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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/03/02 12:21:42 UTC
svn commit: r941912 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-in-use/index.html
Author: buildbot
Date: Mon Mar 2 11:21:41 2015
New Revision: 941912
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/introduction/taverna-in-use/index.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
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Modified: websites/staging/taverna/trunk/content/introduction/taverna-in-use/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/introduction/taverna-in-use/index.html (original)
+++ websites/staging/taverna/trunk/content/introduction/taverna-in-use/index.html Mon Mar 2 11:21:41 2015
@@ -369,7 +369,7 @@ Taverna applications have been implement
<tr>
<th><a href="/introduction/taverna-in-use/document-analysis">Document and image analysis<br />
Digital preservation</a></th>
-<td><a href="/introduction/taverna-in-use/by-domain/document-analysis#islandora">Islandora</a><a href="/introduction/related-projects/scape/"><br />
+<td><a href="/introduction/taverna-in-use/by-domain/document-analysis#islandora">Islandora</a><a href="/introduction/related-projects#scape/"><br />
SCAPE</a><br />
<a href="/introduction/taverna-in-use/by-domain/document-analysis#impact">IMPACT</a><br />
<a href="/introduction/taverna-in-use/by-domain/document-analysis#dae">DAE</a></td>
@@ -500,10 +500,10 @@ SCAPE</a><br />
<tr>
<th><a href="/introduction/taverna-in-use/social-sciences">Social sciences</a></th>
<td><a href="/introduction/taverna-in-use/social-sciences#impact">IMPACT</a></td>
-<td><a href="/introduction/introduction/related-projects#neiss">NeISS</a></td>
+<td><a href="/introduction/related-projects#neiss">NeISS</a></td>
<td>-</td>
<td>-</td>
-<td><a href="/introduction/introduction/related-projects#neiss">NeISS</a></td>
+<td><a href="/introduction/related-projects#neiss">NeISS</a></td>
<td>-</td>
</tr>
@@ -511,9 +511,9 @@ SCAPE</a><br />
<th>Other</th>
<td>-</td>
<td>-</td>
-<td><a href="/introduction/taverna-in-use/on-a-grid#moteur">MOTEUR</a><br />
+<td><a href="/introduction/taverna-in-use/other#moteur">MOTEUR</a><br />
<a href="http://www.mygrid.org.uk/outreach/collaboration#collaboration-with-nbic/" target="_blank">NBIC</a><br />
-<a href="/introduction/taverna-in-use/on-a-grid#simdat">SIMDAT</a><br />
+<a href="/introduction/taverna-in-use/other#simdat">SIMDAT</a><br />
NGS</td>
<td>-</td>
<td>-</td>
@@ -525,7 +525,7 @@ NGS</td>
<p><a name="server" </a></p>
<h2 id="as-a-server">As a server</h2>
-<p>Taverna has been used as a service and deployed using <a href="/download/taverna-server">Taverna Server</a> by several projects:</p>
+<p>Taverna has been used as a service and deployed using <a href="/download/server/">Taverna Server</a> by several projects:</p>
<ul>
<li><a href="/introduction/related-projects#biovel">BioVel</a> - establishing an international e-Laboratory to enable scientists to work in
biodiversity sciences</li>
@@ -547,18 +547,19 @@ NGS</td>
<li><a href="/introduction/related-projects#cagrid">caGrid</a> â the use of Taverna 2 workflows to link together resources provided by the open source grid
software infrastructure developed by the US NCI caBIG aimed at enabling multi-institutional cancer data
sharing and analysis in the US</li></li>
-<li>Europeâs leading grid computing project <a href="http://webcache.googleusercontent.com/search?q=cache:SO2-xLmcod4J:www.eu-egee.org/+&amp;cd=1&amp;hl=en&amp;ct=clnk&amp;gl=uk">EGEE</a>, piloted Taverna over EGEE gLite services</li>
+<li>Europeâs leading grid computing project <a href="http://eu-egee-org.web.cern.ch">EGEE</a>, piloted Taverna over EGEE gLite services</li>
<li><a href="/introduction/taverna-in-use/databases#embrace">European Model for Bioinformatics Research And Community Education</a> (EMBRACE)</li>
<li><a href="/introduction/taverna-in-use/medicine#knowarc">Know-how Sharing Technology Based on ARC Services and Open Standards</a> (KnowARC) developed prototype to
use Taverna as direct interface to Grid resources running ARC</li>
-<li><a href="/introduction/taverna-in-use/on-a-grid#moteur">MOTEUR</a> - running Taverna 1 workflows on EGEE grid</li>
+<li><a href="/introduction/taverna-in-use/other#moteur">MOTEUR</a> - running Taverna 1 workflows on EGEE grid</li>
<li><a href="http://www.mygrid.org.uk/outreach/collaboration/collaboration-with-nbic/">Netherlands BioInformatics Centre</a> (NBIC)</li>
-<li><a href="/introduction/taverna-in-use/on-a-grid#simdat">Grids for Industrial Product Development</a> (SIMDAT)</li>
+<li><a href="/introduction/taverna-in-use/other#simdat">Grids for Industrial Product Development</a> (SIMDAT)</li>
<li><a href="http://www.mygrid.org.uk/dev/wiki/display/plugins/Submitting+HPC+jobs+from+Taverna+using+GridSAM">JSDL plugin for Taverna 1.7.x</a> that allows you to submit services within a workflow to a grid using
GridSAM</li>
<li>Taverna and myExperiment on NGS</li>
</ul>
-<p>Learn more about how <a href="http://dev.mygrid.org.uk/wiki/display/taverna/Taverna%2C+Grids+and+Clouds">Taverna workï¬ows can â©operate â©over a grid infrastructure</a></p>
+<p>Learn more about how
+ <a href="http://dev.mygrid.org.uk/wiki/display/tav250/Taverna+and+grids+and+clouds">Taverna workï¬ows can â©operate â©over a grid infrastructure</a></p>
<p><a name="cloud" </a></p>
<h2 id="on-a-cloud">On a cloud</h2>
<p>Taverna has been used as a service deployed on a cloud by several projects:</p>
@@ -598,7 +599,7 @@ These projects include:</p>
<li><a href="/introduction/taverna-in-use/protein-and-proteomics#prodom">ProDom</a> - using Taverna workflowa to perform searches and comparisons on the content of the ProDom
database</li>
<li><a href="/introduction/taverna-in-use/biology#metware">MetWare</a> - provides applications, databases and workflows for metabolomics</li>
-<li><a href="/introduction/introduction/related-projects#neiss">NeISS</a> â runnig social simulations workflows deployed on a Taverna 2 Server in a social simulations
+<li><a href="/introduction/related-projects#neiss">NeISS</a> â runnig social simulations workflows deployed on a Taverna 2 Server in a social simulations
platform with a portal front-end</li>
</ul></li>
</ul>
@@ -608,7 +609,7 @@ These projects include:</p>
<ul>
<li><a href="/introduction/taverna-in-use#bioinformatics/biolinux">BioLinux</a> - a version of Ubuntu Linux that includes distributions of many bioinformatics programs and
Taverna</li>
-<li><a href="http://www.omii.ac.uk/wiki/SoftwareOverview">OMII-UK</a> - included with the OMII-UK's open-source software developed to enable a sustained future for
+<li><a href="http://en.wikipedia.org/wiki/OMII-UK">OMII-UK</a> - included with the OMII-UK's open-source software developed to enable a sustained future for
the UK e-Research community</li>
<li><a href="/introduction/taverna-in-use/biology#sb-os">Systems Biology Operational Software (SB.OS)</a> - Systems Biology Software based on Ubuntu Linux
containing the distribution of Taverna</li>
@@ -624,14 +625,15 @@ These projects include:</p>
<li><a href="/introduction/taverna-in-use/astronomy">Astronomy</a></li>
<li><a href="/introduction/taverna-in-use/by-domain/biodiversity">Biodiversity</a></li>
<li><a href="/introduction/taverna-in-use/bioinformatics">Bioinformatics</a></li>
-<li><a href="introduction/taverna-in-use/biology">Biology</a></li>
+<li><a href="/introduction/taverna-in-use/biology">Biology</a></li>
<li><a href="/introduction/taverna-in-use/chemistry">Chemistry</a></li>
<li><a href="/introduction/taverna-in-use/data-and-text-mining">Data and text mining</a></li>
<li><a href="/introduction/taverna-in-use/databases">Databases</a></li>
-<li><a href="/introduction/taverna-in-use/by-domain/document-analysis">Document and image analysis</a> (digital preservation)</li>
+<li><a href="/introduction/taverna-in-use/document-analysis">Document and image analysis</a>
+ (digital preservation)</li>
<li><a href="/introduction/taverna-in-use/education">Education</a></li>
<li><a href="/introduction/taverna-in-use/engineering">Engineering</a></li>
-<li><a href="/introduction/taverna-in-use/by-domain/geoinformatics">Geoinformatics</a></li>
+<li><a href="/introduction/taverna-in-use/geoinformatics">Geoinformatics</a></li>
<li><a href="/introduction/taverna-in-use/information-quality">Information quality</a></li>
<li><a href="/introduction/taverna-in-use/medicine">Medicine</a></li>
<li><a href="/introduction/taverna-in-use/multimedia">Multimedia</a></li>
@@ -651,7 +653,7 @@ formalise or share existing research. </
<p><a href="/introduction/taverna-in-use/disease-research#vph-dareit">VP-DATE@IT</a> and <a href="http://www.vph-share.eu/">VPH-SHARE</a> - active</p>
<p><a name="2012"></a></p>
<h3 id="2012">2012</h3>
-<p><a href="/introduction/taverna-in-use/by-domain/geoinformatics#pml">PML</a> Plymouth Marine Laboratory (Institute)</p>
+<p><a href="/introduction/taverna-in-use/geoinformatics#pml">PML</a> Plymouth Marine Laboratory (Institute)</p>
<p><a name="2011"></a></p>
<h3 id="2011">2011</h3>
<p><a href="/introduction/related-projects#tsb">TSB</a> Completed Dec-2012 <br />
@@ -706,8 +708,8 @@ formalise or share existing research. </
<a href="/introduction/taverna-in-use/medicine#knowarc">KnowARC</a> - Completed 2009 <br />
<a href="/introduction/taverna-in-use/medicine#miasgrid">MIASGrid</a> - Completed 2006 <br />
<a href="/introduction/taverna-in-use/multimedia#echase">eCHASE</a> - Completed2006 <br />
-<a href="/introduction/taverna-in-use/on-a-grid#moteur">MOTEUR</a> - Active <br />
-<a href="/introduction/introduction/taverna-in-use/bioinformatics#planet">PLANET</a> - Active</p>
+<a href="/introduction/taverna-in-use/other#moteur">MOTEUR</a> - Active <br />
+<a href="/introduction/taverna-in-use/bioinformatics#planet">PLANET</a> - Active</p>
<p><a name="2005"></a></p>
<h2 id="2005">2005</h2>
<p><a href="/introduction/taverna-in-use/biology#enfin">ENFIN</a> - Completed Nov-2010 <br />
@@ -718,7 +720,7 @@ formalise or share existing research. </
<a href="/introduction/taverna-in-use/bioinformatics#measuring-enzyme-characteristics-of-yeast">Measuring yeast characteristics</a> - Completed Apr-2010</p>
<p><a name="2004"></a></p>
<h2 id="2004">2004</h2>
-<p><a href="/introduction/taverna-in-use/databases/efamily">eFamily</a> - Active <br />
+<p><a href="/introduction/taverna-in-use/databases#efamily">eFamily</a> - Active <br />
<a href="/introduction/taverna-in-use/disease-research#williams-beuren-syndrome">Williams-Beuren syndrome</a> - Active <br />
<a href="/introduction/taverna-in-use/information-quality#qurator">Qurator</a> - Completed Jul-2007
<a href="/introduction/taverna-in-use/protein-and-proteomics#prodom">ProDom</a> - Database <br />
@@ -729,7 +731,7 @@ formalise or share existing research. </
<p><a href="/introduction/taverna-in-use/genome-and-gene-expression#casimir">CASIMIR</a> - Completed May-2006</p>
<p><a name="2001"></a></p>
<h2 id="2001">2001</h2>
-<p><a href="/introduction/taverna-in-use/on-a-grid#simdat">SIMDAT</a> - Active <br />
+<p><a href="/introduction/taverna-in-use/other#simdat">SIMDAT</a> - Active <br />
<a href="/introduction/taverna-in-use/annotation#adoption-by-moby">Moby consortium</a> - Active <br />
<a href="/introduction/taverna-in-use/astronomy#astrogrid">AstroGrid</a> - Completed 2009</p></div>