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Posted to notifications@ctakes.apache.org by "Saravanan Selvamohan (Jira)" <ji...@apache.org> on 2020/03/13 11:47:00 UTC

[jira] [Created] (CTAKES-540) How to run DrugMentionAnnotator.xml?

Saravanan Selvamohan created CTAKES-540:
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             Summary: How to run DrugMentionAnnotator.xml?
                 Key: CTAKES-540
                 URL: https://issues.apache.org/jira/browse/CTAKES-540
             Project: cTAKES
          Issue Type: Bug
          Components: ctakes-drug-ner
    Affects Versions: 4.0.0
         Environment: Ubuntu 19.04
            Reporter: Saravanan Selvamohan
             Fix For: 4.0.0


I am trying to run DrugMentionAnnotator.xml for a sample clinical text document. I ran ./runctakesCPE.sh and I added engines in the order as follows.

1.TokenizerAnnotator

2.ContentDependentTokenizer

3.POSTagger

4.Chunker

5.DictionaryLookupAnnotator

6.Assertion(GenericAttributeAnalysisEngine)

7.DrugMentionAnnotator

 

Yet I unable to get the required results. Is there any specified flow to run engines and get the output from the DrugMentionAnnotator

 



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