .*/
+ default:
+ throw new Exception(
+ "Invalid action number found in internal parse table");
+
+ }
+ }
+}
+
http://git-wip-us.apache.org/repos/asf/airavata-sandbox/blob/4231ac35/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java
----------------------------------------------------------------------
diff --git a/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java
new file mode 100644
index 0000000..25f22f0
--- /dev/null
+++ b/datacat/parsers/src/main/java/org/apache/airavata/datacat/parsers/gridchem/gaussian/GaussianSym.java
@@ -0,0 +1,37 @@
+/*
+*
+* Licensed to the Apache Software Foundation (ASF) under one
+* or more contributor license agreements. See the NOTICE file
+* distributed with this work for additional information
+* regarding copyright ownership. The ASF licenses this file
+* to you under the Apache License, Version 2.0 (the
+* "License"); you may not use this file except in compliance
+* with the License. You may obtain a copy of the License at
+*
+* http://www.apache.org/licenses/LICENSE-2.0
+*
+* Unless required by applicable law or agreed to in writing,
+* software distributed under the License is distributed on an
+* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+* KIND, either express or implied. See the License for the
+* specific language governing permissions and limitations
+* under the License.
+*
+*/
+package org.apache.airavata.datacat.parsers.gridchem.gaussian;
+//----------------------------------------------------
+// The following code was generated by CUP v0.10k
+// Wed Sep 10 09:00:14 IST 2014
+//----------------------------------------------------
+
+/** CUP generated class containing symbol constants. */
+public class GaussianSym {
+ /* terminals */
+ public static final int RUNTYP = 4;
+ public static final int SCFDONE = 3;
+ public static final int error = 1;
+ public static final int FOUNDITER = 2;
+ public static final int RUNTYP1 = 5;
+ public static final int EOF = 0;
+}
+