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Posted to commits@ctakes.apache.org by dl...@apache.org on 2012/10/18 19:58:53 UTC
svn commit: r1399752 [3/5] - in
/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine:
DegreeOfRelationExtractorAnnotator.xml
EntityMentionPairRelationExtractorAnnotator.xml
ModifierExtractorAnnotator.xml RelationExtractorAggregate.xml
Modified: incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml?rev=1399752&r1=1399751&r2=1399752&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml (original)
+++ incubator/ctakes/trunk/ctakes-relation-extractor/desc/analysis_engine/EntityMentionPairRelationExtractorAnnotator.xml Thu Oct 18 17:58:53 2012
@@ -1,24 +1,4 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
- Licensed to the Apache Software Foundation (ASF) under one
- or more contributor license agreements. See the NOTICE file
- distributed with this work for additional information
- regarding copyright ownership. The ASF licenses this file
- to you under the Apache License, Version 2.0 (the
- "License"); you may not use this file except in compliance
- with the License. You may obtain a copy of the License at
-
- http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing,
- software distributed under the License is distributed on an
- "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- KIND, either express or implied. See the License for the
- specific language governing permissions and limitations
- under the License.
-
--->
<analysisEngineDescription xmlns="http://uima.apache.org/resourceSpecifier">
<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
<primitive>true</primitive>
@@ -106,6 +86,12 @@
</value>
</nameValuePair>
<nameValuePair>
+ <name>org.cleartk.classifier.CleartkAnnotator.dataWriterFactoryClassName</name>
+ <value>
+ <string>org.cleartk.classifier.jar.DefaultDataWriterFactory</string>
+ </value>
+ </nameValuePair>
+ <nameValuePair>
<name>ProbabilityOfKeepingANegativeExample</name>
<value>
<float>0.5</float>
@@ -114,7 +100,7 @@
<nameValuePair>
<name>org.cleartk.classifier.jar.GenericJarClassifierFactory.classifierJarPath</name>
<value>
- <string>org/apache/ctakes/relationextractor/models/em_pair/model.jar</string>
+ <string>resources/models/em_pair/model.jar</string>
</value>
</nameValuePair>
<nameValuePair>
@@ -124,7 +110,1917 @@
</value>
</nameValuePair>
</configurationParameterSettings>
- <typeSystemDescription/>
+ <typeSystemDescription>
+ <types>
+ <typeDescription>
+ <name>org.apache.ctakes.assertion.medfacts.types.Assertion</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>assertionType</name>
+ <description>assertion type -- one of present, absent, possible, conditional, hypothetical, or assocated_with_someone_else</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>associatedConcept</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.assertion.medfacts.types.Concept</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.assertion.medfacts.types.Concept</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>conceptType</name>
+ <description>the concept type -- one of problem, treatment, or test</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>conceptText</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>externalId</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>originalEntityExternalId</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>label</name>
+ <description/>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>tree</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.AnatomicalSite</name>
+ <description>A body part or area, corresponding to the UMLS semantic group of Anatomy. An Entity based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Entity</supertypeName>
+ <features>
+ <featureDescription>
+ <name>bodyLaterality</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodySide</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Attribute</name>
+ <description>The semantic encapsulation of a modifer. E.g., for Clinical Elements, Attributes may be used to specify Body Side for a Procedure.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</name>
+ <description>The proximity of the location in anatomical terms (distal, proximal, superior, anterior and etc.). This is finer-grained to allow combinations of values.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.BodySide</name>
+ <description>Value set: unmarked (default), left, right, bilateral</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Course</name>
+ <description>An indication of progress or decline of a condition. Value set: unmarked (default), changed, increased, decreased, improved, worsened, resolved</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Date</name>
+ <description>A normalized form for dates, namely with day, month, and year. A subtype of Element but may not use all inherited attributes.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+ <features>
+ <featureDescription>
+ <name>day</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>month</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>year</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.DiseaseDisorder</name>
+ <description>This is an Event from the UMLS semantic group of Disorders (except that Sign and Symptom types are separate). Based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <features>
+ <featureDescription>
+ <name>alleviatingFactor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>associatedSignSymptom</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ManifestationOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodyLaterality</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodySide</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodyLocation</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>course</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Course</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>endTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>exacerbatingFactor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>startTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>relativeTemporalContext</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Element</name>
+ <description>A basic semantic unit that refers to something in the real world, including Entities, Events, Attributes, Dates. Element inherits from uima.cas.TOP to combine textual mentions of these real-world objects.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>id</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>ontologyConcept</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>mentions</name>
+ <description/>
+ <rangeTypeName>uima.cas.FSArray</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation</elementType>
+ </featureDescription>
+ <featureDescription>
+ <name>discoveryTechnique</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>confidence</name>
+ <description/>
+ <rangeTypeName>uima.cas.Double</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>conditional</name>
+ <description/>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>generic</name>
+ <description/>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>subject</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>polarity</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>uncertainty</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Entity</name>
+ <description>A real-world entity such as a body part. For example, multiple Procedures may have the same AnatomicalSite entity for their locations.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Event</name>
+ <description>A real-world event; similar to Entity, but may bear some temporal properties and relationships. In the constrained clinical context, many concepts are discussed as instances with some temporal component, e.g., Medications, Labs.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+ <features>
+ <featureDescription>
+ <name>properties</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.EventProperties</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.EventProperties</name>
+ <description>A set of mostly temporal properties that are unique to Events.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>contextualModality</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>contextualAspect</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>permanence</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>category</name>
+ <description>Type of Event.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>aspect</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>docTimeRel</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>degree</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>polarity</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Lab</name>
+ <description>This is an Event from the UMLS semantic group of Laboratory Procedures. Based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <features>
+ <featureDescription>
+ <name>abnormalInterpretation</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>deltaFlag</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>labValue</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabValue</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>ordinalInterpretation</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.DegreeOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>referenceRangeNarrative</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.LabReferenceRange</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.LabDeltaFlag</name>
+ <description>An indicator to warn that the laboratory test result has changed significantly from the previous identical laboratory test result.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.LabReferenceRange</name>
+ <description>Holds a narrative (i.e. string) reference range</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.LabValue</name>
+ <description>Quantitative results of a laboratory, with number and unit.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>unit</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Medication</name>
+ <description>This is an Event from the UMLS semantic group of Chemicals and Drugs, pruned by RxNORM source. Based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <features>
+ <featureDescription>
+ <name>medicationFrequency</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationFrequency</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationDuration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationDuration</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationRoute</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationRoute</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationStatusChange</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationDosage</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationDosage</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationStrength</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationStrength</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>medicationForm</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.MedicationForm</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>startDate</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Date</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>endDate</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Date</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>relativeTemporalContext</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationDosage</name>
+ <description>Dosage indicates how much of a prescribed drug should be taken. E.g. "one" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationDuration</name>
+ <description>The amount of time after which a medication should stop being used, e.g., "2 weeks" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationForm</name>
+ <description>Form of this medication. Value set includes tablet, capsule, liquid, inhalant, gel, other, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationFrequency</name>
+ <description>How often a medication should be used. e.g., BID or b.i.d. or "twice-a-day" would have a number=2 and unit=day.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>unit</name>
+ <description>The periodic unit used, e.g day, month, hour, etc.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationRoute</name>
+ <description>Means by which the medication was taken or administered. Value set includes Topical, Enteral_Oral, Parenteral_Intravenous, Other, undetermined, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationStatusChange</name>
+ <description>Status refers to the whether the medication is currently being taken or not. Value set: start, stop, increase, decrease, no change.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description>Indicates the change status of 'stop', 'start', 'increase', 'decrease', or 'noChange'.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.MedicationStrength</name>
+ <description>Strength indicates the strength number and unit of the prescribed drug. E.g. "5 mg" in "one 5 mg tablet twice-a-day for 2 weeks"</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>number</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>unit</name>
+ <description>the unit of measurement</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</name>
+ <description>Ontologies (e.g., SNOMED-CT) provide an expert semantic representation for concepts. They typically assign a code to a concept and normalize across various textual representations of that concept.
+IdentifiedAnnotation and Elements may point to these normalized concept representations to indicate clinical concepts.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.OntologyConcept</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>codingScheme</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>code</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>oid</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>oui</name>
+ <description>holds the rxnorm unique identifier for a given drug
+ mention.
+ TODO: change this attribute because of name clash (UMLS/SNOMED)</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Procedure</name>
+ <description>This is an Event from the UMLS semantic group of Procedures (except that Laboratory procedures are separate). Based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <features>
+ <featureDescription>
+ <name>bodyLaterality</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodySide</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodyLocation</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>procedureDevice</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.ProcedureDevice</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>endTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>method</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.ProcedureMethod</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>startTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>relativeTemporalContext</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.ProcedureDevice</name>
+ <description>Corresponds to the UMLS Devices semantic group: medical device and research device.
+Example: arterial line has a Medical Device semantic type. This is qualifying information on how a procedure was done.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.ProcedureMethod</name>
+ <description>The way or the equipment used to give or administration something (medication, test). This corresponds to the Procedures UMLS semantic group.
+More qualifying information on how the procedure was done.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Severity</name>
+ <description>An explicitly-mentioned indication of the seriousness of a condition. Value Set: unmarked (default), severe, moderate, slight</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Attribute</supertypeName>
+ <features>
+ <featureDescription>
+ <name>value</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.SignSymptom</name>
+ <description>This is an Event from the UMLS semantic group of Sign or Symtom. Based on generic Clinical Element Models (CEMs)</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Event</supertypeName>
+ <features>
+ <featureDescription>
+ <name>alleviatingFactor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodyLaterality</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodyLaterality</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodySide</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.BodySide</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>bodyLocation</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.LocationOf</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>course</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Course</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>duration</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>endTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>exacerbatingFactor</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>severity</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>startTime</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Time</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>relativeTemporalContext</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.TemporalRelation</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.Time</name>
+ <description>A normalized form for Time annotations. Inherits from Element, but some fields may be unused.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.Element</supertypeName>
+ <features>
+ <featureDescription>
+ <name>normalizedForm</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.refsem.UmlsConcept</name>
+ <description>Concepts in the Unified Medical Language System (UMLS) Metathesaurus have a concept unique identifier (CUI) and a type unique identifier (TUI, i.e., semantic type) which are curated, normalized codes. For example, "pain" would have a cui=C0030193 and tui=T184.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.UmlsConcept</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.refsem.OntologyConcept</supertypeName>
+ <features>
+ <featureDescription>
+ <name>cui</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>tui</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.Affects</name>
+ <description>A UMLS relation between clinical elements.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.AttributeRelation</name>
+ <description>A real-world relationship between an Element and an Attribute.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</name>
+ <description>A super-type for relationships between two spans of text.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>arg1</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.RelationArgument</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>arg2</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.relation.RelationArgument</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.CollectionTextRelation</name>
+ <description/>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>members</name>
+ <description>A super-type for relationships between multiple spans of text.</description>
+ <rangeTypeName>uima.cas.FSList</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.relation.RelationArgument</elementType>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.CoreferenceRelation</name>
+ <description>A coreference pair, with antecedent as arg1 and anaphor as arg2</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.DegreeOf</name>
+ <description>A UMLS relation between an attribute and an entity/event.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.AttributeRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.ElementRelation</name>
+ <description>A super-type referring to real-world semantic relationships, e.g., TemporalRelations between two Events.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.Relation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.LocationOf</name>
+ <description>A UMLS relation between clinical elements.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.ManifestationOf</name>
+ <description>A UMLS relation between clinical elements.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.Relation</name>
+ <description>A superclass for semantic relationships between Elements. For example, one might consider TemporalRelations or UMLSRelations between a Medication and a Disorder. The "category" feature indicates what kind of relation it is.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>id</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>category</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>discoveryTechnique</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>confidence</name>
+ <description/>
+ <rangeTypeName>uima.cas.Double</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>polarity</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>uncertainty</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.RelationArgument</name>
+ <description>Relations are like lines connecting two or more endpoints. RelationArguments are used as endpoints that are text spans via the "argument" feature. The directed relations should specify a "role" feature.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>id</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>argument</name>
+ <description/>
+ <rangeTypeName>uima.tcas.Annotation</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>role</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>participatesIn</name>
+ <description/>
+ <rangeTypeName>uima.cas.FSList</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.relation.Relation</elementType>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.ResultOf</name>
+ <description>A UMLS relation between clinical elements.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.TemporalRelation</name>
+ <description>Based on ISO TimeML's TLINK.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.ElementRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.relation.UMLSRelation</name>
+ <description>A biomedical relationship between two spans of text that have been mapped to UMLS concepts. Inherits "category" from Relation, with values such as affects, causes, complicates, contraindicates, degree_of, etc.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.structured.Demographics</name>
+ <description>Demographic information about the patient in a clinical document. Typically comes from structured metadata.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>birthDate</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>deathDate</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>gender</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>firstName</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>middleName</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>lastName</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>firstNameSoundex</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>lastNameSoundex</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.structured.DocumentID</name>
+ <description>Equivalent to cTAKES: org.apache.ctakes.typesystem.type.DocumentID, but its supertype changed to uima.cas.TOP</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>documentID</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.structured.Metadata</name>
+ <description>Structured data that captures information about the document, patient, or context of the clinical text.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>patientID</name>
+ <description/>
+ <rangeTypeName>uima.cas.Long</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>providerID</name>
+ <description/>
+ <rangeTypeName>uima.cas.LongArray</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceData</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.structured.SourceData</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>demographics</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.structured.Demographics</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.structured.SourceData</name>
+ <description>Information about the caregiving setting for the clinical document. Typically comes from structured metadata.</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>noteTypeCode</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>noteSubTypeCode</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>authorSpecialty</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>documentStandard</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceInstanceId</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceRevisionNbr</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceRevisionDate</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceOriginalDate</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceInstitution</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceEncounterId</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>sourceApplication</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.ADJP</name>
+ <description>An adjective phrase
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADJP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.ADVP</name>
+ <description>An adverb phrase
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.ADVP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.BaseToken</name>
+ <description>A supertype for tokens subsuming word, punctuation, symbol, newline, contraction, or number. Includes parts of speech, which are grammatical categories, e.g., noun (NN) or preposition (IN) that use Penn Treebank tags with a few additions.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.BaseToken</description>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>tokenNumber</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>normalizedForm</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>partOfSpeech</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>lemmaEntries</name>
+ <description/>
+ <rangeTypeName>uima.cas.FSList</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.syntax.Lemma</elementType>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.CONJP</name>
+ <description>A phrase-level conjunction
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.CONJP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.Chunk</name>
+ <description>Chunks are syntactic groupings of tokens, and are the results of a shallow parser (chunker). Possible chunkTypes follow Penn Treebank guidelines, e.g., noun phrase (NP) or prepositional phrase (PP)
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.Chunk</description>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>chunkType</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode</name>
+ <description>A dependency parser node in the CONLL-X format, namely, where each node is a token with 10 fields.</description>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>id</name>
+ <description>The token's position in the sentence. The ROOT node, present in every dependency parse, has id=0.</description>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>form</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>lemma</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>cpostag</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>postag</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>feats</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>head</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>deprel</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>phead</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.syntax.ConllDependencyNode</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>pdeprel</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.ContractionToken</name>
+ <description>Differentiates a token as being a contraction rather than a punctuation, symbol, newline, word, or number.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.ContractionToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.INTJ</name>
+ <description>An interjection
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.INTJ</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.LST</name>
+ <description>A list item, usually intra-sentential
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.LST</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.Lemma</name>
+ <description>Stores a lemma (canonical form of a token). Inherits from uima.cas.TOP, allowing for reuse of standardized forms across the CAS.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.Lemma</description>
+ <supertypeName>uima.cas.TOP</supertypeName>
+ <features>
+ <featureDescription>
+ <name>key</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>posTag</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.NP</name>
+ <description>A noun phrase
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.NP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.NewlineToken</name>
+ <description>Differentiates a token as being a newline rather than a punctuation, symbol, contraction, word, or number.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.NewlineToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.NumToken</name>
+ <description>Differentiates a token as being a number rather than a punctuation, symbol, newline, word, or contraction.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.NumToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ <features>
+ <featureDescription>
+ <name>numType</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.O</name>
+ <description/>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.PP</name>
+ <description>A prepositional phrase
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.PRT</name>
+ <description>A particle, e.g., "out" in "rule out"
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.PRT</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.PunctuationToken</name>
+ <description>Differentiates a token as being punctuation rather than a contraction, symbol, newline, word, or number.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.PunctuationToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.SBAR</name>
+ <description>A subordinate clause
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.SBAR</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.StanfordDependency</name>
+ <description>Stanford dependencies provide a representation of grammatical relations between words in a sentence. Stanford dependencies are triplets: name of the relation, governor and dependent.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.relation.BinaryTextRelation</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.SymbolToken</name>
+ <description>Differentiates a token as being a symbol rather than a punctuation, contraction, newline, word, or number.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.SymbolToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode</name>
+ <description>A Penn Treebank Node; as a terminal, there is an associated word, and the index of the word is a feature.</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.TreebankNode</supertypeName>
+ <features>
+ <featureDescription>
+ <name>index</name>
+ <description>The index of this node in the top node's list of terminals.</description>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>tokenIndex</name>
+ <description>The tokenIndex of a terminal is n, where the terminal is the nth token in a sentence. The value -1 means that this terminal does not correspond to a token (because it is a trace.) We assume that each token corresponds to a terminal.</description>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.TopTreebankNode</name>
+ <description>A Penn Treebank Node; as the top node, this stores the whole subsumed sentence's parse tree as a string. It also stores all the terminals, allowing for traversal of the tree bottom-up (top-down is implied through the TreebankNode's 'children' attribute).</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.TreebankNode</supertypeName>
+ <features>
+ <featureDescription>
+ <name>treebankParse</name>
+ <description>A bracketed sentence string representing the parse tree.</description>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>terminals</name>
+ <description>Stores the terminal nodes of the parse tree. This allows for bottom-up traversal of a tree.</description>
+ <rangeTypeName>uima.cas.FSArray</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.syntax.TerminalTreebankNode</elementType>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.TreebankNode</name>
+ <description>A Penn Treebank-style tree node. Conforms to PTB 2.0 guidelines.</description>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>nodeType</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>nodeValue</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>leaf</name>
+ <description/>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>parent</name>
+ <description/>
+ <rangeTypeName>org.apache.ctakes.typesystem.type.syntax.TreebankNode</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>children</name>
+ <description/>
+ <rangeTypeName>uima.cas.FSArray</rangeTypeName>
+ <elementType>org.apache.ctakes.typesystem.type.syntax.TreebankNode</elementType>
+ </featureDescription>
+ <featureDescription>
+ <name>nodeTags</name>
+ <description/>
+ <rangeTypeName>uima.cas.StringArray</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>headIndex</name>
+ <description>The head index tracks the index into the word tokens which is the syntactic head of a phrase.</description>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.UCP</name>
+ <description>An unlike coordinating phrase, e.g., a NP and a PP conjoined via "and"
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.UCP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.VP</name>
+ <description>A verb phrase
+Equivalent to cTAKES: edu.mayo.bmi.uima.chunker.type.VP</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.Chunk</supertypeName>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.syntax.WordToken</name>
+ <description>Differentiates a token as being a word rather than a punctuation, symbol, newline, contraction, or number.
+Equivalent to cTAKES: org.apache.ctakes.typesystem.type.WordToken</description>
+ <supertypeName>org.apache.ctakes.typesystem.type.syntax.BaseToken</supertypeName>
+ <features>
+ <featureDescription>
+ <name>capitalization</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>numPosition</name>
+ <description/>
+ <rangeTypeName>uima.cas.Integer</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>suggestion</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>canonicalForm</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ <typeDescription>
+ <name>org.apache.ctakes.typesystem.type.textsem.ContextAnnotation</name>
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