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Posted to commits@uima.apache.org by re...@apache.org on 2020/10/17 17:59:19 UTC
[uima-uimaj] 01/01: Merge branch 'master' into
NO-JIRA-Fix-build-on-Windows-nodes-master
This is an automated email from the ASF dual-hosted git repository.
rec pushed a commit to branch NO-JIRA-Fix-build-on-Windows-nodes-master
in repository https://gitbox.apache.org/repos/asf/uima-uimaj.git
commit 978e5253a2e413f3da16fdd6af9018fb65a90dfc
Merge: 947e9b6 99d272e
Author: Richard Eckart de Castilho <re...@apache.org>
AuthorDate: Sat Oct 17 19:59:38 2020 +0200
Merge branch 'master' into NO-JIRA-Fix-build-on-Windows-nodes-master
* master: (2083 commits)
[UIMA-6272] UIMA doesn't build on Java 14
[UIMA-3484] Fix JavaDoc issues
[UIMA-3484] Fix JavaDoc issues
[UIMA-3484] Fix JavaDoc issues
[UIMA-3484] Fix JavaDoc issues
[UIMA-6269] select.coveredBy with includeAnnotationsWithEndBeyondBounds has broken edge case
[UIMA-6269] select.coveredBy with includeAnnotationsWithEndBeyondBounds has broken edge case
[UIMA-6243] JCas returns Annotation when asked for a specific subtype
No jira: Revert switch building using Java 11 to building using Java 8. Eclipse bundles that are resolved during the build require Java 11.
[UIMA-6259] Jenkinsfile for UIMA Java SDK
[UIMA-6259] Jenkinsfile for UIMA Java SDK
[UIMA-6249] avoid sync in getJCasRegisteredType
Fix CVD makeNodes to used array length
[UIMA-6244] change special xml chars to ones that are valid with windows
UIMA-6199 add comment
UIMA-6199 add comments describing meaning of length
make forAllViews public so it can be accessed from another internl pkg
UIMA-6199 2 part fix for edge case of non-indexed doc_annot
[UIMA-6199] Unindexed document annotation added back to index during deserialization
[UIMA-6199] Unindexed document annotation added back to index during deserialization
...
.asf.yaml | 19 +
PearPackagingMavenPlugin/pom.xml | 11 +-
README | 105 +-
RELEASE_NOTES.html | 40 +-
aggregate-uimaj-docbooks/pom.xml | 10 +-
aggregate-uimaj-eclipse-plugins/pom.xml | 9 +-
aggregate-uimaj/pom.xml | 10 +-
jVinci/pom.xml | 9 +-
.../vinci/transport/document/XMLToXTalk.java | 9 +-
.../transport/util/TransportableConverter.java | 13 +-
.../vinci/transport/vns/service/Service.java | 10 +-
.../transport/vns/service/ServiceRegistry.java | 6 +-
.../apache/vinci/transport/vns/service/VNS.java | 15 +-
jcasgen-maven-plugin/pom.xml | 221 +-
jcasgen-maven-plugin/src/it/classpath/pom.xml | 8 +-
jcasgen-maven-plugin/src/it/m2e/pom.xml | 6 +-
.../src/it/m2e/projects/jcasgen/classpath/pom.xml | 4 +-
.../src/it/m2e/projects/jcasgen/crossref1/pom.xml | 4 +-
.../src/it/m2e/projects/jcasgen/crossref2/pom.xml | 2 +-
.../src/it/m2e/projects/jcasgen/simple/pom.xml | 2 +-
.../src/it/multimodule/crossref1/pom.xml | 5 +-
.../src/it/multimodule/crossref2/pom.xml | 5 +-
jcasgen-maven-plugin/src/it/multimodule/pom.xml | 1 +
jcasgen-maven-plugin/src/it/simple/pom.xml | 5 +-
.../uima/tools/jcasgen/maven/JCasGenMojo.java | 2 +-
.../uima/tools/jcasgen/maven/JCasGenMojoTest.java | 8 +-
pom.xml | 87 +-
src/main/analysis-of-API-changes.xlsx | Bin 0 -> 18906 bytes
src/main/assembly/bin-without-jackson.xml | 51 +-
src/main/assembly/bin.xml | 50 +-
src/main/bin_distr_license_notices/LICENSE | 263 +
src/main/bin_distr_license_notices/NOTICE | 35 +
.../NOTICE-without-jackson | 14 +
src/main/license_notice_research.txt | 39 +
src/main/readme/LICENSE | 237 -
src/main/readme/NOTICE | 33 -
src/main/readme/NOTICE-without-jackson | 12 -
src/main/scripts/ibmUimaToApacheUima.bat | 32 -
src/main/scripts/ibmUimaToApacheUima.sh | 32 -
src/main/scripts/runUimaClass.bat | 2 +-
src/main/scripts/runUimaClass.sh | 4 +-
src/main/scripts/runV3migrateJCas.bat | 29 +
src/main/scripts/runV3migrateJCas.sh | 26 +
src/main/scripts/setUimaClassPath.bat | 4 +
src/main/scripts/setUimaClassPath.sh | 2 +
uima-docbook-overview-and-setup/pom.xml | 9 +-
.../src/docbook/conceptual_overview.xml | 18 +-
.../src/docbook/eclipse_setup.xml | 33 +-
.../src/docbook/faqs.xml | 97 +-
.../src/docbook/glossary.xml | 42 +-
.../src/docbook/project_overview.xml | 468 +-
uima-docbook-references/pom.xml | 9 +-
uima-docbook-references/src/docbook/ref.cas.xml | 189 +-
uima-docbook-references/src/docbook/ref.config.xml | 57 +-
.../src/docbook/ref.javadocs.xml | 2 +-
uima-docbook-references/src/docbook/ref.jcas.xml | 40 +-
.../src/docbook/ref.xml.component_descriptor.xml | 7 +-
uima-docbook-tools/pom.xml | 9 +-
uima-docbook-tutorials-and-users-guides/pom.xml | 9 +-
.../docbook/annotator_analysis_engine_guide.xml | 317 +-
.../src/docbook/tug.application.xml | 153 +-
.../src/docbook/tug.multi_views.xml | 43 +-
uima-docbook-v3-users-guide/pom.xml | 62 +
.../custom_java_objects/5_steps.png | Bin 0 -> 64814 bytes
.../version_3_users_guide/migrate/multiples.png | Bin 0 -> 26915 bytes
.../select/select_big_pic.png | Bin 0 -> 19046 bytes
.../select/select_processing_actions.png | Bin 0 -> 45915 bytes
.../select/select_selection_and_ordering.png | Bin 0 -> 63212 bytes
.../select/select_source_type.png | Bin 0 -> 78674 bytes
.../select/select_terminal_form_actions.png | Bin 0 -> 47533 bytes
.../src/docbook/uv3.backwards_compatibility.xml | 418 ++
.../src/docbook/uv3.custom_java_objects.xml | 300 +
.../src/docbook/uv3.logging.xml | 308 +
.../src/docbook/uv3.migration.aids.xml | 215 +
.../src/docbook/uv3.migration.xml | 674 ++
.../src/docbook/uv3.new_extended_apis.xml | 405 ++
.../src/docbook/uv3.overview.xml | 336 +
.../src/docbook/uv3.pears.xml | 118 +
.../src/docbook/uv3.performance.xml | 89 +
.../src/docbook/uv3.select.xml | 904 +++
.../src/docbook/version_3_users_guide.xml | 39 +
.../src/image-source/source.pptx | Bin 0 -> 74273 bytes
uimaj-adapter-soap/pom.xml | 9 +-
.../soap/AxisAnalysisEngineServiceStub.java | 23 +-
.../soap/AxisAnalysisEngineService_impl.java | 19 +-
.../adapter/soap/AxisResourceServiceManager.java | 13 +-
.../uima/adapter/soap/AxisResourceServiceStub.java | 6 +
.../uima/adapter/soap/BinaryDeserializer.java | 35 +-
.../adapter/soap/BinaryDeserializerFactory.java | 11 +
.../apache/uima/adapter/soap/BinarySerializer.java | 41 +-
.../uima/adapter/soap/BinarySerializerFactory.java | 19 +
.../soap/SoapAnalysisEngineServiceAdapter.java | 8 +
.../apache/uima/adapter/soap/XmlDeserializer.java | 54 +-
.../uima/adapter/soap/XmlDeserializerFactory.java | 11 +
.../apache/uima/adapter/soap/XmlSerializer.java | 58 +-
.../uima/adapter/soap/XmlSerializerFactory.java | 11 +
.../soap/axis11/BinaryDeserializer_Axis11.java | 34 +-
.../soap/axis11/BinarySerializer_Axis11.java | 41 +-
.../soap/axis11/XmlDeserializer_Axis11.java | 53 +-
.../adapter/soap/axis11/XmlSerializer_Axis11.java | 57 +-
uimaj-adapter-vinci/pom.xml | 16 +-
.../uima/adapter/vinci/CASTransportable.java | 89 +-
.../vinci/VinciAnalysisEngineServiceAdapter.java | 7 +
.../vinci/VinciAnalysisEngineServiceStub.java | 82 +-
.../vinci/VinciAnalysisEngineService_impl.java | 79 +-
.../VinciBinaryAnalysisEngineServiceStub.java | 50 +-
.../VinciBinaryAnalysisEngineService_impl.java | 74 +-
.../apache/uima/adapter/vinci/util/Constants.java | 25 +-
.../apache/uima/adapter/vinci/util/Descriptor.java | 72 +
.../uima/adapter/vinci/util/NetworkUtil.java | 1 +
.../adapter/vinci/util/SaxVinciFrameBuilder.java | 33 +-
.../apache/uima/adapter/vinci/util/Shutdown.java | 9 +
.../vinci/util/UimaSaxVinciFrameBuilder.java | 18 +-
.../uima/adapter/vinci/util/VinciSaxParser.java | 26 +
.../uima/adapter/vinci/util/VinciTAEClient.java | 9 +
.../VinciAnalysisEngineServiceAdapterTest.java | 13 +-
uimaj-bootstrap/pom.xml | 9 +-
.../org/apache/uima/bootstrap/UimaBootstrap.java | 2 +-
uimaj-component-test-util/pom.xml | 9 +-
.../test/junit_extension/AnnotationWriter.java | 53 +-
.../AnnotatorPerformanceTester.java | 36 +-
.../uima/test/junit_extension/AnnotatorTester.java | 53 +-
.../junit_extension/PerformanceTestResult.java | 39 +-
.../junit_extension/PerformanceTestResultImpl.java | 126 +-
uimaj-core/pom.xml | 224 +-
.../main/java/org/apache/uima/I18nExceptionI.java | 107 +
.../apache/uima/InternationalizedException.java | 17 +-
.../uima/InternationalizedRuntimeException.java | 3 +-
.../main/java/org/apache/uima/List_of_ints.java | 407 ++
.../main/java/org/apache/uima/UIMAException.java | 123 +-
.../main/java/org/apache/uima/UIMAFramework.java | 44 +-
.../java/org/apache/uima/UIMARuntimeException.java | 195 +-
.../apache/uima/UIMA_IllegalArgumentException.java | 4 +-
.../apache/uima/UIMA_IllegalStateException.java | 10 +-
.../uima/UIMA_UnsupportedOperationException.java | 2 +-
.../java/org/apache/uima/UimaContextHolder.java | 6 +-
.../java/org/apache/uima/UimaSerializable.java | 50 +
.../java/org/apache/uima/UimaSerializableFSs.java | 40 +
.../AnalysisComponent_ImplBase.java | 11 +-
.../analysis_component/CasAnnotator_ImplBase.java | 4 +-
.../analysis_component/CasMultiplier_ImplBase.java | 4 +-
.../uima/analysis_engine/AnalysisEngine.java | 21 +
.../uima/analysis_engine/asb/impl/ASB_impl.java | 24 +-
.../asb/impl/FlowControllerContainer.java | 39 +-
.../impl/AggregateAnalysisEngine_impl.java | 18 +-
.../impl/AnalysisEngineDescription_impl.java | 30 +-
.../impl/AnalysisEngineImplBase.java | 110 +-
.../impl/AnalysisEngineManagementImpl.java | 5 +-
.../impl/MultiThreadCoordination.java | 1880 -----
.../impl/MultiprocessingAnalysisEngine_impl.java | 10 +-
.../impl/PearAnalysisEngineWrapper.java | 33 +-
.../impl/PrimitiveAnalysisEngine_impl.java | 85 +-
.../impl/ResultSpecification_impl.java | 10 +-
.../apache/uima/analysis_engine/impl/RsFeats.java | 4 +-
.../uima/analysis_engine/impl/RsFullFeatNames.java | 6 +-
.../apache/uima/analysis_engine/impl/RsLang.java | 2 +-
.../apache/uima/analysis_engine/impl/RsLangs.java | 15 +-
.../apache/uima/analysis_engine/impl/RsType.java | 2 +-
.../uima/analysis_engine/impl/RsTypesMap.java | 4 +-
.../impl/UimacppAnalysisEngineImpl.java | 19 +-
.../impl/compatibility/AnnotatorAdapter.java | 4 +-
.../impl/compatibility/CasConsumerAdapter.java | 2 +-
.../compatibility/CollectionReaderAdapter.java | 2 +-
.../metadata/impl/CapabilityLanguageFlow_impl.java | 3 +-
.../metadata/impl/FixedFlow_impl.java | 3 +-
.../service/impl/AnalysisEngineService_impl.java | 13 +-
.../org/apache/uima/cas/AbstractCas_ImplBase.java | 1 +
.../java/org/apache/uima/cas/AnnotationBaseFS.java | 3 +-
.../src/main/java/org/apache/uima/cas/ArrayFS.java | 41 +-
.../java/org/apache/uima/cas/BooleanArrayFS.java | 8 +-
.../main/java/org/apache/uima/cas/ByteArrayFS.java | 7 +-
.../src/main/java/org/apache/uima/cas/CAS.java | 353 +-
.../java/org/apache/uima/cas/CASException.java | 18 +-
.../org/apache/uima/cas/CASRuntimeException.java | 164 +-
.../java/org/apache/uima/cas/CommonArrayFS.java | 42 +-
.../java/org/apache/uima/cas/DoubleArrayFS.java | 2 +-
.../java/org/apache/uima/cas/FSComparators.java | 32 +
.../src/main/java/org/apache/uima/cas/FSIndex.java | 155 +-
.../org/apache/uima/cas/FSIndexRepository.java | 93 +-
.../main/java/org/apache/uima/cas/FSIterator.java | 259 +-
.../main/java/org/apache/uima/cas/FeaturePath.java | 75 +-
.../java/org/apache/uima/cas/FeatureStructure.java | 134 +-
.../java/org/apache/uima/cas/FloatArrayFS.java | 10 +-
.../main/java/org/apache/uima/cas/IntArrayFS.java | 12 +-
.../main/java/org/apache/uima/cas/LongArrayFS.java | 10 +-
.../java/org/apache/uima/cas/ParsingException.java | 1 -
.../main/java/org/apache/uima/cas/SelectFSs.java | 818 +++
.../java/org/apache/uima/cas/ShortArrayFS.java | 7 +-
.../src/main/java/org/apache/uima/cas/SofaFS.java | 12 +-
.../java/org/apache/uima/cas/StringArrayFS.java | 80 +-
.../src/main/java/org/apache/uima/cas/Type.java | 27 +-
.../main/java/org/apache/uima/cas/TypeClass.java | 31 +-
.../main/java/org/apache/uima/cas/TypeSystem.java | 28 +-
.../apache/uima/cas/admin/CASAdminException.java | 167 +-
.../java/org/apache/uima/cas/admin/CASFactory.java | 24 +-
.../java/org/apache/uima/cas/admin/CASMgr.java | 5 +
.../apache/uima/cas/admin/FSIndexComparator.java | 12 +-
.../uima/cas/admin/FSIndexRepositoryMgr.java | 12 +-
.../org/apache/uima/cas/admin/LinearTypeOrder.java | 14 +
.../org/apache/uima/cas/admin/TypeSystemMgr.java | 45 +-
.../main/java/org/apache/uima/cas/impl/AllFSs.java | 190 +
.../apache/uima/cas/impl/AnnotationBaseImpl.java | 126 +-
.../org/apache/uima/cas/impl/AnnotationImpl.java | 136 +-
.../uima/cas/impl/AnnotationImplException.java | 4 +-
.../apache/uima/cas/impl/AnnotationIndexImpl.java | 198 -
.../uima/cas/impl/AnnotationTreeNodeImpl.java | 8 +-
.../org/apache/uima/cas/impl/ArrayFSGenerator.java | 36 -
.../java/org/apache/uima/cas/impl/ArrayFSImpl.java | 128 -
.../org/apache/uima/cas/impl/BinaryCasSerDes.java | 1989 ++++++
.../org/apache/uima/cas/impl/BinaryCasSerDes4.java | 3176 +++++----
.../org/apache/uima/cas/impl/BinaryCasSerDes6.java | 3707 +++++-----
.../apache/uima/cas/impl/BooleanArrayFSImpl.java | 146 +-
.../org/apache/uima/cas/impl/BuiltinTypeKinds.java | 195 +
.../org/apache/uima/cas/impl/ByteArrayFSImpl.java | 141 +-
.../java/org/apache/uima/cas/impl/ByteHeap.java | 205 +-
.../java/org/apache/uima/cas/impl/CASImpl.java | 7521 ++++++++++----------
.../java/org/apache/uima/cas/impl/CASMetadata.java | 170 -
.../org/apache/uima/cas/impl/CASMgrSerializer.java | 93 +-
.../org/apache/uima/cas/impl/CASSerializer.java | 898 ++-
.../java/org/apache/uima/cas/impl/CasCompare.java | 2168 ++++++
.../org/apache/uima/cas/impl/CasSeqAddrMaps.java | 137 +-
.../apache/uima/cas/impl/CasSerializerSupport.java | 662 +-
.../java/org/apache/uima/cas/impl/CasState.java | 29 +-
.../apache/uima/cas/impl/CasTypeSystemMapper.java | 359 +-
.../apache/uima/cas/impl/CommonArrayFSImpl.java | 78 +-
.../apache/uima/cas/impl/CommonAuxArrayFSImpl.java | 97 -
.../org/apache/uima/cas/impl/CommonAuxHeap.java | 402 +-
.../org/apache/uima/cas/impl/CommonSerDes.java | 18 +-
.../uima/cas/impl/CommonSerDesSequential.java | 211 +
.../uima/cas/impl/ConstraintFactoryImpl.java | 29 +-
.../apache/uima/cas/impl/CopyOnWriteIndexPart.java | 57 +
.../uima/cas/impl/DebugFSLogicalStructure.java | 49 +-
.../apache/uima/cas/impl/DebugNameValuePair.java | 9 +-
.../uima/cas/impl/DefaultAnnotationComparator.java | 91 -
.../cas/impl/DefaultFSAnnotationComparator.java | 59 -
.../apache/uima/cas/impl/DeferredIndexUpdates.java | 17 +-
.../apache/uima/cas/impl/DoubleArrayFSImpl.java | 144 +-
.../apache/uima/cas/impl/EmbeddedConstraint.java | 6 +-
.../java/org/apache/uima/cas/impl/FSBagIndex.java | 320 -
.../uima/cas/impl/FSBooleanConstraintImpl.java | 3 +
.../org/apache/uima/cas/impl/FSClassRegistry.java | 1588 ++++-
.../org/apache/uima/cas/impl/FSComparator.java | 4 +-
.../uima/cas/impl/FSFloatConstraintImpl.java | 29 +-
.../java/org/apache/uima/cas/impl/FSGenerator.java | 65 +-
.../org/apache/uima/cas/impl/FSImplComparator.java | 3 +-
.../uima/cas/impl/FSIndexComparatorImpl.java | 182 +-
.../java/org/apache/uima/cas/impl/FSIndexFlat.java | 708 --
.../java/org/apache/uima/cas/impl/FSIndexImpl.java | 42 -
.../uima/cas/impl/FSIndexRepositoryImpl.java | 4028 ++++-------
.../org/apache/uima/cas/impl/FSIntArrayIndex.java | 440 --
.../uima/cas/impl/FSIntIteratorImplBase.java | 137 -
.../apache/uima/cas/impl/FSIteratorAggregate.java | 187 -
.../apache/uima/cas/impl/FSIteratorImplBase.java | 206 +-
.../apache/uima/cas/impl/FSIteratorWrapper.java | 125 -
.../cas/impl/FSIteratorWrapperDoubleCheck.java | 156 -
.../org/apache/uima/cas/impl/FSLeafIndexImpl.java | 541 --
.../apache/uima/cas/impl/FSListIteratorImpl.java | 161 -
.../java/org/apache/uima/cas/impl/FSRBTIndex.java | 151 -
.../org/apache/uima/cas/impl/FSRBTSetIndex.java | 172 -
.../uima/cas/impl/FSStringConstraintImpl.java | 3 +
.../apache/uima/cas/impl/FSTypeConstraintImpl.java | 12 +-
.../org/apache/uima/cas/impl/FSsTobeAddedback.java | 181 +-
.../java/org/apache/uima/cas/impl/FeatureImpl.java | 290 +-
.../uima/cas/impl/FeatureImpl_jcas_only.java | 47 +
.../org/apache/uima/cas/impl/FeaturePathImpl.java | 1713 ++---
.../apache/uima/cas/impl/FeatureStructureImpl.java | 673 +-
.../uima/cas/impl/FeatureStructureImplC.java | 1818 ++++-
.../apache/uima/cas/impl/FeatureValuePathImpl.java | 101 +-
.../org/apache/uima/cas/impl/FilteredIterator.java | 91 +-
.../org/apache/uima/cas/impl/FloatArrayFSImpl.java | 159 +-
.../org/apache/uima/cas/impl/FloatConstraint.java | 2 +
.../org/apache/uima/cas/impl/FsGenerator3.java | 32 +
.../org/apache/uima/cas/impl/FsGeneratorArray.java | 33 +
.../apache/uima/cas/impl/FsIndex_annotation.java | 149 +
.../java/org/apache/uima/cas/impl/FsIndex_bag.java | 265 +
.../org/apache/uima/cas/impl/FsIndex_flat.java | 228 +
.../org/apache/uima/cas/impl/FsIndex_iicp.java | 628 ++
.../apache/uima/cas/impl/FsIndex_set_sorted.java | 281 +
.../apache/uima/cas/impl/FsIndex_singletype.java | 603 ++
.../org/apache/uima/cas/impl/FsIndex_snapshot.java | 158 +
.../cas/impl/FsIterator_aggregation_common.java | 294 +
.../apache/uima/cas/impl/FsIterator_backwards.java | 148 +
.../org/apache/uima/cas/impl/FsIterator_bag.java | 195 +
.../apache/uima/cas/impl/FsIterator_bag_pear.java | 49 +
.../apache/uima/cas/impl/FsIterator_limited.java | 144 +
.../uima/cas/impl/FsIterator_multiple_indexes.java | 204 +
.../uima/cas/impl/FsIterator_set_sorted2.java | 328 +
.../uima/cas/impl/FsIterator_set_sorted_pear.java | 49 +
.../uima/cas/impl/FsIterator_singletype.java | 100 +
.../uima/cas/impl/FsIterator_subtypes_ordered.java | 515 ++
.../cas/impl/FsIterator_subtypes_snapshot.java | 268 +
.../main/java/org/apache/uima/cas/impl/Heap.java | 619 +-
.../main/java/org/apache/uima/cas/impl/Id2FS.java | 341 +
.../org/apache/uima/cas/impl/IntArrayFSImpl.java | 153 +-
.../org/apache/uima/cas/impl/IntIterator4bag.java | 108 -
.../org/apache/uima/cas/impl/IntIterator4set.java | 126 -
.../apache/uima/cas/impl/IntIterator4sorted.java | 180 -
.../uima/cas/impl/LLUnambiguousIteratorImpl.java | 161 +-
.../uima/cas/impl/LinearTypeOrderBuilderImpl.java | 208 +-
.../java/org/apache/uima/cas/impl/ListUtils.java | 561 --
.../org/apache/uima/cas/impl/LongArrayFSImpl.java | 187 +-
.../java/org/apache/uima/cas/impl/LongHeap.java | 202 +-
.../java/org/apache/uima/cas/impl/LongSet.java | 76 +
.../java/org/apache/uima/cas/impl/LowLevelCAS.java | 67 +-
.../apache/uima/cas/impl/LowLevelException.java | 121 +-
.../org/apache/uima/cas/impl/LowLevelIndex.java | 182 +-
.../uima/cas/impl/LowLevelIndexRepository.java | 8 +-
.../org/apache/uima/cas/impl/LowLevelIterator.java | 171 +-
.../uima/cas/impl/LowLevelIteratorAggregate.java | 180 -
.../uima/cas/impl/LowLevelIterator_empty.java | 68 +
.../apache/uima/cas/impl/LowLevelTypeSystem.java | 2 +-
.../java/org/apache/uima/cas/impl/MarkerImpl.java | 72 +-
.../apache/uima/cas/impl/MethodHandlesLookup.java | 32 +
.../apache/uima/cas/impl/OutOfTypeSystemData.java | 56 +-
.../org/apache/uima/cas/impl/PathConstraint.java | 1 +
.../org/apache/uima/cas/impl/SelectFSs_impl.java | 1626 +++++
.../org/apache/uima/cas/impl/Serialization.java | 6 +-
.../org/apache/uima/cas/impl/ShortArrayFSImpl.java | 140 +-
.../java/org/apache/uima/cas/impl/ShortHeap.java | 196 +-
.../java/org/apache/uima/cas/impl/SlotKinds.java | 18 +
.../apache/uima/cas/impl/SlotKindsConstants.java | 70 +
.../java/org/apache/uima/cas/impl/SofaFSImpl.java | 263 +-
.../apache/uima/cas/impl/StringArrayFSImpl.java | 153 +-
.../java/org/apache/uima/cas/impl/StringHeap.java | 24 +-
.../java/org/apache/uima/cas/impl/StringSet.java | 77 +
.../org/apache/uima/cas/impl/StringTypeImpl.java | 40 -
.../java/org/apache/uima/cas/impl/Subiterator.java | 1420 ++--
.../java/org/apache/uima/cas/impl/TypeImpl.java | 1121 ++-
.../org/apache/uima/cas/impl/TypeImpl_annot.java | 37 +
.../apache/uima/cas/impl/TypeImpl_annotBase.java | 37 +
.../org/apache/uima/cas/impl/TypeImpl_array.java | 157 +
.../org/apache/uima/cas/impl/TypeImpl_list.java | 37 +
.../apache/uima/cas/impl/TypeImpl_primitive.java | 38 +
.../org/apache/uima/cas/impl/TypeImpl_string.java | 48 +
.../uima/cas/impl/TypeImpl_stringSubtype.java | 51 +
.../org/apache/uima/cas/impl/TypeSystem2Xml.java | 18 +-
.../apache/uima/cas/impl/TypeSystemConstants.java | 113 +
.../org/apache/uima/cas/impl/TypeSystemImpl.java | 3712 ++++++----
.../org/apache/uima/cas/impl/TypeSystemUtils.java | 121 +-
.../org/apache/uima/cas/impl/UimaDecompiler.java | 345 +
.../org/apache/uima/cas/impl/XCASDeserializer.java | 683 +-
.../apache/uima/cas/impl/XCASParsingException.java | 17 +-
.../org/apache/uima/cas/impl/XCASSerializer.java | 452 +-
.../apache/uima/cas/impl/XmiCasDeserializer.java | 1708 +++--
.../org/apache/uima/cas/impl/XmiCasSerializer.java | 308 +-
.../uima/cas/impl/XmiSerializationSharedData.java | 344 +-
.../java/org/apache/uima/cas/impl/package.html | 115 +-
.../src/main/java/org/apache/uima/cas/package.html | 129 +-
.../org/apache/uima/cas/text/AnnotationFS.java | 36 +
.../org/apache/uima/cas/text/AnnotationIndex.java | 12 +-
.../org/apache/uima/cas_data/impl/CasDataImpl.java | 2 +-
.../apache/uima/cas_data/impl/CasDataUtils.java | 2 +-
.../uima/cas_data/impl/FeatureStructureImpl.java | 7 +-
.../uima/cas_data/impl/PrimitiveValueImpl.java | 8 +-
.../cas_data/impl/XCasToCasDataSaxHandler.java | 5 +-
.../impl/CasConsumerDescription_impl.java | 4 +-
.../impl/CasInitializerDescription_impl.java | 9 +-
.../impl/CollectionReaderDescription_impl.java | 3 +-
.../uima/examples/SourceDocumentInformation.java | 320 +-
.../examples/SourceDocumentInformation_Type.java | 219 -
.../apache/uima/flow/FlowController_ImplBase.java | 9 +
.../impl/CapabilityLanguageFlowController.java | 16 +-
.../apache/uima/flow/impl/FixedFlowController.java | 4 +-
.../apache/uima/impl/CasConsumerFactory_impl.java | 2 +-
.../uima/impl/CasInitializerFactory_impl.java | 6 +-
.../apache/uima/impl/ChildUimaContext_impl.java | 12 +-
.../uima/impl/CompositeResourceFactory_impl.java | 2 +-
.../uima/impl/ResourceSpecifierFactory_impl.java | 1 +
.../org/apache/uima/impl/RootUimaContext_impl.java | 14 +-
.../org/apache/uima/impl/UIMAFramework_impl.java | 67 +-
.../org/apache/uima/impl/UimaContext_ImplBase.java | 87 +-
.../src/main/java/org/apache/uima/impl/Util.java | 48 +-
.../main/java/org/apache/uima/impl/package.html | 4 +-
.../uima/internal/util/AnalysisEnginePool.java | 12 +-
.../uima/internal/util/CharArraySpanMap.java | 2 +-
.../apache/uima/internal/util/CharacterUtils.java | 6 +-
.../org/apache/uima/internal/util/Class_TCCL.java | 15 +-
.../uima/internal/util/CommandLineParser.java | 10 +-
.../uima/internal/util/Common_hash_support.java | 546 ++
.../uima/internal/util/ComparableFSIterator.java | 39 +
.../util/ComparableIntPointerIterator.java | 47 -
.../uima/internal/util/CopyOnWriteObjHashSet.java | 197 +
.../util/CopyOnWriteOrderedFsSet_array.java | 150 +
.../org/apache/uima/internal/util/GraphNode.java | 4 +-
.../org/apache/uima/internal/util/I18nUtil.java | 42 +-
.../apache/uima/internal/util/Int2IntHashMap.java | 515 --
.../apache/uima/internal/util/Int2ObjHashMap.java | 610 ++
.../apache/uima/internal/util/Int2ObjListMap.java | 68 +
.../org/apache/uima/internal/util/IntBitSet.java | 27 +-
.../org/apache/uima/internal/util/IntHashSet.java | 907 ++-
.../apache/uima/internal/util/IntListIterator.java | 36 +-
.../java/org/apache/uima/internal/util/IntSet.java | 22 +-
.../org/apache/uima/internal/util/IntStack.java | 4 +-
.../org/apache/uima/internal/util/IntVector.java | 100 +-
.../java/org/apache/uima/internal/util/Misc.java | 1225 ++++
.../org/apache/uima/internal/util/MiscImpl.java | 101 -
.../internal/util/MsgLocalizationClassLoader.java | 170 +-
.../uima/internal/util/Obj2IntIdentityHashMap.java | 588 ++
.../org/apache/uima/internal/util/ObjHashSet.java | 694 ++
.../uima/internal/util/OrderedFsSet_array.java | 689 ++
.../uima/internal/util/OrderedFsSet_array2.java | 2141 ++++++
.../java/org/apache/uima/internal/util/Pair.java | 79 +
.../apache/uima/internal/util/PositiveIntSet.java | 20 +
.../uima/internal/util/PositiveIntSet_impl.java | 42 +-
.../apache/uima/internal/util/ResourcePool.java | 4 +-
.../uima/internal/util/SerializationUtils.java | 18 +-
.../apache/uima/internal/util/StringToIntMap.java | 8 +-
.../org/apache/uima/internal/util/StringUtils.java | 2 +-
.../org/apache/uima/internal/util/SymbolTable.java | 8 +-
.../apache/uima/internal/util/SystemEnvReader.java | 13 +-
.../uima/internal/util/TextStringTokenizer.java | 10 +-
.../apache/uima/internal/util/TextTokenizer.java | 10 +-
.../apache/uima/internal/util/UIMAClassLoader.java | 50 +-
.../org/apache/uima/internal/util/Utilities.java | 2 +
.../apache/uima/internal/util/XmlAttribute.java | 4 +-
.../internal/util/XmlElementNameAndContents.java | 6 +-
.../uima/internal/util/function/Consumer2.java | 24 +
.../function/Consumer_T_int_withIOException.java | 26 +
.../util/function/Consumer_T_withIOException.java | 26 +
.../util/function/Consumer_withSaxException.java | 26 +
.../internal/util/function/DeserBinaryIndexes.java | 26 +
.../util/function/IntConsumer_withIOException.java | 26 +
.../util/function/Runnable_withException.java | 24 +
.../util/function/Runnable_withSaxException.java | 26 +
.../uima/internal/util/function/package-info.java | 24 +
.../uima/internal/util/rb_trees/Int2IntRBT.java | 39 +-
.../uima/internal/util/rb_trees/IntArrayRBT.java | 41 +-
.../internal/util/rb_trees/IntArrayRBTcommon.java | 15 +-
.../uima/internal/util/rb_trees/IntRBTNode.java | 2 +-
.../internal/util/rb_trees/IntRedBlackTree.java | 3 +-
.../uima/internal/util/rb_trees/RedBlackTree.java | 6 +-
.../src/main/java/org/apache/uima/jcas/JCas.java | 445 +-
.../java/org/apache/uima/jcas/JCasRegistry.java | 94 +-
.../org/apache/uima/jcas/JFSIndexRepository.java | 3 +-
.../org/apache/uima/jcas/cas/AnnotationBase.java | 93 +-
.../apache/uima/jcas/cas/AnnotationBase_Type.java | 170 +-
.../java/org/apache/uima/jcas/cas/ArrayFSImpl.java | 32 +
.../org/apache/uima/jcas/cas/BooleanArray.java | 139 +-
.../apache/uima/jcas/cas/BooleanArray_Type.java | 150 -
.../java/org/apache/uima/jcas/cas/ByteArray.java | 148 +-
.../org/apache/uima/jcas/cas/ByteArray_Type.java | 149 -
.../org/apache/uima/jcas/cas/CommonArray_Type.java | 53 -
.../java/org/apache/uima/jcas/cas/CommonList.java | 318 +
.../apache/uima/jcas/cas/CommonPrimitiveArray.java | 40 +
.../java/org/apache/uima/jcas/cas/DoubleArray.java | 189 +-
.../org/apache/uima/jcas/cas/DoubleArray_Type.java | 145 -
.../java/org/apache/uima/jcas/cas/EmptyFSList.java | 30 +-
.../org/apache/uima/jcas/cas/EmptyFSList_Type.java | 63 -
.../org/apache/uima/jcas/cas/EmptyFloatList.java | 26 +-
.../apache/uima/jcas/cas/EmptyFloatList_Type.java | 65 -
.../org/apache/uima/jcas/cas/EmptyIntegerList.java | 27 +-
.../uima/jcas/cas/EmptyIntegerList_Type.java | 65 -
.../java/org/apache/uima/jcas/cas/EmptyList.java | 27 +
.../org/apache/uima/jcas/cas/EmptyStringList.java | 28 +-
.../apache/uima/jcas/cas/EmptyStringList_Type.java | 63 -
.../java/org/apache/uima/jcas/cas/FSArray.java | 287 +-
.../java/org/apache/uima/jcas/cas/FSArrayList.java | 1116 +++
.../org/apache/uima/jcas/cas/FSArray_Type.java | 167 -
.../java/org/apache/uima/jcas/cas/FSHashSet.java | 554 ++
.../org/apache/uima/jcas/cas/FSLinkedHashSet.java | 111 +
.../main/java/org/apache/uima/jcas/cas/FSList.java | 193 +-
.../java/org/apache/uima/jcas/cas/FSList_Type.java | 64 -
.../java/org/apache/uima/jcas/cas/FloatArray.java | 182 +-
.../org/apache/uima/jcas/cas/FloatArray_Type.java | 151 -
.../java/org/apache/uima/jcas/cas/FloatList.java | 122 +-
.../org/apache/uima/jcas/cas/FloatList_Type.java | 64 -
.../main/java/org/apache/uima/jcas/cas/Int2FS.java | 361 +
.../org/apache/uima/jcas/cas/IntegerArray.java | 222 +-
.../org/apache/uima/jcas/cas/IntegerArrayList.java | 568 ++
.../apache/uima/jcas/cas/IntegerArray_Type.java | 156 -
.../java/org/apache/uima/jcas/cas/IntegerList.java | 144 +-
.../org/apache/uima/jcas/cas/IntegerList_Type.java | 64 -
.../java/org/apache/uima/jcas/cas/LongArray.java | 197 +-
.../org/apache/uima/jcas/cas/LongArray_Type.java | 152 -
.../org/apache/uima/jcas/cas/NonEmptyFSList.java | 150 +-
.../apache/uima/jcas/cas/NonEmptyFSList_Type.java | 108 -
.../apache/uima/jcas/cas/NonEmptyFloatList.java | 132 +-
.../uima/jcas/cas/NonEmptyFloatList_Type.java | 107 -
.../apache/uima/jcas/cas/NonEmptyIntegerList.java | 147 +-
.../uima/jcas/cas/NonEmptyIntegerList_Type.java | 107 -
.../org/apache/uima/jcas/cas/NonEmptyList.java | 25 +
.../apache/uima/jcas/cas/NonEmptyStringList.java | 138 +-
.../uima/jcas/cas/NonEmptyStringList_Type.java | 108 -
.../apache/uima/jcas/cas/SelectViaCopyToArray.java | 90 +
.../java/org/apache/uima/jcas/cas/ShortArray.java | 145 +-
.../org/apache/uima/jcas/cas/ShortArray_Type.java | 153 -
.../main/java/org/apache/uima/jcas/cas/Sofa.java | 384 +-
.../java/org/apache/uima/jcas/cas/Sofa_Type.java | 108 -
.../java/org/apache/uima/jcas/cas/StringArray.java | 145 +-
.../org/apache/uima/jcas/cas/StringArray_Type.java | 155 -
.../java/org/apache/uima/jcas/cas/StringList.java | 118 +-
.../org/apache/uima/jcas/cas/StringList_Type.java | 64 -
.../main/java/org/apache/uima/jcas/cas/TOP.java | 175 +-
.../java/org/apache/uima/jcas/cas/TOP_Type.java | 422 +-
.../org/apache/uima/jcas/impl/JCasHashMap.java | 261 +-
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 706 +-
.../java/org/apache/uima/jcas/impl/JCasImpl.java | 1374 +---
.../uima/jcas/impl/JFSIndexRepositoryImpl.java | 1 -
.../java/org/apache/uima/jcas/impl/package.html | 4 +-
.../java/org/apache/uima/jcas/tcas/Annotation.java | 225 +-
.../org/apache/uima/jcas/tcas/Annotation_Type.java | 263 +-
.../java/org/apache/uima/jcas/tcas/package.html | 24 -
.../src/main/java/org/apache/uima/package.html | 25 +-
.../uima/pear/tools/InstallationController.java | 78 +-
.../uima/pear/tools/InstallationDescriptor.java | 23 +-
.../pear/tools/InstallationDescriptorHandler.java | 18 +-
.../uima/pear/tools/InstallationProcessor.java | 18 +-
.../uima/pear/tools/LocalInstallationAgent.java | 54 +-
.../org/apache/uima/pear/tools/PackageBrowser.java | 13 +-
.../java/org/apache/uima/pear/util/FileUtil.java | 233 +-
.../org/apache/uima/pear/util/MessageRouter.java | 4 +-
.../org/apache/uima/pear/util/ProcessUtil.java | 2 +-
.../java/org/apache/uima/pear/util/UIMAUtil.java | 2 +-
.../java/org/apache/uima/pear/util/XMLUtil.java | 15 +-
.../org/apache/uima/resource/CasDefinition.java | 23 +-
.../java/org/apache/uima/resource/Resource.java | 2 +-
.../org/apache/uima/resource/ResourceManager.java | 20 +-
.../apache/uima/resource/Resource_ImplBase.java | 58 +-
.../apache/uima/resource/impl/CasManager_impl.java | 13 +-
.../impl/ConfigurableDataResource_impl.java | 19 +-
.../impl/ConfigurationManagerImplBase.java | 10 +-
.../resource/impl/ConfigurationManager_impl.java | 2 +-
.../resource/impl/FileLanguageResource_impl.java | 4 +-
.../resource/impl/FileResourceSpecifier_impl.java | 2 -
.../resource/impl/RelativePathResolver_impl.java | 16 +-
.../impl/ResourceCreationSpecifier_impl.java | 14 +-
.../uima/resource/impl/ResourceManager_impl.java | 69 +-
.../apache/uima/resource/impl/Session_impl.java | 2 +-
.../resource/metadata/ExternalResourceBinding.java | 4 +-
.../resource/metadata/impl/Capability_impl.java | 41 +-
.../metadata/impl/ConfigurationGroup_impl.java | 5 +-
.../ConfigurationParameterDeclarations_impl.java | 15 +-
.../impl/ConfigurationParameterSettings_impl.java | 10 +-
.../metadata/impl/ConfigurationParameter_impl.java | 7 +-
.../metadata/impl/FsIndexCollection_impl.java | 16 +-
.../metadata/impl/FsIndexDescription_impl.java | 4 +-
.../impl/MetaDataObjectSerializer_plain.java | 1 -
.../metadata/impl/MetaDataObject_impl.java | 16 +-
.../impl/ResourceManagerConfiguration_impl.java | 16 +-
.../metadata/impl/TypeDescription_impl.java | 8 +-
.../metadata/impl/TypePriorities_impl.java | 14 +-
.../metadata/impl/TypePriorityList_impl.java | 2 +-
.../metadata/impl/TypeSystemDescription_impl.java | 14 +-
.../org/apache/uima/uimacpp/CppUimajEngine.java | 9 +-
.../uima/uimacpp/UimacppAnalysisComponent.java | 2 +-
.../util/AnalysisEnginePerformanceReports.java | 2 +-
.../org/apache/uima/util/AnalysisEngineUtils.java | 2 +-
.../apache/uima/util/AutoCloseableNoException.java | 33 +
.../main/java/org/apache/uima/util/CasCopier.java | 1025 +--
.../org/apache/uima/util/CasCreationUtils.java | 156 +-
.../main/java/org/apache/uima/util/CasIOUtils.java | 29 +-
.../java/org/apache/uima/util/CasLoadMode.java | 2 +-
.../main/java/org/apache/uima/util/CasPool.java | 10 +-
.../java/org/apache/uima/util/CasToInlineXml.java | 5 +-
.../org/apache/uima/util/ConsumerCasUtils.java | 3 +-
.../main/java/org/apache/uima/util/FileUtils.java | 79 +-
.../main/java/org/apache/uima/util/IntEntry.java | 85 +
.../java/org/apache/uima/util/IteratorNvc.java | 34 +
.../main/java/org/apache/uima/util/JCasPool.java | 6 +-
.../src/main/java/org/apache/uima/util/Level.java | 15 +-
.../src/main/java/org/apache/uima/util/Logger.java | 247 +-
.../java/org/apache/uima/util/MessageReport.java | 1 +
.../src/main/java/org/apache/uima/util/Misc.java | 2 +-
.../apache/uima/util/SimpleResourceFactory.java | 10 +-
.../java/org/apache/uima/util/TCasToInlineXml.java | 11 +-
.../java/org/apache/uima/util/TypeSystemUtil.java | 5 +-
.../java/org/apache/uima/util/XMLSerializer.java | 16 +-
.../org/apache/uima/util/XmlCasDeserializer.java | 10 +-
.../org/apache/uima/util/XmlCasSerializer.java | 6 +-
.../uima/util/impl/CasPoolManagementImpl.java | 2 +-
.../java/org/apache/uima/util/impl/Constants.java | 42 +
.../java/org/apache/uima/util/impl/DataIO.java | 8 +-
.../apache/uima/util/impl/JSR47Logger_impl.java | 566 +-
.../apache/uima/util/impl/Log4jLogger_impl.java | 637 +-
.../apache/uima/util/impl/Logger_common_impl.java | 1200 ++++
.../org/apache/uima/util/impl/Logger_impl.java | 313 +-
.../org/apache/uima/util/impl/OptimizeStrings.java | 22 +-
.../uima/util/impl/ProcessTraceEvent_impl.java | 2 +-
.../apache/uima/util/impl/ProcessTrace_impl.java | 12 +-
.../org/apache/uima/util/impl/Settings_impl.java | 11 +-
.../apache/uima/util/impl/Slf4jLogger_impl.java | 410 ++
.../org/apache/uima/util/impl/XMLParser_impl.java | 2 +-
.../apache/uima/UIMAException_Messages.properties | 58 +-
.../apache/uima/cas/admin/admin_errors.properties | 13 +
.../uima/cas/impl/ll_runtimeException.properties | 3 +-
.../org/apache/uima/cas/impl/xcas.properties | 4 +-
.../org/apache/uima/impl/factoryConfig.xml | 3 +-
.../resources/org/apache/uima/semibuiltins.xml | 101 +
uimaj-core/src/test/java/aa/AbstractType.java | 149 +-
uimaj-core/src/test/java/aa/AbstractType_Type.java | 104 -
uimaj-core/src/test/java/aa/ConcreteType.java | 152 +-
uimaj-core/src/test/java/aa/ConcreteType_Type.java | 103 -
.../src/test/java/aa/MissingFeatureInCas.java | 240 +-
.../src/test/java/aa/MissingFeatureInCas_Type.java | 154 -
uimaj-core/src/test/java/aa/MissingInCas.java | 114 +-
uimaj-core/src/test/java/aa/MissingInCas_Type.java | 77 -
uimaj-core/src/test/java/aa/Root.java | 293 +-
uimaj-core/src/test/java/aa/Root_Type.java | 557 --
uimaj-core/src/test/java/aa/T.java | 118 +
.../test/java/org/apache/lang/LanguagePair.java | 226 +-
.../java/org/apache/lang/LanguagePair_Type.java | 135 -
.../uima/ae/multiplier/SimpleCasGenerator.java | 4 +-
.../org/apache/uima/ae/noop/NoOpAnnotator.java | 9 +-
.../impl/AnalysisEngineDescription_implTest.java | 32 +-
.../impl/AnalysisEngineManagementImplTest.java | 7 +-
.../impl/AnalysisEngine_implTest.java | 448 +-
.../analysis_engine/impl/AnnotationWriter.java | 7 +-
.../impl/AnnotatorContext_implTest.java | 14 +-
.../uima/analysis_engine/impl/ErrorAnnotator.java | 9 +
.../impl/FlowControllerForErrorTest.java | 6 +-
.../analysis_engine/impl/MultiViewAnnotator.java | 1 -
.../MultiprocessingAnalysisEngine_implTest.java | 44 +-
.../impl/PearAnalysisEngineWrapperTest.java | 3 +-
.../uima/analysis_engine/impl/ResultSpecTest.java | 24 +-
.../impl/ResultSpecWithTypeSystemTest.java | 27 +-
.../impl/ResultSpecification_implTest.java | 8 +-
.../impl/TaeDescription_implTest.java | 6 +-
.../uima/analysis_engine/impl/TestAnnotator2.java | 18 +-
.../impl/metadata/SofaMapping_implTest.java | 6 +-
.../sequencer/SequencerCapabilityLanguageTest.java | 6 +-
.../impl/sequencer/SequencerFixedTest.java | 18 +-
.../impl/sequencer/SequencerTestAnnotator.java | 3 +-
.../uima/cas/impl/BinaryCasSerDesPerformance.java | 4 +-
.../cas/impl/CasPerformanceTuningSettingsTest.java | 79 -
.../java/org/apache/uima/cas/impl/CasPoolTest.java | 12 +-
.../apache/uima/cas/impl/CasResetResizeTest.java | 127 -
.../uima/cas/impl/CasTypeSystemMapperTst.java | 463 +-
.../apache/uima/cas/impl/CommonAuxHeapTest.java | 106 -
.../apache/uima/cas/impl/ComponentInfoTest.java | 4 +-
.../impl/ConcurrentBinarySerializationTest.java | 127 +
.../org/apache/uima/cas/impl/FSBagIndexTest.java | 99 +-
.../org/apache/uima/cas/impl/FeaturePathTest.java | 36 +-
.../java/org/apache/uima/cas/impl/Id2FSTest.java | 111 +
.../cas/impl/IndexCorruptionReportingTest.java | 19 +-
.../org/apache/uima/cas/impl/JCasReinitTest.java | 95 +
.../uima/cas/impl/OrderedFsSet_array_test.java | 220 +
.../org/apache/uima/cas/impl/SelectFsTest.java | 302 +
.../apache/uima/cas/impl/SelectFsTestNoJCas.java | 66 +
.../java/org/apache/uima/cas/impl/SerDesTest4.java | 1128 ++-
.../java/org/apache/uima/cas/impl/SerDesTest6.java | 648 +-
.../org/apache/uima/cas/impl/SerDesTstCommon.java | 9 +-
.../uima/cas/impl/UnambiguousIteratorTest.java | 6 +-
.../apache/uima/cas/impl/XCASDeserializerTest.java | 118 +-
.../uima/cas/impl/XmiCasDeserializerTest.java | 355 +-
.../apache/uima/cas/impl/XmiCasSerializerTest.java | 4 +-
.../java/org/apache/uima/cas/impl/XmiCompare.java | 530 ++
.../apache/uima/cas/test/AnnotationIndexTest.java | 153 +-
.../uima/cas/test/AnnotationIteratorTest.java | 639 +-
.../apache/uima/cas/test/AnnotationTreeTest.java | 21 +-
.../java/org/apache/uima/cas/test/ArrayFSTest.java | 6 +-
.../org/apache/uima/cas/test/ArrayIndexTest.java | 4 +-
.../org/apache/uima/cas/test/CASInitializer.java | 14 +-
.../java/org/apache/uima/cas/test/CASTest.java | 9 +-
.../org/apache/uima/cas/test/CASTestSetup.java | 55 +-
.../uima/cas/test/CompleteSerializationTest.java | 107 +-
.../org/apache/uima/cas/test/CrossAnnotation.java | 151 +-
.../apache/uima/cas/test/CrossAnnotation_Type.java | 94 -
.../apache/uima/cas/test/FeatureStructureTest.java | 267 +-
.../apache/uima/cas/test/FilteredIteratorTest.java | 51 +-
.../org/apache/uima/cas/test/FloatArrayFSTest.java | 6 +-
.../apache/uima/cas/test/GetAllIndexedTest.java | 8 +-
.../apache/uima/cas/test/GrowingTheCasTest.java | 103 +-
.../cas/test/GrowingTheCasTestNoJcasCache.java | 73 +-
.../apache/uima/cas/test/IndexComparitorTest.java | 67 +-
.../uima/cas/test/IndexRepositoryMergingTest.java | 114 +
.../apache/uima/cas/test/IndexRepositoryTest.java | 128 +-
.../uima/cas/test/IndexSerializationTest.java | 9 +-
.../org/apache/uima/cas/test/IntArrayFSTest.java | 6 +-
.../org/apache/uima/cas/test/IteratorTest.java | 360 +-
.../apache/uima/cas/test/IteratorTestSorted.java | 154 +-
.../apache/uima/cas/test/JCasClassLoaderTest.java | 6 -
.../org/apache/uima/cas/test/JcasSofaTest.java | 18 +-
.../java/org/apache/uima/cas/test/Level_1.java | 252 +-
.../org/apache/uima/cas/test/Level_1_Type.java | 111 -
.../java/org/apache/uima/cas/test/Level_2.java | 186 +-
.../org/apache/uima/cas/test/Level_2_Type.java | 80 -
.../java/org/apache/uima/cas/test/Level_3.java | 186 +-
.../org/apache/uima/cas/test/Level_3_Type.java | 80 -
.../java/org/apache/uima/cas/test/Level_4.java | 186 +-
.../org/apache/uima/cas/test/Level_4_Type.java | 80 -
.../java/org/apache/uima/cas/test/Level_5.java | 186 +-
.../org/apache/uima/cas/test/Level_5_Type.java | 80 -
.../java/org/apache/uima/cas/test/Level_6.java | 186 +-
.../org/apache/uima/cas/test/Level_6_Type.java | 80 -
.../uima/cas/test/NewPrimitiveTypesTest.java | 55 +-
.../java/org/apache/uima/cas/test/SelectTest.java | 66 +
.../java/org/apache/uima/cas/test/Sentence.java | 101 +-
.../org/apache/uima/cas/test/Sentence_Type.java | 74 -
.../uima/cas/test/SerializationNoMDTest.java | 26 +-
.../uima/cas/test/SerializationReinitTest.java | 40 +-
.../java/org/apache/uima/cas/test/SofaTest.java | 61 +-
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.../apache/uima/jcas/cas/AnnotationBase_Type.class | Bin 0 -> 2489 bytes
.../org/apache/uima/jcas/cas/TOP.class | Bin 0 -> 3864 bytes
.../org/apache/uima/jcas/cas/TOP_Type.class | Bin 0 -> 3193 bytes
.../org/apache/uima/tutorial/DateAnnot.class | Bin 0 -> 1285 bytes
.../apache/uima/tutorial/DateAnnot_Type$1.class | Bin 0 -> 1545 bytes
.../org/apache/uima/tutorial/DateAnnot_Type.class | Bin 0 -> 1792 bytes
.../org/apache/uima/tutorial/DateTimeAnnot.class | Bin 0 -> 2377 bytes
.../uima/tutorial/DateTimeAnnot_Type$1.class | Bin 0 -> 1577 bytes
.../apache/uima/tutorial/DateTimeAnnot_Type.class | Bin 0 -> 3057 bytes
.../org/apache/uima/tutorial/Meeting.class | Bin 0 -> 4951 bytes
.../org/apache/uima/tutorial/Meeting_Type$1.class | Bin 0 -> 1529 bytes
.../org/apache/uima/tutorial/Meeting_Type.class | Bin 0 -> 4361 bytes
.../org/apache/uima/tutorial/RoomNumber.class | Bin 0 -> 2311 bytes
.../apache/uima/tutorial/RoomNumber_Type$1.class | Bin 0 -> 1553 bytes
.../org/apache/uima/tutorial/RoomNumber_Type.class | Bin 0 -> 2990 bytes
.../org/apache/uima/tutorial/SentenceAnnot.class | Bin 0 -> 1295 bytes
.../uima/tutorial/SentenceAnnot_Type$1.class | Bin 0 -> 1577 bytes
.../apache/uima/tutorial/SentenceAnnot_Type.class | Bin 0 -> 1822 bytes
.../org/apache/uima/tutorial/TimeAnnot.class | Bin 0 -> 1285 bytes
.../apache/uima/tutorial/TimeAnnot_Type$1.class | Bin 0 -> 1545 bytes
.../org/apache/uima/tutorial/TimeAnnot_Type.class | Bin 0 -> 1792 bytes
.../org/apache/uima/tutorial/UimaAcronym.class | Bin 0 -> 2543 bytes
.../apache/uima/tutorial/UimaAcronym_Type$1.class | Bin 0 -> 1561 bytes
.../apache/uima/tutorial/UimaAcronym_Type.class | Bin 0 -> 3026 bytes
.../org/apache/uima/tutorial/UimaMeeting.class | Bin 0 -> 1783 bytes
.../apache/uima/tutorial/UimaMeeting_Type$1.class | Bin 0 -> 1561 bytes
.../apache/uima/tutorial/UimaMeeting_Type.class | Bin 0 -> 1802 bytes
.../org/apache/uima/tutorial/WordAnnot.class | Bin 0 -> 1283 bytes
.../apache/uima/tutorial/WordAnnot_Type$1.class | Bin 0 -> 1545 bytes
.../org/apache/uima/tutorial/WordAnnot_Type.class | Bin 0 -> 1790 bytes
.../test/v2_jcas_sources}/example/PersonTitle.java | 0
.../v2_jcas_sources}/example/PersonTitle_Type.java | 0
.../apache/uima/examples/tokenizer/Sentence.java | 0
.../uima/examples/tokenizer/Sentence_Type.java | 0
.../tokenizer/SimpleTokenAndSentenceAnnotator.java | 0
.../org/apache/uima/examples/tokenizer/Token.java | 0
.../apache/uima/examples/tokenizer/Token_Type.java | 0
.../org/apache/uima/tutorial/DateAnnot.java | 89 +
.../org/apache/uima/tutorial/DateAnnot_Type.java | 0
.../org/apache/uima/tutorial/DateTimeAnnot.java | 118 +
.../apache/uima/tutorial/DateTimeAnnot_Type.java | 0
.../org/apache/uima/tutorial/Meeting.java | 213 +
.../org/apache/uima/tutorial/Meeting_Type.java | 0
.../org/apache/uima/tutorial/RoomNumber.java | 115 +
.../org/apache/uima/tutorial/RoomNumber_Type.java | 0
.../org/apache/uima/tutorial/SentenceAnnot.java | 90 +
.../apache/uima/tutorial/SentenceAnnot_Type.java | 0
.../org/apache/uima/tutorial/TimeAnnot.java | 89 +
.../org/apache/uima/tutorial/TimeAnnot_Type.java | 0
.../org/apache/uima/tutorial/UimaAcronym.java | 122 +
.../org/apache/uima/tutorial/UimaAcronym_Type.java | 0
.../org/apache/uima/tutorial/UimaMeeting.java | 94 +
.../org/apache/uima/tutorial/UimaMeeting_Type.java | 0
.../org/apache/uima/tutorial/WordAnnot.java | 90 +
.../org/apache/uima/tutorial/WordAnnot_Type.java | 0
unused-saved/README.txt | 3 +
.../apache/uima/cas/impl/AnnotationIndexImpl.java | 221 +
.../cas/impl/FSIteratorWrapperDoubleCheck.java | 156 +
.../apache/uima/cas/impl/FSListIteratorImpl.java | 161 +
.../src/org/apache/uima/cas/impl/FSRBTIndex.java | 151 +
.../org/apache/uima/cas/impl/FeatureArrayImpl.java | 59 +
.../apache/uima/cas/impl/FeatureGetter_int.java | 26 +
.../apache/uima/cas/impl/FeatureGetter_ref.java | 26 +
.../apache/uima/cas/impl/FeatureSetter_int.java | 25 +
.../apache/uima/cas/impl/FeatureSetter_ref.java | 25 +
.../uima/cas/impl/FeatureStructureClassGen.java | 489 ++
.../src/org/apache/uima/cas/impl/FsIndex_aggr.java | 233 +
.../uima/cas/impl/FsIterator_set_sorted.java | 264 +
.../impl/FsIterator_set_sorted_navset_version.java | 270 +
.../apache/uima/cas/impl/FsIterator_subtypes.java | 58 +
.../cas/impl/FsIterator_subtypes_list_unused.java | 34 +
.../uima/cas/impl/JCasCoverClassFactoryTest.java | 61 +
.../src/org/apache/uima/cas/impl/TypeImplList.java | 36 +
.../src/org/apache/uima/cas/impl/TypeImplMap.java | 45 +
.../impl/XXXdont_use_JCasCoverClassFactory.java | 505 ++
.../impl/JCasCoverClassFactoryTest.java | 64 +
.../util/ComparableIntPointerIterator.java | 47 +
.../apache/uima/internal/util/Int2IntHashMap.java | 517 ++
.../uima/internal/util/Int2IntHashMapTest.java | 87 +
.../apache/uima/internal/util/Int2IntPerfTest.java | 153 +
.../internal/util/UIMATypeSystemClassLoader.java | 154 +
.../util/UIMATypeSystemClassLoaderInjector.java | 120 +
.../org/apache/uima/jcas/cas/JavaObjectArray.java | 193 +
.../src/org/apache/uima/jcas/impl/CASMetadata.java | 41 +
.../uima/jcas/impl/JCasCoverClassFactory.java | 352 +
.../uima/jcas/impl/JCasCoverClassFactoryTest.java | 61 +
.../src/org/apache/uima/jcas/impl/JCasHashMap.java | 444 ++
.../uima/jcas/impl/JCasHashMapCompareTest.java | 198 +
.../apache/uima/jcas/impl/JCasHashMapSubMap.java | 0
.../org/apache/uima/jcas/impl/JCasHashMapTest.java | 468 ++
.../apache/uima/jcasgen/JCasClassDefinition.java | 67 +
.../uima/jcasgen/impl/JCasClassConversion.java | 254 +
.../src/org/apache/uima/jcasgen/impl/package.html | 36 +
.../src/org/apache/uima/jcasgen/package.html | 38 +
.../uima/tools/jcas/internal/AnalyzeContent.java | 345 +
.../uima/tools/jcasgen/DecompiledFilter.java | 156 +
.../src/study/asm/decompiled/AnnotationDumpV3.java | 284 +
1535 files changed, 110173 insertions(+), 55025 deletions(-)