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Posted to github@beam.apache.org by GitBox <gi...@apache.org> on 2022/12/01 19:46:55 UTC
[GitHub] [beam] mwallace582 opened a new issue, #24470: [Bug]: Silent Dataflow failure upon glibc library mismatch
mwallace582 opened a new issue, #24470:
URL: https://github.com/apache/beam/issues/24470
### What happened?
Hi Apache Beam team,
I've recently identified an issue with using the Beam Go SDK with Google's Dataflow. I've already [filed a bug report with Google](https://issuetracker.google.com/issues/260992167), but I wanted to report it here as well in case there's something to be done in the SDK side.
I'll paste the contents of my liked bug report below:
> Recently, I encountered an issue where I was unable to run any Dataflow pipeline using the Go language SDK. Previously I'd only used Python with Dataflow. I used the `wordcount.go` example pipeline as my test case. I followed the deployment instructions on the Dataflow site and didn't do anything fancy.
>
> Upon deploying the pipeline, the Dataflow console reported that the workers had started successfully and that everything was running fine. Despite this, the pipeline never made any progress whatsoever.
>
> I noticed some errors at the logs when looking at Stackdriver with these filters:
>
> ```
> resource.type="dataflow_step"
> resource.labels.job_id="2022-11-30_13_25_07-7319605715258819834"
> ```
>
> The most concerning log entries were the following:
>
> ```
> "ContainerStatus from runtime service failed" err="rpc error: code = Unknown desc = Error: No such container: 1dd1f5aed1062c9fa85e1437dcbb915a8e3844a5a8de66982aaf4c1471dc492e" containerID="1dd1f5aed1062c9fa85e1437dcbb915a8e3844a5a8de66982aaf4c1471dc492e"
> "getPodContainerStatuses for pod failed" err="rpc error: code = Unknown desc = Error: No such container: 1dd1f5aed1062c9fa85e1437dcbb915a8e3844a5a8de66982aaf4c1471dc492e" pod="default/df-matthew-test-golang-v3-11301257-l37l-harness-6jnd"
> "Error syncing pod, skipping" err="failed to \"StartContainer\" for \"sdk-0-0\" with CrashLoopBackOff: \"back-off 10s restarting failed container=sdk-0-0 pod=df-matthew-test-golang-v3-11301257-l37l-harness-6jnd_default(57e4bc85cfdd8d814463331df622de1a)\"" pod="default/df-matthew-test-golang-v3-11301257-l37l-harness-6jnd" podUID=57e4bc85cfdd8d814463331df622de1a
> "Error syncing pod, skipping" err="failed to \"StartContainer\" for \"sdk-0-0\" with CrashLoopBackOff: \"back-off 20s restarting failed container=sdk-0-0 pod=df-matthew-test-golang-v3-11301257-l37l-harness-6jnd_default(57e4bc85cfdd8d814463331df622de1a)\"" pod="default/df-matthew-test-golang-v3-11301257-l37l-harness-6jnd" podUID=57e4bc85cfdd8d814463331df622de1a
> "Error syncing pod, skipping" err="failed to \"StartContainer\" for \"sdk-0-0\" with CrashLoopBackOff: \"back-off 20s restarting failed container=sdk-0-0 pod=df-matthew-test-golang-v3-11301257-l37l-harness-6jnd_default(57e4bc85cfdd8d814463331df622de1a)\"" pod="default/df-matthew-test-golang-v3-11301257-l37l-harness-6jnd" podUID=57e4bc85cfdd8d814463331df622de1a
> ```
>
> I was stuck here for awhile, not understanding what was going wrong which could explain these Kubernetes errors. After staring at the logs for several hours, I came across these log messages, which were not marked as errors:
>
> ```
>2022/12/01 00:40:02 Provision info:
>pipeline_options:{fields:{key:"beam:option:go_options:v1" value:{struct_value:{fields:...blah..blah}}}}
>2022/12/01 00:40:02 Initializing Go harness: /opt/apache/beam/boot --logging_endpoint=localhost:12370 --control_endpoint=localhost:12371 --artifact_endpoint=localhost:12372 --provision_endpoint=localhost:12373 --semi_persist_dir=/var/opt/google --id=sdk-0-0
> /bin/worker: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by /bin/worker)
> /bin/worker: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /bin/worker)
> 2022/12/01 00:40:02 User program exited: exit status 1
> ignoring event map[container:cc38c9371adfcaff693d3b7bb1791111f7793f6d875eea6e756bb0254433b09e module:libcontainerd namespace:moby topic:/tasks/delete type:*events.TaskDelete]
> ```
>
> Not being an expert on the internals of Dataflow, I didn't know if this was a real error or one of the many benign errors that appear in the Dataflow logs. But I figured that I would assume that these errors were the errors causing my issues, and see if I could quash them.
>
> My development machine has glibc 2.36 installed, and the `apache/beam_go_sdk:2.43.0` docker image has glibc 2.31 installed. Instead of downgrading my glibc version, I did some googling, and found that I could disable Go's dynamic linking by exporting `CGO_ENABLED=0` before deploying the pipeline with go run. This fixed the issue with my pipeline immediately.
>
> I'm fairly new to Go, so I can't say with any certainty that dynamic linking should be disabled by default on all Dataflow Go pipelines, but it is something worth considering. Alternatively, it would be EXTREMELY helpful if Dataflow would have reported this error more clearly in the first place. I don't think that mismatched glibc versions are a particularly rare occurrence, and this subtle error is a huge barrier to entry when using Go with Dataflow.
### Issue Priority
Priority: 2
### Issue Component
Component: sdk-go
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[GitHub] [beam] kennknowles commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by GitBox <gi...@apache.org>.
kennknowles commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1334540366
@lostluck
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[GitHub] [beam] lostluck commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "lostluck (via GitHub)" <gi...@apache.org>.
lostluck commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1517011655
The logging here should no longer be silent due to that previous fix. I beleive that did make it into 2.47.0, releasing soon.
We likely don't want to require users to have CGO disabled, but that would also prevent issues like this I think?
I'm less well versed in that. But I would love that verification so we can put that advice in the cross-compile documentation, or perhaps make the "autobuild and submit" binary mode set that too (though I beleive any env variables would also normally be propagated, so we'd want to respect that setting.)
The linker error is a real issue, and how to resolve it might not be obvious to users. Ideally we have the boot loader additional log when this kind of error is detected, the CGO workaround (if verified) , or point to instructions (on the cross-comp page) on how fix the issue.
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[GitHub] [beam] lostluck commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "lostluck (via GitHub)" <gi...@apache.org>.
lostluck commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1487752497
Also the boot.go will never have any meaningful associated bundle_id and transform_id since those require a live pipeline execution, and those ids are only meaningful to the runner that generated them.
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[GitHub] [beam] jrmccluskey closed issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "jrmccluskey (via GitHub)" <gi...@apache.org>.
jrmccluskey closed issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
URL: https://github.com/apache/beam/issues/24470
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[GitHub] [beam] lostluck commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "lostluck (via GitHub)" <gi...@apache.org>.
lostluck commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1421487446
Issue: #25314 is also noting this particular problem with the boot loaders.
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[GitHub] [beam] cozos commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "cozos (via GitHub)" <gi...@apache.org>.
cozos commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1522848068
Thanks so much!
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[GitHub] [beam] lostluck commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by GitBox <gi...@apache.org>.
lostluck commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1335654582
So there are two issues here.
1. Turns out that debian-bullseye as a base container might not have the latest and greatest glibc (this is WAI probably, due to debian's ethos).
2. Boot loader container messages aren't discoverable.
The first has a few options: Option 1: Custom containers. That's always an option and lets any container be used as the worker container, as long as the entrypoint is the bootloader to handle the rest of the container contract.
Option 2: Disable linking by turning off CGO, as already described.
We aren't likely to move off of debian as the container base anytime soon, but we could expand https://beam.apache.org/documentation/sdks/go-cross-compilation/ with a bit of this information.
The second is that we had to *hunt* for the root cause. That's never good. It hurts everyone. Ideally, the error is elevated properly, and tells you where to find answers.
In this case, since we have dedicated loaders per language, they could point to relevant places on the beam site, like https://beam.apache.org/documentation/sdks/go-cross-compilation/ or similar. That's where the documentation for this should live. As for how to elevate it.
---------
All uses of the Beam Go SDK use the same containers, so the fix would be in the repo.
In principle, the boot loader could connect to the FnAPI logging service to make the failure announcement. That should elevate it in the Dataflow logs (and all other SDK uses with a FnAPI). It's not entirely clear to me why we don't already beyond it's not been needed before.
So the initial arg log is here: https://github.com/apache/beam/blob/master/sdks/go/container/boot.go#L100
And when the exec call fails, it's logged here: https://github.com/apache/beam/blob/master/sdks/go/container/boot.go#L169
I'm not familiar with how the logging gets elevated to errors/fatals/warnings etc from the container logs. The boot loaders don't use anything particularly fancy for logging, just the standard library "log" package, so it wouldn't hurt to upgrade it somewhat. I've already been considering starting integration with the hopefully upcoming structured log library for Go...
So that would be my suggestion: We switch the boot loaders to connect to the FnAPI log service, and direct users to a beam site page where we can catalog issues and solutions.
----
The bit that we don't have help for is relating the actual link error easily. Redirecting the binary's StdErr might work, but could lead to other noise going across the logging interface, or other duplication or overrun.
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[GitHub] [beam] mwallace582 commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by GitBox <gi...@apache.org>.
mwallace582 commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1335540863
Note that I've just added detailed instructions on reproducing this issue to the linked bug report.
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[GitHub] [beam] cozos commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "cozos (via GitHub)" <gi...@apache.org>.
cozos commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1438333424
See https://github.com/cozos/beam/pull/3/files for first attempt
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[GitHub] [beam] lostluck commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "lostluck (via GitHub)" <gi...@apache.org>.
lostluck commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1487749770
@cozos Sorry for not seeing that sooner.
That attempt would work, but it makes every SDK depend on a Go SDK specific harness detail. Those are best kept isolated. The boot container doesn't need anything nearly as involved to log over the FnAPI, so it can be simpler in order to keep it debuggable.
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[GitHub] [beam] jrmccluskey commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "jrmccluskey (via GitHub)" <gi...@apache.org>.
jrmccluskey commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1661092914
Looks like this never got closed because of how GitHub parses the "fixes" string in PR descriptions. Fixed by #26035
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[GitHub] [beam] cozos commented on issue #24470: [Bug][Go SDK]: Silent Dataflow failure upon glibc library mismatch
Posted by "cozos (via GitHub)" <gi...@apache.org>.
cozos commented on issue #24470:
URL: https://github.com/apache/beam/issues/24470#issuecomment-1426908368
Some thoughts:
* In `boot.go` we only have `stdout` and `stderr` but no application level information regarding the severity of the logs. So basically, we don't know what severity of `stderr` should be - it could contain the root cause for failure (i.e. process termination) but it could also contain warnings and random diagnostic output as per POSIX standard.
* One way to do this is to send `stderr` as ERROR or FATAL if the process crashed, and INFO otherwise, although I don't love this.
* We also lose some context in boot.go - things bundle_id and transform_id that could tell you where the error happened.
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