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Posted to commits@airavata.apache.org by sc...@apache.org on 2016/02/03 14:50:32 UTC
[1/8] airavata-php-gateway git commit: adding datacat web browser
initial files
Repository: airavata-php-gateway
Updated Branches:
refs/heads/develop f77cd6fff -> 9c8eb1fd7
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/public/js/datacat/jquery-1.7.min.js
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diff --git a/public/js/datacat/jquery-1.7.min.js b/public/js/datacat/jquery-1.7.min.js
new file mode 100644
index 0000000..3ca5e0f
--- /dev/null
+++ b/public/js/datacat/jquery-1.7.min.js
@@ -0,0 +1,4 @@
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<TRUNCATED>
[5/8] airavata-php-gateway git commit: fixing some datacat
visualization issues
Posted by sc...@apache.org.
fixing some datacat visualization issues
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/fefaa795
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/fefaa795
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/fefaa795
Branch: refs/heads/develop
Commit: fefaa795b596c74e559258adc4e9947852994811
Parents: 8ab4d61
Author: scnakandala <su...@gmail.com>
Authored: Thu Jan 28 15:47:27 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Thu Jan 28 15:47:27 2016 -0500
----------------------------------------------------------------------
app/controllers/DataCatController.php | 2 +-
app/views/datacat/select.blade.php | 8 +++++---
app/views/datacat/summary.blade.php | 10 +++++-----
3 files changed, 11 insertions(+), 9 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/fefaa795/app/controllers/DataCatController.php
----------------------------------------------------------------------
diff --git a/app/controllers/DataCatController.php b/app/controllers/DataCatController.php
index d528f64..9bf9c94 100755
--- a/app/controllers/DataCatController.php
+++ b/app/controllers/DataCatController.php
@@ -17,7 +17,7 @@ class DataCatController extends BaseController
{
//FIXME
$result = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
- return View::make('datacat/summary', array("result" => $result[4]));
+ return View::make('datacat/summary', array("result" => $result[0]));
}
}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/fefaa795/app/views/datacat/select.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/select.blade.php b/app/views/datacat/select.blade.php
index 2cdb27e..bb9cac7 100755
--- a/app/views/datacat/select.blade.php
+++ b/app/views/datacat/select.blade.php
@@ -7,13 +7,14 @@
@parent
@stop
@section('content')
- <div class="container" style="max-width: 80%;">
+ <div style="margin: 25px">
@if ( isset($results))
@if (sizeof($results) != 0)
<div id="re" class="table-responsive">
<table class="table">
<tr>
<th>FinalGeom</th>
+ <th>InChI</th>
<th>Formula</th>
<th>Energy</th>
<th>ZPE</th>
@@ -26,7 +27,7 @@
<th>CodeVersion</th>
</tr>
@foreach($results as $key=>$result)
- @if(isset($result['Formula']))
+ @if(isset($result['InChI']))
<tr>
<td>
<div id="mol_{{$key}}" style="width: 100px; height: 100px; background-color: black;"></div>
@@ -59,7 +60,8 @@
</script>
@endif
</td>
- <td>@if(isset($result['Formula']))<a href="summary" target="_blank">{{$result['Formula']}}</a>@endif</td>
+ <td>@if(isset($result['InChI']))<a href="summary" target="_blank">{{$result['InChI']}}</a>@endif</td>
+ <td>@if(isset($result['Formula'])){{$result['Formula']}}@endif</td>
<td>@if(isset($result['Energy'])){{$result['Energy']}}@endif</td>
<td>@if(isset($result['ZPE'])){{$result['ZPE']}}@endif</td>
<td>@if(isset($result['CalcType'])){{$result['CalcType']}}@endif</td>
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/fefaa795/app/views/datacat/summary.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/summary.blade.php b/app/views/datacat/summary.blade.php
index bcfbbf6..a486b22 100755
--- a/app/views/datacat/summary.blade.php
+++ b/app/views/datacat/summary.blade.php
@@ -7,16 +7,12 @@
@parent
@stop
@section('content')
- <div class="container" style="max-width: 60%;">
+ <div style="margin-left: 5%; margin-right: 5%; margin-top: 5px; margin-bottom: 5px">
@if ( isset($result))
<h1>Molecule Summary</h1>
</br>
<table class="table table-bordered">
<tr>
- <td><strong>Formula</strong></td>
- <td>@if(isset($result['Formula']))<a href="#">{{$result['Formula']}}</a>@endif</td>
- </tr>
- <tr>
<td><strong>FinalGeom</strong></td>
<td>
<div id="mol" style="width: 200px; height: 200px; background-color: black;"></div>
@@ -66,6 +62,10 @@
<td><strong>CanonicalSMILES</strong></td>
<td>@if(isset($result['CanonicalSMILES'])){{$result['CanonicalSMILES']}}@endif</td>
</tr>
+ <tr>
+ <td><strong>Formula</strong></td>
+ <td>@if(isset($result['Formula']))<a href="#">{{$result['Formula']}}</a>@endif</td>
+ </tr>
</table>
</br>
[4/8] airavata-php-gateway git commit: adding intial version of
mollecular summary
Posted by sc...@apache.org.
adding intial version of mollecular summary
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/8ab4d616
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/8ab4d616
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/8ab4d616
Branch: refs/heads/develop
Commit: 8ab4d616fbb92b9be291bbb7e65ed99ffbfad268
Parents: bac76ae
Author: scnakandala <su...@gmail.com>
Authored: Wed Jan 27 16:44:36 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Wed Jan 27 16:44:36 2016 -0500
----------------------------------------------------------------------
app/controllers/DataCatController.php | 9 +-
app/routes.php | 1 +
app/views/datacat/select.blade.php | 2 +-
app/views/datacat/summary.blade.php | 333 +++++++++++++++++++++++++++++
4 files changed, 343 insertions(+), 2 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/8ab4d616/app/controllers/DataCatController.php
----------------------------------------------------------------------
diff --git a/app/controllers/DataCatController.php b/app/controllers/DataCatController.php
index fb821f6..d528f64 100755
--- a/app/controllers/DataCatController.php
+++ b/app/controllers/DataCatController.php
@@ -5,12 +5,19 @@ class DataCatController extends BaseController
public function select()
{
+ //FIXME
$results = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
if(!isset($results) || empty($results)){
$results = array();
}
-// var_dump($results);exit;
return View::make('datacat/select', array("results" => $results));
}
+ public function summary()
+ {
+ //FIXME
+ $result = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
+ return View::make('datacat/summary', array("result" => $result[4]));
+ }
+
}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/8ab4d616/app/routes.php
----------------------------------------------------------------------
diff --git a/app/routes.php b/app/routes.php
index e183220..057a41c 100755
--- a/app/routes.php
+++ b/app/routes.php
@@ -207,6 +207,7 @@ Route::post("gp/credential-store-token-change", "GatewayprofileController@cstCha
//DataCat
Route::get("datacat/select", "DataCatController@select");
+Route::get("datacat/summary", "DataCatController@summary");
//Management Dashboard
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/8ab4d616/app/views/datacat/select.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/select.blade.php b/app/views/datacat/select.blade.php
index ada2902..2cdb27e 100755
--- a/app/views/datacat/select.blade.php
+++ b/app/views/datacat/select.blade.php
@@ -59,7 +59,7 @@
</script>
@endif
</td>
- <td>@if(isset($result['Formula']))<a>{{$result['Formula']}}</a>@endif</td>
+ <td>@if(isset($result['Formula']))<a href="summary" target="_blank">{{$result['Formula']}}</a>@endif</td>
<td>@if(isset($result['Energy'])){{$result['Energy']}}@endif</td>
<td>@if(isset($result['ZPE'])){{$result['ZPE']}}@endif</td>
<td>@if(isset($result['CalcType'])){{$result['CalcType']}}@endif</td>
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/8ab4d616/app/views/datacat/summary.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/summary.blade.php b/app/views/datacat/summary.blade.php
new file mode 100755
index 0000000..bcfbbf6
--- /dev/null
+++ b/app/views/datacat/summary.blade.php
@@ -0,0 +1,333 @@
+@extends('layout.basic')
+{{ HTML::script('js/datacat/jquery-1.7.min.js')}}
+{{ HTML::script('js/datacat/Three.js')}}
+{{ HTML::script('js/datacat/GLmol.js')}}
+
+@section('page-header')
+ @parent
+@stop
+@section('content')
+ <div class="container" style="max-width: 60%;">
+ @if ( isset($result))
+ <h1>Molecule Summary</h1>
+ </br>
+ <table class="table table-bordered">
+ <tr>
+ <td><strong>Formula</strong></td>
+ <td>@if(isset($result['Formula']))<a href="#">{{$result['Formula']}}</a>@endif</td>
+ </tr>
+ <tr>
+ <td><strong>FinalGeom</strong></td>
+ <td>
+ <div id="mol" style="width: 200px; height: 200px; background-color: black;"></div>
+ @if(isset($result['PDB']))
+ <textarea id="mol_src" style="display: none;">{{$result['PDB']}}</textarea>
+ <script type="text/javascript">
+ $( document ).ready(function() {
+ var mol = new GLmol('mol', true);
+
+ mol.defineRepresentation = function () {
+ var all = this.getAllAtoms();
+ var hetatm = this.removeSolvents(this.getHetatms(all));
+ this.colorByAtom(all, {});
+ this.colorByChain(all);
+ var asu = new THREE.Object3D();
+
+ this.drawBondsAsStick(asu, hetatm, this.cylinderRadius, this.cylinderRadius);
+ this.drawBondsAsStick(asu, this.getResiduesById(this.getSidechains(this.getChain(all, ['A'])), [58, 87]),
+ this.cylinderRadius, this.cylinderRadius);
+ this.drawBondsAsStick(asu, this.getResiduesById(this.getSidechains(this.getChain(all, ['B'])), [63, 92]),
+ this.cylinderRadius, this.cylinderRadius);
+ this.drawCartoon(asu, all, this.curveWidth, this.thickness);
+
+ this.drawSymmetryMates2(this.modelGroup, asu, this.protein.biomtMatrices);
+ this.modelGroup.add(asu);
+ };
+
+ mol.loadMolecule();
+ });
+ </script>
+ @endif
+ </td>
+ </tr>
+ <tr>
+ <td><strong>InChI</strong></td>
+ <td>@if(isset($result['InChI'])){{$result['InChI']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>InChIKey</strong></td>
+ <td>@if(isset($result['InChIKey'])){{$result['InChIKey']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>SMILES</strong></td>
+ <td>@if(isset($result['SMILES'])){{$result['SMILES']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CanonicalSMILES</strong></td>
+ <td>@if(isset($result['CanonicalSMILES'])){{$result['CanonicalSMILES']}}@endif</td>
+ </tr>
+ </table>
+
+ </br>
+ <h3>Detailed Information</h3>
+ <table class="table table-bordered">
+ <tr>
+ <td><strong>ParsedBy</strong></td>
+ <td>@if(isset($result['ParsedBy'])){{$result['ParsedBy']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Charge</strong></td>
+ <td>@if(isset($result['Charge'])){{$result['Charge']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Multiplicity</strong></td>
+ <td>@if(isset($result['Multiplicity'])){{$result['Multiplicity']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Keywords</strong></td>
+ <td>@if(isset($result['Keywords'])){{$result['Keywords']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CalcType</strong></td>
+ <td>@if(isset($result['CalcType'])){{$result['CalcType']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Methods</strong></td>
+ <td>@if(isset($result['Methods'])){{$result['Methods']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Basis</strong></td>
+ <td>@if(isset($result['Basis'])){{$result['Basis']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NumBasis</strong></td>
+ <td>@if(isset($result['NumBasis'])){{$result['NumBasis']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NumFC</strong></td>
+ <td>@if(isset($result['NumFC'])){{$result['NumFC']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NumVirt</strong></td>
+ <td>@if(isset($result['NumVirt'])){{$result['NumVirt']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>JobStatus</strong></td>
+ <td>@if(isset($result['JobStatus'])){{$result['JobStatus']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>FinTime</strong></td>
+ <td>@if(isset($result['FinTime'])){{$result['FinTime']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>InitGeom</strong></td>
+ <td>@if(isset($result['InitGeom'])){{$result['InitGeom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>FinalGeom</strong></td>
+ <td>@if(isset($result['FinalGeom'])){{$result['FinalGeom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>PG</strong></td>
+ <td>@if(isset($result['PG'])){{$result['PG']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ElecSym</strong></td>
+ <td>@if(isset($result['ElecSym'])){{$result['ElecSym']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NImag</strong></td>
+ <td>@if(isset($result['NImag'])){{$result['NImag']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Energy</strong></td>
+ <td>@if(isset($result['Energy'])){{$result['Energy']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>EnergyKcal</strong></td>
+ <td>@if(isset($result['EnergyKcal'])){{$result['EnergyKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ZPE</strong></td>
+ <td>@if(isset($result['ZPE'])){{$result['ZPE']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ZPEKcal</strong></td>
+ <td>@if(isset($result['ZPEKcal'])){{$result['ZPEKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>HF</strong></td>
+ <td>@if(isset($result['HF'])){{$result['HF']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>HFKcal</strong></td>
+ <td>@if(isset($result['HFKcal'])){{$result['HFKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Thermal</strong></td>
+ <td>@if(isset($result['Thermal'])){{$result['Thermal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ThermalKcal</strong></td>
+ <td>@if(isset($result['ThermalKcal'])){{$result['ThermalKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Enthalpy</strong></td>
+ <td>@if(isset($result['Enthalpy'])){{$result['Enthalpy']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>EnthalpyKcal</strong></td>
+ <td>@if(isset($result['EnthalpyKcal'])){{$result['EnthalpyKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Entropy</strong></td>
+ <td>@if(isset($result['Entropy'])){{$result['Entropy']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>EntropyKcal</strong></td>
+ <td>@if(isset($result['EntropyKcal'])){{$result['EntropyKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Gibbs</strong></td>
+ <td>@if(isset($result['Gibbs'])){{$result['Gibbs']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>GibbsKcal</strong></td>
+ <td>@if(isset($result['GibbsKcal'])){{$result['GibbsKcal']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>OrbSym</strong></td>
+ <td>@if(isset($result['OrbSym'])){{$result['OrbSym']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Dipole</strong></td>
+ <td>@if(isset($result['Dipole'])){{$result['Dipole']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Freq</strong></td>
+ <td>@if(isset($result['Freq'])){{$result['Freq']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>AtomWeigh</strong></td>
+ <td>@if(isset($result['AtomWeigh'])){{$result['AtomWeigh']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Conditions</strong></td>
+ <td>@if(isset($result['Conditions'])){{$result['Conditions']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ReacGeom</strong></td>
+ <td>@if(isset($result['ReacGeom'])){{$result['ReacGeom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ProdGeom</strong></td>
+ <td>@if(isset($result['ProdGeom'])){{$result['ProdGeom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>MulCharge</strong></td>
+ <td>@if(isset($result['MulCharge'])){{$result['MulCharge']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NatCharge</strong></td>
+ <td>@if(isset($result['NatCharge'])){{$result['NatCharge']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>S2</strong></td>
+ <td>@if(isset($result['S2'])){{$result['S2']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CodeVersion</strong></td>
+ <td>@if(isset($result['CodeVersion'])){{$result['CodeVersion']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CalcMachine</strong></td>
+ <td>@if(isset($result['CalcMachine'])){{$result['CalcMachine']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CalcBy</strong></td>
+ <td>@if(isset($result['CalcBy'])){{$result['CalcBy']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>MemCost</strong></td>
+ <td>@if(isset($result['MemCost'])){{$result['MemCost']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>TimeCost</strong></td>
+ <td>@if(isset($result['TimeCost'])){{$result['TimeCost']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CPUTime</strong></td>
+ <td>@if(isset($result['CPUTime'])){{$result['CPUTime']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Convergence</strong></td>
+ <td>@if(isset($result['Convergence'])){{$result['Convergence']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>FullPath</strong></td>
+ <td>@if(isset($result['FullPath'])){{$result['FullPath']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>InputButGeom</strong></td>
+ <td>@if(isset($result['InputButGeom'])){{$result['InputButGeom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>OtherInfo</strong></td>
+ <td>@if(isset($result['OtherInfo'])){{$result['OtherInfo']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Comments</strong></td>
+ <td>@if(isset($result['Comments'])){{$result['Comments']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NAtom</strong></td>
+ <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Nmo</strong></td>
+ <td>@if(isset($result['Nmo'])){{$result['Nmo']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NBasis</strong></td>
+ <td>@if(isset($result['NBasis'])){{$result['NBasis']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>AtomNos</strong></td>
+ <td>@if(isset($result['AtomNos'])){{json_encode($result['AtomNos'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NAtom</strong></td>
+ <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>NAtom</strong></td>
+ <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>Homos</strong></td>
+ <td>@if(isset($result['Homos'])){{json_encode($result['Homos'])}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ScfEnerfgies</strong></td>
+ <td>@if(isset($result['ScfEnergies'])){{json_encode($result['ScfEnergies'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>CoreElectrons</strong></td>
+ <td>@if(isset($result['CoreElectrons'])){{json_encode($result['CoreElectrons'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>MoEnergies</strong></td>
+ <td>@if(isset($result['MoEnergies'])){{json_encode($result['MoEnergies'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>AtomCoords</strong></td>
+ <td>@if(isset($result['AtomCoords'])){{json_encode($result['AtomCoords'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ <tr>
+ <td><strong>ScfTargets</strong></td>
+ <td>@if(isset($result['ScfTargets'])){{json_encode($result['ScfTargets'], JSON_PRETTY_PRINT)}}@endif</td>
+ </tr>
+ </table>
+ @endif
+ </div>
+@stop
\ No newline at end of file
[6/8] airavata-php-gateway git commit: minor ui changes
Posted by sc...@apache.org.
minor ui changes
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9af720f8
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9af720f8
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/9af720f8
Branch: refs/heads/develop
Commit: 9af720f845bf7ad221bf5148066c6242489df9cf
Parents: fefaa79
Author: scnakandala <su...@gmail.com>
Authored: Tue Feb 2 20:29:45 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Tue Feb 2 20:29:45 2016 -0500
----------------------------------------------------------------------
app/controllers/DataCatController.php | 6 +-
app/views/datacat/summary.blade.php | 262 +++++++++++++++++++++--------
2 files changed, 193 insertions(+), 75 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9af720f8/app/controllers/DataCatController.php
----------------------------------------------------------------------
diff --git a/app/controllers/DataCatController.php b/app/controllers/DataCatController.php
index 9bf9c94..5f7bbd3 100755
--- a/app/controllers/DataCatController.php
+++ b/app/controllers/DataCatController.php
@@ -6,7 +6,7 @@ class DataCatController extends BaseController
public function select()
{
//FIXME
- $results = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
+ $results = json_decode(file_get_contents('http://localhost:8000/query-api/select?q=sddslfnlsdf'), true);
if(!isset($results) || empty($results)){
$results = array();
}
@@ -16,8 +16,8 @@ class DataCatController extends BaseController
public function summary()
{
//FIXME
- $result = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
- return View::make('datacat/summary', array("result" => $result[0]));
+ $result = json_decode(file_get_contents('http://localhost:8000/query-api/select?q=sddslfnlsdf'), true);
+ return View::make('datacat/summary', array("result" => $result[1]));
}
}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9af720f8/app/views/datacat/summary.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/summary.blade.php b/app/views/datacat/summary.blade.php
index a486b22..921f26f 100755
--- a/app/views/datacat/summary.blade.php
+++ b/app/views/datacat/summary.blade.php
@@ -48,7 +48,7 @@
</tr>
<tr>
<td><strong>InChI</strong></td>
- <td>@if(isset($result['InChI'])){{$result['InChI']}}@endif</td>
+ <td>@if(isset($result['InChI']))<a href="#">{{$result['InChI']}}</a>@endif</td>
</tr>
<tr>
<td><strong>InChIKey</strong></td>
@@ -62,271 +62,389 @@
<td><strong>CanonicalSMILES</strong></td>
<td>@if(isset($result['CanonicalSMILES'])){{$result['CanonicalSMILES']}}@endif</td>
</tr>
+ @if(isset($result['Formula']))
<tr>
<td><strong>Formula</strong></td>
- <td>@if(isset($result['Formula']))<a href="#">{{$result['Formula']}}</a>@endif</td>
+ <td>{{$result['Formula']}}</td>
</tr>
+ @endif
</table>
</br>
<h3>Detailed Information</h3>
<table class="table table-bordered">
+ @if(isset($result['ParsedBy']))
<tr>
<td><strong>ParsedBy</strong></td>
- <td>@if(isset($result['ParsedBy'])){{$result['ParsedBy']}}@endif</td>
+ <td>{{$result['ParsedBy']}}</td>
</tr>
+ @endif
+ @if(isset($result['Charge']))
<tr>
<td><strong>Charge</strong></td>
- <td>@if(isset($result['Charge'])){{$result['Charge']}}@endif</td>
+ <td>{{$result['Charge']}}</td>
</tr>
+ @endif
+ @if(isset($result['Multiplicity']))
<tr>
<td><strong>Multiplicity</strong></td>
- <td>@if(isset($result['Multiplicity'])){{$result['Multiplicity']}}@endif</td>
+ <td>{{$result['Multiplicity']}}</td>
</tr>
+ @endif
+ @if(isset($result['Keywords']))
<tr>
<td><strong>Keywords</strong></td>
- <td>@if(isset($result['Keywords'])){{$result['Keywords']}}@endif</td>
+ <td>({{$result['Keywords']}}</td>
</tr>
+ @endif
+ @if(isset($result['CalcType']))
<tr>
<td><strong>CalcType</strong></td>
- <td>@if(isset($result['CalcType'])){{$result['CalcType']}}@endif</td>
+ <td>{{$result['CalcType']}}</td>
</tr>
+ @endif
+ @if(isset($result['Methods']))
<tr>
<td><strong>Methods</strong></td>
- <td>@if(isset($result['Methods'])){{$result['Methods']}}@endif</td>
+ <td>{{$result['Methods']}}</td>
</tr>
+ @endif
+ @if(isset($result['Basis']))
<tr>
<td><strong>Basis</strong></td>
- <td>@if(isset($result['Basis'])){{$result['Basis']}}@endif</td>
+ <td>{{$result['Basis']}}</td>
</tr>
+ @endif
+ @if(isset($result['NumBasis']))
<tr>
<td><strong>NumBasis</strong></td>
- <td>@if(isset($result['NumBasis'])){{$result['NumBasis']}}@endif</td>
+ <td>{{$result['NumBasis']}}</td>
</tr>
+ @endif
+ @if(isset($result['NumFC']))
<tr>
<td><strong>NumFC</strong></td>
- <td>@if(isset($result['NumFC'])){{$result['NumFC']}}@endif</td>
+ <td>{{$result['NumFC']}}</td>
</tr>
+ @endif
+ @if(isset($result['NumVirt']))
<tr>
<td><strong>NumVirt</strong></td>
- <td>@if(isset($result['NumVirt'])){{$result['NumVirt']}}@endif</td>
+ <td>{{$result['NumVirt']}}</td>
</tr>
+ @endif
+ @if(isset($result['JobStatus']))
<tr>
<td><strong>JobStatus</strong></td>
- <td>@if(isset($result['JobStatus'])){{$result['JobStatus']}}@endif</td>
+ <td>{{$result['JobStatus']}}</td>
</tr>
+ @endif
+ @if(isset($result['FinTime']))
<tr>
<td><strong>FinTime</strong></td>
- <td>@if(isset($result['FinTime'])){{$result['FinTime']}}@endif</td>
+ <td>{{$result['FinTime']}}</td>
</tr>
+ @endif
+ @if(isset($result['InitGeom']))
<tr>
<td><strong>InitGeom</strong></td>
- <td>@if(isset($result['InitGeom'])){{$result['InitGeom']}}@endif</td>
+ <td>{{$result['InitGeom']}}</td>
</tr>
+ @endif
+ @if(isset($result['FinalGeom']))
<tr>
<td><strong>FinalGeom</strong></td>
- <td>@if(isset($result['FinalGeom'])){{$result['FinalGeom']}}@endif</td>
+ <td>{{$result['FinalGeom']}}</td>
</tr>
+ @endif
+ @if(isset($result['PG']))
<tr>
<td><strong>PG</strong></td>
- <td>@if(isset($result['PG'])){{$result['PG']}}@endif</td>
+ <td>{{$result['PG']}}</td>
</tr>
+ @endif
+ @if(isset($result['ElecSym']))
<tr>
<td><strong>ElecSym</strong></td>
- <td>@if(isset($result['ElecSym'])){{$result['ElecSym']}}@endif</td>
+ <td>{{$result['ElecSym']}}</td>
</tr>
+ @endif
+ @if(isset($result['NImag']))
<tr>
<td><strong>NImag</strong></td>
- <td>@if(isset($result['NImag'])){{$result['NImag']}}@endif</td>
+ <td>{{$result['NImag']}}</td>
</tr>
+ @endif
+ @if(isset($result['Energy']))
<tr>
<td><strong>Energy</strong></td>
- <td>@if(isset($result['Energy'])){{$result['Energy']}}@endif</td>
+ <td>{{$result['Energy']}}</td>
</tr>
+ @endif
+ @if(isset($result['EnergyKcal']))
<tr>
<td><strong>EnergyKcal</strong></td>
- <td>@if(isset($result['EnergyKcal'])){{$result['EnergyKcal']}}@endif</td>
+ <td>{{$result['EnergyKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['ZPE']))
<tr>
<td><strong>ZPE</strong></td>
- <td>@if(isset($result['ZPE'])){{$result['ZPE']}}@endif</td>
+ <td>{{$result['ZPE']}}</td>
</tr>
+ @endif
+ @if(isset($result['ZPEKcal']))
<tr>
<td><strong>ZPEKcal</strong></td>
- <td>@if(isset($result['ZPEKcal'])){{$result['ZPEKcal']}}@endif</td>
+ <td>{{$result['ZPEKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['HF']))
<tr>
<td><strong>HF</strong></td>
- <td>@if(isset($result['HF'])){{$result['HF']}}@endif</td>
+ <td>{{$result['HF']}}</td>
</tr>
+ @endif
+ @if(isset($result['HFKcal']))
<tr>
<td><strong>HFKcal</strong></td>
- <td>@if(isset($result['HFKcal'])){{$result['HFKcal']}}@endif</td>
+ <td>{{$result['HFKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['Thermal']))
<tr>
<td><strong>Thermal</strong></td>
- <td>@if(isset($result['Thermal'])){{$result['Thermal']}}@endif</td>
+ <td>{{$result['Thermal']}}</td>
</tr>
+ @endif
+ @if(isset($result['ThermalKcal']))
<tr>
<td><strong>ThermalKcal</strong></td>
- <td>@if(isset($result['ThermalKcal'])){{$result['ThermalKcal']}}@endif</td>
+ <td>{{$result['ThermalKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['Enthalpy']))
<tr>
<td><strong>Enthalpy</strong></td>
- <td>@if(isset($result['Enthalpy'])){{$result['Enthalpy']}}@endif</td>
+ <td>{{$result['Enthalpy']}}</td>
</tr>
+ @endif
+ @if(isset($result['EnthalpyKcal']))
<tr>
<td><strong>EnthalpyKcal</strong></td>
- <td>@if(isset($result['EnthalpyKcal'])){{$result['EnthalpyKcal']}}@endif</td>
+ <td>{{$result['EnthalpyKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['Entropy']))
<tr>
<td><strong>Entropy</strong></td>
- <td>@if(isset($result['Entropy'])){{$result['Entropy']}}@endif</td>
+ <td>{{$result['Entropy']}}</td>
</tr>
+ @endif
+ @if(isset($result['EntropyKcal']))
<tr>
<td><strong>EntropyKcal</strong></td>
- <td>@if(isset($result['EntropyKcal'])){{$result['EntropyKcal']}}@endif</td>
+ <td>{{$result['EntropyKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['Gibbs']))
<tr>
<td><strong>Gibbs</strong></td>
- <td>@if(isset($result['Gibbs'])){{$result['Gibbs']}}@endif</td>
+ <td>{{$result['Gibbs']}}</td>
</tr>
+ @endif
+ @if(isset($result['GibbsKcal']))
<tr>
<td><strong>GibbsKcal</strong></td>
- <td>@if(isset($result['GibbsKcal'])){{$result['GibbsKcal']}}@endif</td>
+ <td>{{$result['GibbsKcal']}}</td>
</tr>
+ @endif
+ @if(isset($result['OrbSym']))
<tr>
<td><strong>OrbSym</strong></td>
- <td>@if(isset($result['OrbSym'])){{$result['OrbSym']}}@endif</td>
+ <td>{{$result['OrbSym']}}</td>
</tr>
+ @endif
+ @if(isset($result['Dipole']))
<tr>
<td><strong>Dipole</strong></td>
- <td>@if(isset($result['Dipole'])){{$result['Dipole']}}@endif</td>
+ <td>{{$result['Dipole']}}</td>
</tr>
+ @endif
+ @if(isset($result['Freq']))
<tr>
<td><strong>Freq</strong></td>
- <td>@if(isset($result['Freq'])){{$result['Freq']}}@endif</td>
+ <td>{{$result['Freq']}}</td>
</tr>
+ @endif
+ @if(isset($result['AtomWeigh']))
<tr>
<td><strong>AtomWeigh</strong></td>
- <td>@if(isset($result['AtomWeigh'])){{$result['AtomWeigh']}}@endif</td>
+ <td>{{$result['AtomWeigh']}}</td>
</tr>
+ @endif
+ @if(isset($result['Conditions']))
<tr>
<td><strong>Conditions</strong></td>
- <td>@if(isset($result['Conditions'])){{$result['Conditions']}}@endif</td>
+ <td>{{$result['Conditions']}}</td>
</tr>
+ @endif
+ @if(isset($result['ReacGeom']))
<tr>
<td><strong>ReacGeom</strong></td>
- <td>@if(isset($result['ReacGeom'])){{$result['ReacGeom']}}@endif</td>
+ <td>{{$result['ReacGeom']}}</td>
</tr>
+ @endif
+ @if(isset($result['ProdGeom']))
<tr>
<td><strong>ProdGeom</strong></td>
- <td>@if(isset($result['ProdGeom'])){{$result['ProdGeom']}}@endif</td>
+ <td>{{$result['ProdGeom']}}</td>
</tr>
+ @endif
+ @if(isset($result['MulCharge']))
<tr>
<td><strong>MulCharge</strong></td>
- <td>@if(isset($result['MulCharge'])){{$result['MulCharge']}}@endif</td>
+ <td>{{$result['MulCharge']}}</td>
</tr>
+ @endif
+ @if(isset($result['NatCharge']))
<tr>
<td><strong>NatCharge</strong></td>
- <td>@if(isset($result['NatCharge'])){{$result['NatCharge']}}@endif</td>
+ <td>{{$result['NatCharge']}}</td>
</tr>
+ @endif
+ @if(isset($result['S2']))
<tr>
<td><strong>S2</strong></td>
- <td>@if(isset($result['S2'])){{$result['S2']}}@endif</td>
+ <td>{{$result['S2']}}</td>
</tr>
+ @endif
+ @if(isset($result['CodeVersion']))
<tr>
<td><strong>CodeVersion</strong></td>
- <td>@if(isset($result['CodeVersion'])){{$result['CodeVersion']}}@endif</td>
+ <td>{{$result['CodeVersion']}}</td>
</tr>
+ @endif
+ @if(isset($result['CalcMachine']))
<tr>
<td><strong>CalcMachine</strong></td>
- <td>@if(isset($result['CalcMachine'])){{$result['CalcMachine']}}@endif</td>
+ <td>{{$result['CalcMachine']}}</td>
</tr>
+ @endif
+ @if(isset($result['CalcBy']))
<tr>
<td><strong>CalcBy</strong></td>
- <td>@if(isset($result['CalcBy'])){{$result['CalcBy']}}@endif</td>
+ <td>{{$result['CalcBy']}}</td>
</tr>
+ @endif
+ @if(isset($result['MemCost']))
<tr>
<td><strong>MemCost</strong></td>
- <td>@if(isset($result['MemCost'])){{$result['MemCost']}}@endif</td>
+ <td>{{$result['MemCost']}}</td>
</tr>
+ @endif
+ @if(isset($result['TimeCost']))
<tr>
<td><strong>TimeCost</strong></td>
- <td>@if(isset($result['TimeCost'])){{$result['TimeCost']}}@endif</td>
+ <td>{{$result['TimeCost']}}</td>
</tr>
+ @endif
+ @if(isset($result['CPUTime']))
<tr>
<td><strong>CPUTime</strong></td>
- <td>@if(isset($result['CPUTime'])){{$result['CPUTime']}}@endif</td>
+ <td>{{$result['CPUTime']}}</td>
</tr>
+ @endif
+ @if(isset($result['Convergence']))
<tr>
<td><strong>Convergence</strong></td>
- <td>@if(isset($result['Convergence'])){{$result['Convergence']}}@endif</td>
+ <td>{{$result['Convergence']}}</td>
</tr>
+ @endif
+ @if(isset($result['FullPath']))
<tr>
<td><strong>FullPath</strong></td>
- <td>@if(isset($result['FullPath'])){{$result['FullPath']}}@endif</td>
+ <td>{{$result['FullPath']}}</td>
</tr>
+ @endif
+ @if(isset($result['InputButGeom']))
<tr>
<td><strong>InputButGeom</strong></td>
- <td>@if(isset($result['InputButGeom'])){{$result['InputButGeom']}}@endif</td>
+ <td>{{$result['InputButGeom']}}</td>
</tr>
+ @endif
+ @if(isset($result['OtherInfo']))
<tr>
<td><strong>OtherInfo</strong></td>
- <td>@if(isset($result['OtherInfo'])){{$result['OtherInfo']}}@endif</td>
+ <td>{{$result['OtherInfo']}}</td>
</tr>
+ @endif
+ @if(isset($result['Comments']))
<tr>
<td><strong>Comments</strong></td>
- <td>@if(isset($result['Comments'])){{$result['Comments']}}@endif</td>
+ <td>{{$result['Comments']}}</td>
</tr>
+ @endif
+ @if(isset($result['NAtom']))
<tr>
<td><strong>NAtom</strong></td>
- <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
+ <td>{{$result['NAtom']}}</td>
</tr>
+ @endif
+ @if(isset($result['Nmo']))
<tr>
<td><strong>Nmo</strong></td>
- <td>@if(isset($result['Nmo'])){{$result['Nmo']}}@endif</td>
+ <td>{{$result['Nmo']}}</td>
</tr>
+ @endif
+ @if(isset($result['NBasis']))
<tr>
<td><strong>NBasis</strong></td>
- <td>@if(isset($result['NBasis'])){{$result['NBasis']}}@endif</td>
+ <td>{{$result['NBasis']}}</td>
</tr>
+ @endif
+ @if(isset($result['AtomNos']))
<tr>
<td><strong>AtomNos</strong></td>
- <td>@if(isset($result['AtomNos'])){{json_encode($result['AtomNos'], JSON_PRETTY_PRINT)}}@endif</td>
- </tr>
- <tr>
- <td><strong>NAtom</strong></td>
- <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
- </tr>
- <tr>
- <td><strong>NAtom</strong></td>
- <td>@if(isset($result['NAtom'])){{$result['NAtom']}}@endif</td>
+ <td>{{json_encode($result['AtomNos'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
+ @if(isset($result['Homos']))
<tr>
<td><strong>Homos</strong></td>
- <td>@if(isset($result['Homos'])){{json_encode($result['Homos'])}}@endif</td>
+ <td>{{json_encode($result['Homos'])}}</td>
</tr>
+ @endif
+ @if(isset($result['ScfEnergies']))
<tr>
<td><strong>ScfEnerfgies</strong></td>
- <td>@if(isset($result['ScfEnergies'])){{json_encode($result['ScfEnergies'], JSON_PRETTY_PRINT)}}@endif</td>
+ <td>{{json_encode($result['ScfEnergies'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
+ @if(isset($result['CoreElectrons']))
<tr>
<td><strong>CoreElectrons</strong></td>
- <td>@if(isset($result['CoreElectrons'])){{json_encode($result['CoreElectrons'], JSON_PRETTY_PRINT)}}@endif</td>
+ <td>{{json_encode($result['CoreElectrons'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
+ @if(isset($result['MoEnergies']))
<tr>
<td><strong>MoEnergies</strong></td>
- <td>@if(isset($result['MoEnergies'])){{json_encode($result['MoEnergies'], JSON_PRETTY_PRINT)}}@endif</td>
+ <td>{{json_encode($result['MoEnergies'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
+ @if(isset($result['AtomCoords']))
<tr>
<td><strong>AtomCoords</strong></td>
- <td>@if(isset($result['AtomCoords'])){{json_encode($result['AtomCoords'], JSON_PRETTY_PRINT)}}@endif</td>
+ <td>{{json_encode($result['AtomCoords'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
+ @if(isset($result['ScfTargets']))
<tr>
<td><strong>ScfTargets</strong></td>
- <td>@if(isset($result['ScfTargets'])){{json_encode($result['ScfTargets'], JSON_PRETTY_PRINT)}}@endif</td>
+ <td>{{json_encode($result['ScfTargets'], JSON_PRETTY_PRINT)}}</td>
</tr>
+ @endif
</table>
@endif
</div>
[8/8] airavata-php-gateway git commit: fixing admin readonly not
working issues
Posted by sc...@apache.org.
fixing admin readonly not working issues
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9c8eb1fd
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9c8eb1fd
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/9c8eb1fd
Branch: refs/heads/develop
Commit: 9c8eb1fd7d4113b625c2e06d9746b8c6e3ff17dd
Parents: 94f291d
Author: scnakandala <su...@gmail.com>
Authored: Wed Feb 3 08:50:15 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Wed Feb 3 08:50:15 2016 -0500
----------------------------------------------------------------------
app/controllers/AccountController.php | 2 +-
app/filters.php | 2 +-
app/libraries/Wsis/Wsis.php | 5 ++---
app/views/account/dashboard.blade.php | 10 +++++-----
app/views/admin/manage-credentials.blade.php | 4 ++++
5 files changed, 13 insertions(+), 10 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9c8eb1fd/app/controllers/AccountController.php
----------------------------------------------------------------------
diff --git a/app/controllers/AccountController.php b/app/controllers/AccountController.php
index a213870..a8ac349 100755
--- a/app/controllers/AccountController.php
+++ b/app/controllers/AccountController.php
@@ -144,7 +144,7 @@ class AccountController extends BaseController
}
//only for super admin
- if( Config::get('pga_config.portal')['super-admin-portal'] == true){
+ if( Config::get('pga_config.portal')['super-admin-portal'] == true && Session::has("admin")){
Session::put("super-admin", true);
}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9c8eb1fd/app/filters.php
----------------------------------------------------------------------
diff --git a/app/filters.php b/app/filters.php
index 5926e7d..638be33 100755
--- a/app/filters.php
+++ b/app/filters.php
@@ -120,7 +120,7 @@ Route::filter('verifyauthorizeduser', function () {
Route::filter('verifyadmin', function () {
if (CommonUtilities::verify_login()) {
- if (!(Session::has("admin") || Session::has("admin-read-only"))) {
+ if (!Session::has("admin") && !Session::has("admin-read-only")) {
return Redirect::to("home")->with("admin-alert", true);
}
} else
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9c8eb1fd/app/libraries/Wsis/Wsis.php
----------------------------------------------------------------------
diff --git a/app/libraries/Wsis/Wsis.php b/app/libraries/Wsis/Wsis.php
index b62b254..aa40bda 100755
--- a/app/libraries/Wsis/Wsis.php
+++ b/app/libraries/Wsis/Wsis.php
@@ -278,8 +278,6 @@ class Wsis {
try {
$this->userStoreManager->deleteRole($roleName);
} catch (Exception $ex) {
- var_dump( $ex); exit;
-
throw new Exception("Unable to delete role", 0, $ex);
}
}
@@ -310,7 +308,8 @@ class Wsis {
*/
public function getUserRoles( $username){
try {
- return $this->userStoreManager->getRoleListOfUser( $username);
+ $roles = $this->userStoreManager->getRoleListOfUser( $username);
+ return array_filter($roles, "Wsis::nonInternalRoles");
} catch (Exception $ex) {
throw new Exception("Unable to get User roles.", 0, $ex);
}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9c8eb1fd/app/views/account/dashboard.blade.php
----------------------------------------------------------------------
diff --git a/app/views/account/dashboard.blade.php b/app/views/account/dashboard.blade.php
index 2de5b68..c210d2c 100644
--- a/app/views/account/dashboard.blade.php
+++ b/app/views/account/dashboard.blade.php
@@ -19,7 +19,7 @@
{{ Session::forget("message") }}
@endif
- @if( Session::has('authorized-user') || Session::has('admin') )
+ @if( Session::has('authorized-user') || Session::has('admin') || Session::has('admin-read-only') )
<div class="row text-center breathing-space">
<h1>Let's get started!</h1>
</div>
@@ -30,7 +30,7 @@
<h3>See what's happening in your projects</h3>
<a href="{{URL::to('/')}}/project/browse">
- <div class="@if( Session::has('admin')) col-md-4 @else col-md-6 @endif well">
+ <div class="@if( Session::has('admin') || Session::has('admin-read-only')) col-md-4 @else col-md-6 @endif well">
<div class="col-md-12">
<span class="glyphicon glyphicon-off console-icon"></span>
</div>
@@ -41,7 +41,7 @@
</a>
<a href="{{URL::to('/')}}/experiment/browse">
- <div class="@if( Session::has('admin')) col-md-4 @else col-md-6 @endif well">
+ <div class="@if( Session::has('admin') || Session::has('admin-read-only')) col-md-4 @else col-md-6 @endif well">
<div class="col-md-12">
<span class="glyphicon glyphicon-tasks console-icon"></span>
</div>
@@ -51,7 +51,7 @@
</div>
</a>
- @if( Session::has('admin'))
+ @if( Session::has('admin') || Session::has('admin-read-only'))
<a href="{{URL::to('/')}}/admin/dashboard/experiments">
<div class="col-md-4 well">
<div class="col-md-12">
@@ -65,7 +65,7 @@
@endif
</div>
- @if( Session::has('admin'))
+ @if( Session::has('admin') || Session::has('admin-read-only'))
<div class="row well">
<h3>Manage Users Access</h3>
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/9c8eb1fd/app/views/admin/manage-credentials.blade.php
----------------------------------------------------------------------
diff --git a/app/views/admin/manage-credentials.blade.php b/app/views/admin/manage-credentials.blade.php
index 14708c4..16b2a34 100644
--- a/app/views/admin/manage-credentials.blade.php
+++ b/app/views/admin/manage-credentials.blade.php
@@ -44,7 +44,9 @@
Token
</th>
<th class="text-center">Public Key</th>
+ @if( Session::has("admin"))
<th>Delete</th>
+ @endif
</tr>
<tbody class="token-values">
@foreach( $tokens as $token => $publicKey)
@@ -55,9 +57,11 @@
<td class="public-key">
{{ $publicKey }}
</td>
+ @if( Session::has("admin"))
<td>
<span data-token="{{$token}}" class="glyphicon glyphicon-trash remove-token"></span>
</td>
+ @endif
</tr>
@endforeach
</tbody>
[7/8] airavata-php-gateway git commit: Merge branch 'develop' of
https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop
Posted by sc...@apache.org.
Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/94f291d1
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/94f291d1
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/94f291d1
Branch: refs/heads/develop
Commit: 94f291d101301bec056e50b04ecfba7ddfcdc3a6
Parents: 9af720f f77cd6f
Author: scnakandala <su...@gmail.com>
Authored: Wed Feb 3 08:16:11 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Wed Feb 3 08:16:11 2016 -0500
----------------------------------------------------------------------
app/controllers/AdminController.php | 163 ++++++----
app/controllers/ApplicationController.php | 35 ++-
app/controllers/ExperimentController.php | 5 +
app/controllers/GatewayprofileController.php | 8 +-
app/controllers/ResourceController.php | 211 -------------
app/controllers/StorageResourceController.php | 5 +-
app/libraries/AppUtilities.php | 23 ++
app/libraries/CRUtilities.php | 17 +-
app/libraries/ExperimentUtilities.php | 24 +-
app/libraries/SRUtilities.php | 12 +-
app/routes.php | 6 +-
app/views/account/dashboard.blade.php | 2 +-
app/views/admin/manage-experiments.blade.php | 8 +-
app/views/admin/manage-gateway.blade.php | 310 ++++---------------
app/views/admin/manage-roles.blade.php | 48 ++-
app/views/experiment/summary.blade.php | 2 +-
app/views/gateway/browse.blade.php | 2 +-
.../compute-resource-preferences.blade.php | 16 +-
app/views/partials/experiment-info.blade.php | 51 ++-
.../gateway-preferences-block.blade.php | 249 +++++++++++++++
.../storage-resource-preferences.blade.php | 16 +-
public/css/admin.css | 4 +-
public/css/bootstrap.min.css | 2 +-
public/js/gateway.js | 3 +-
24 files changed, 595 insertions(+), 627 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/94f291d1/app/routes.php
----------------------------------------------------------------------
[2/8] airavata-php-gateway git commit: adding datacat web browser
initial files
Posted by sc...@apache.org.
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/public/js/datacat/Three.js
----------------------------------------------------------------------
diff --git a/public/js/datacat/Three.js b/public/js/datacat/Three.js
new file mode 100644
index 0000000..01abdec
--- /dev/null
+++ b/public/js/datacat/Three.js
@@ -0,0 +1,382 @@
+// Three.js - http://github.com/mrdoob/three.js
+'use strict';var THREE=THREE||{REVISION:"49"};self.Int32Array||(self.Int32Array=Array,self.Float32Array=Array);
+(function(){for(var a=0,b=["ms","moz","webkit","o"],c=0;c<b.length&&!window.requestAnimationFrame;++c){window.requestAnimationFrame=window[b[c]+"RequestAnimationFrame"];window.cancelAnimationFrame=window[b[c]+"CancelAnimationFrame"]||window[b[c]+"CancelRequestAnimationFrame"]}if(!window.requestAnimationFrame)window.requestAnimationFrame=function(b){var c=Date.now(),f=Math.max(0,16-(c-a)),h=window.setTimeout(function(){b(c+f)},f);a=c+f;return h};if(!window.cancelAnimationFrame)window.cancelAnimationFrame=
+function(a){clearTimeout(a)}})();THREE.Clock=function(a){this.autoStart=a!==void 0?a:true;this.elapsedTime=this.oldTime=this.startTime=0;this.running=false};THREE.Clock.prototype.start=function(){this.oldTime=this.startTime=Date.now();this.running=true};THREE.Clock.prototype.stop=function(){this.getElapsedTime();this.running=false};THREE.Clock.prototype.getElapsedTime=function(){return this.elapsedTime=this.elapsedTime+this.getDelta()};
+THREE.Clock.prototype.getDelta=function(){var a=0;this.autoStart&&!this.running&&this.start();if(this.running){var b=Date.now(),a=0.001*(b-this.oldTime);this.oldTime=b;this.elapsedTime=this.elapsedTime+a}return a};THREE.Color=function(a){a!==void 0&&this.setHex(a);return this};
+THREE.Color.prototype={constructor:THREE.Color,r:1,g:1,b:1,copy:function(a){this.r=a.r;this.g=a.g;this.b=a.b;return this},copyGammaToLinear:function(a){this.r=a.r*a.r;this.g=a.g*a.g;this.b=a.b*a.b;return this},copyLinearToGamma:function(a){this.r=Math.sqrt(a.r);this.g=Math.sqrt(a.g);this.b=Math.sqrt(a.b);return this},convertGammaToLinear:function(){var a=this.r,b=this.g,c=this.b;this.r=a*a;this.g=b*b;this.b=c*c;return this},convertLinearToGamma:function(){this.r=Math.sqrt(this.r);this.g=Math.sqrt(this.g);
+this.b=Math.sqrt(this.b);return this},setRGB:function(a,b,c){this.r=a;this.g=b;this.b=c;return this},setHSV:function(a,b,c){var d,e,f;if(c===0)this.r=this.g=this.b=0;else{d=Math.floor(a*6);e=a*6-d;a=c*(1-b);f=c*(1-b*e);b=c*(1-b*(1-e));switch(d){case 1:this.r=f;this.g=c;this.b=a;break;case 2:this.r=a;this.g=c;this.b=b;break;case 3:this.r=a;this.g=f;this.b=c;break;case 4:this.r=b;this.g=a;this.b=c;break;case 5:this.r=c;this.g=a;this.b=f;break;case 6:case 0:this.r=c;this.g=b;this.b=a}}return this},setHex:function(a){a=
+Math.floor(a);this.r=(a>>16&255)/255;this.g=(a>>8&255)/255;this.b=(a&255)/255;return this},lerpSelf:function(a,b){this.r=this.r+(a.r-this.r)*b;this.g=this.g+(a.g-this.g)*b;this.b=this.b+(a.b-this.b)*b;return this},getHex:function(){return Math.floor(this.r*255)<<16^Math.floor(this.g*255)<<8^Math.floor(this.b*255)},getContextStyle:function(){return"rgb("+Math.floor(this.r*255)+","+Math.floor(this.g*255)+","+Math.floor(this.b*255)+")"},clone:function(){return(new THREE.Color).setRGB(this.r,this.g,this.b)}};
+THREE.Vector2=function(a,b){this.x=a||0;this.y=b||0};
+THREE.Vector2.prototype={constructor:THREE.Vector2,set:function(a,b){this.x=a;this.y=b;return this},copy:function(a){this.x=a.x;this.y=a.y;return this},add:function(a,b){this.x=a.x+b.x;this.y=a.y+b.y;return this},addSelf:function(a){this.x=this.x+a.x;this.y=this.y+a.y;return this},sub:function(a,b){this.x=a.x-b.x;this.y=a.y-b.y;return this},subSelf:function(a){this.x=this.x-a.x;this.y=this.y-a.y;return this},multiplyScalar:function(a){this.x=this.x*a;this.y=this.y*a;return this},divideScalar:function(a){if(a){this.x=
+this.x/a;this.y=this.y/a}else this.set(0,0);return this},negate:function(){return this.multiplyScalar(-1)},dot:function(a){return this.x*a.x+this.y*a.y},lengthSq:function(){return this.x*this.x+this.y*this.y},length:function(){return Math.sqrt(this.lengthSq())},normalize:function(){return this.divideScalar(this.length())},distanceTo:function(a){return Math.sqrt(this.distanceToSquared(a))},distanceToSquared:function(a){var b=this.x-a.x,a=this.y-a.y;return b*b+a*a},setLength:function(a){return this.normalize().multiplyScalar(a)},
+lerpSelf:function(a,b){this.x=this.x+(a.x-this.x)*b;this.y=this.y+(a.y-this.y)*b;return this},equals:function(a){return a.x===this.x&&a.y===this.y},isZero:function(){return this.lengthSq()<1.0E-4},clone:function(){return new THREE.Vector2(this.x,this.y)}};THREE.Vector3=function(a,b,c){this.x=a||0;this.y=b||0;this.z=c||0};
+THREE.Vector3.prototype={constructor:THREE.Vector3,set:function(a,b,c){this.x=a;this.y=b;this.z=c;return this},setX:function(a){this.x=a;return this},setY:function(a){this.y=a;return this},setZ:function(a){this.z=a;return this},copy:function(a){this.x=a.x;this.y=a.y;this.z=a.z;return this},add:function(a,b){this.x=a.x+b.x;this.y=a.y+b.y;this.z=a.z+b.z;return this},addSelf:function(a){this.x=this.x+a.x;this.y=this.y+a.y;this.z=this.z+a.z;return this},addScalar:function(a){this.x=this.x+a;this.y=this.y+
+a;this.z=this.z+a;return this},sub:function(a,b){this.x=a.x-b.x;this.y=a.y-b.y;this.z=a.z-b.z;return this},subSelf:function(a){this.x=this.x-a.x;this.y=this.y-a.y;this.z=this.z-a.z;return this},multiply:function(a,b){this.x=a.x*b.x;this.y=a.y*b.y;this.z=a.z*b.z;return this},multiplySelf:function(a){this.x=this.x*a.x;this.y=this.y*a.y;this.z=this.z*a.z;return this},multiplyScalar:function(a){this.x=this.x*a;this.y=this.y*a;this.z=this.z*a;return this},divideSelf:function(a){this.x=this.x/a.x;this.y=
+this.y/a.y;this.z=this.z/a.z;return this},divideScalar:function(a){if(a){this.x=this.x/a;this.y=this.y/a;this.z=this.z/a}else this.z=this.y=this.x=0;return this},negate:function(){return this.multiplyScalar(-1)},dot:function(a){return this.x*a.x+this.y*a.y+this.z*a.z},lengthSq:function(){return this.x*this.x+this.y*this.y+this.z*this.z},length:function(){return Math.sqrt(this.lengthSq())},lengthManhattan:function(){return Math.abs(this.x)+Math.abs(this.y)+Math.abs(this.z)},normalize:function(){return this.divideScalar(this.length())},
+setLength:function(a){return this.normalize().multiplyScalar(a)},lerpSelf:function(a,b){this.x=this.x+(a.x-this.x)*b;this.y=this.y+(a.y-this.y)*b;this.z=this.z+(a.z-this.z)*b;return this},cross:function(a,b){this.x=a.y*b.z-a.z*b.y;this.y=a.z*b.x-a.x*b.z;this.z=a.x*b.y-a.y*b.x;return this},crossSelf:function(a){var b=this.x,c=this.y,d=this.z;this.x=c*a.z-d*a.y;this.y=d*a.x-b*a.z;this.z=b*a.y-c*a.x;return this},distanceTo:function(a){return Math.sqrt(this.distanceToSquared(a))},distanceToSquared:function(a){return(new THREE.Vector3).sub(this,
+a).lengthSq()},getPositionFromMatrix:function(a){this.x=a.elements[12];this.y=a.elements[13];this.z=a.elements[14];return this},getRotationFromMatrix:function(a,b){var c=b?b.x:1,d=b?b.y:1,e=b?b.z:1,f=a.elements[0]/c,h=a.elements[4]/d,c=a.elements[1]/c,d=a.elements[5]/d,i=a.elements[9]/e,l=a.elements[10]/e;this.y=Math.asin(a.elements[8]/e);e=Math.cos(this.y);if(Math.abs(e)>1.0E-5){this.x=Math.atan2(-i/e,l/e);this.z=Math.atan2(-h/e,f/e)}else{this.x=0;this.z=Math.atan2(c,d)}return this},getScaleFromMatrix:function(a){var b=
+this.set(a.elements[0],a.elements[1],a.elements[2]).length(),c=this.set(a.elements[4],a.elements[5],a.elements[6]).length(),a=this.set(a.elements[8],a.elements[9],a.elements[10]).length();this.x=b;this.y=c;this.z=a},equals:function(a){return a.x===this.x&&a.y===this.y&&a.z===this.z},isZero:function(){return this.lengthSq()<1.0E-4},clone:function(){return new THREE.Vector3(this.x,this.y,this.z)}};THREE.Vector4=function(a,b,c,d){this.x=a||0;this.y=b||0;this.z=c||0;this.w=d!==void 0?d:1};
+THREE.Vector4.prototype={constructor:THREE.Vector4,set:function(a,b,c,d){this.x=a;this.y=b;this.z=c;this.w=d;return this},copy:function(a){this.x=a.x;this.y=a.y;this.z=a.z;this.w=a.w!==void 0?a.w:1;return this},add:function(a,b){this.x=a.x+b.x;this.y=a.y+b.y;this.z=a.z+b.z;this.w=a.w+b.w;return this},addSelf:function(a){this.x=this.x+a.x;this.y=this.y+a.y;this.z=this.z+a.z;this.w=this.w+a.w;return this},sub:function(a,b){this.x=a.x-b.x;this.y=a.y-b.y;this.z=a.z-b.z;this.w=a.w-b.w;return this},subSelf:function(a){this.x=
+this.x-a.x;this.y=this.y-a.y;this.z=this.z-a.z;this.w=this.w-a.w;return this},multiplyScalar:function(a){this.x=this.x*a;this.y=this.y*a;this.z=this.z*a;this.w=this.w*a;return this},divideScalar:function(a){if(a){this.x=this.x/a;this.y=this.y/a;this.z=this.z/a;this.w=this.w/a}else{this.z=this.y=this.x=0;this.w=1}return this},negate:function(){return this.multiplyScalar(-1)},dot:function(a){return this.x*a.x+this.y*a.y+this.z*a.z+this.w*a.w},lengthSq:function(){return this.dot(this)},length:function(){return Math.sqrt(this.lengthSq())},
+normalize:function(){return this.divideScalar(this.length())},setLength:function(a){return this.normalize().multiplyScalar(a)},lerpSelf:function(a,b){this.x=this.x+(a.x-this.x)*b;this.y=this.y+(a.y-this.y)*b;this.z=this.z+(a.z-this.z)*b;this.w=this.w+(a.w-this.w)*b;return this},clone:function(){return new THREE.Vector4(this.x,this.y,this.z,this.w)}};THREE.Frustum=function(){this.planes=[new THREE.Vector4,new THREE.Vector4,new THREE.Vector4,new THREE.Vector4,new THREE.Vector4,new THREE.Vector4]};
+THREE.Frustum.prototype.setFromMatrix=function(a){var b,c=this.planes,d=a.elements,a=d[0];b=d[1];var e=d[2],f=d[3],h=d[4],i=d[5],l=d[6],k=d[7],j=d[8],m=d[9],n=d[10],o=d[11],s=d[12],p=d[13],q=d[14],d=d[15];c[0].set(f-a,k-h,o-j,d-s);c[1].set(f+a,k+h,o+j,d+s);c[2].set(f+b,k+i,o+m,d+p);c[3].set(f-b,k-i,o-m,d-p);c[4].set(f-e,k-l,o-n,d-q);c[5].set(f+e,k+l,o+n,d+q);for(a=0;a<6;a++){b=c[a];b.divideScalar(Math.sqrt(b.x*b.x+b.y*b.y+b.z*b.z))}};
+THREE.Frustum.prototype.contains=function(a){for(var b=this.planes,c=a.matrixWorld,d=c.elements,c=-a.geometry.boundingSphere.radius*c.getMaxScaleOnAxis(),e=0;e<6;e++){a=b[e].x*d[12]+b[e].y*d[13]+b[e].z*d[14]+b[e].w;if(a<=c)return false}return true};THREE.Frustum.__v1=new THREE.Vector3;
+THREE.Ray=function(a,b){function c(a,b,c){s.sub(c,a);w=s.dot(b);A=p.add(a,q.copy(b).multiplyScalar(w));return y=c.distanceTo(A)}function d(a,b,c,d){s.sub(d,b);p.sub(c,b);q.sub(a,b);u=s.dot(s);H=s.dot(p);B=s.dot(q);K=p.dot(p);N=p.dot(q);Y=1/(u*K-H*H);ca=(K*B-H*N)*Y;I=(u*N-H*B)*Y;return ca>=0&&I>=0&&ca+I<1}this.origin=a||new THREE.Vector3;this.direction=b||new THREE.Vector3;var e=1.0E-4;this.setPrecision=function(a){e=a};var f=new THREE.Vector3,h=new THREE.Vector3,i=new THREE.Vector3,l=new THREE.Vector3,
+k=new THREE.Vector3,j=new THREE.Vector3,m=new THREE.Vector3,n=new THREE.Vector3,o=new THREE.Vector3;this.intersectObject=function(a){var b,s=[];if(a instanceof THREE.Particle){var p=c(this.origin,this.direction,a.matrixWorld.getPosition());if(p>a.scale.x)return[];b={distance:p,point:a.position,face:null,object:a};s.push(b)}else if(a instanceof THREE.Mesh){var p=c(this.origin,this.direction,a.matrixWorld.getPosition()),g=THREE.Frustum.__v1.set(a.matrixWorld.getColumnX().length(),a.matrixWorld.getColumnY().length(),
+a.matrixWorld.getColumnZ().length());if(p>a.geometry.boundingSphere.radius*Math.max(g.x,Math.max(g.y,g.z)))return s;var q,u,y=a.geometry,w=y.vertices,A;a.matrixRotationWorld.extractRotation(a.matrixWorld);p=0;for(g=y.faces.length;p<g;p++){b=y.faces[p];k.copy(this.origin);j.copy(this.direction);A=a.matrixWorld;m=A.multiplyVector3(m.copy(b.centroid)).subSelf(k);n=a.matrixRotationWorld.multiplyVector3(n.copy(b.normal));q=j.dot(n);if(!(Math.abs(q)<e)){u=n.dot(m)/q;if(!(u<0)&&(a.doubleSided||(a.flipSided?
+q>0:q<0))){o.add(k,j.multiplyScalar(u));if(b instanceof THREE.Face3){f=A.multiplyVector3(f.copy(w[b.a]));h=A.multiplyVector3(h.copy(w[b.b]));i=A.multiplyVector3(i.copy(w[b.c]));if(d(o,f,h,i)){b={distance:k.distanceTo(o),point:o.clone(),face:b,object:a};s.push(b)}}else if(b instanceof THREE.Face4){f=A.multiplyVector3(f.copy(w[b.a]));h=A.multiplyVector3(h.copy(w[b.b]));i=A.multiplyVector3(i.copy(w[b.c]));l=A.multiplyVector3(l.copy(w[b.d]));if(d(o,f,h,l)||d(o,h,i,l)){b={distance:k.distanceTo(o),point:o.clone(),
+face:b,object:a};s.push(b)}}}}}}return s};this.intersectObjects=function(a){for(var b=[],c=0,d=a.length;c<d;c++)Array.prototype.push.apply(b,this.intersectObject(a[c]));b.sort(function(a,b){return a.distance-b.distance});return b};var s=new THREE.Vector3,p=new THREE.Vector3,q=new THREE.Vector3,w,A,y,u,H,B,K,N,Y,ca,I};
+THREE.Rectangle=function(){function a(){f=d-b;h=e-c}var b,c,d,e,f,h,i=true;this.getX=function(){return b};this.getY=function(){return c};this.getWidth=function(){return f};this.getHeight=function(){return h};this.getLeft=function(){return b};this.getTop=function(){return c};this.getRight=function(){return d};this.getBottom=function(){return e};this.set=function(f,h,j,m){i=false;b=f;c=h;d=j;e=m;a()};this.addPoint=function(f,h){if(i){i=false;b=f;c=h;d=f;e=h}else{b=b<f?b:f;c=c<h?c:h;d=d>f?d:f;e=e>h?
+e:h}a()};this.add3Points=function(f,h,j,m,n,o){if(i){i=false;b=f<j?f<n?f:n:j<n?j:n;c=h<m?h<o?h:o:m<o?m:o;d=f>j?f>n?f:n:j>n?j:n;e=h>m?h>o?h:o:m>o?m:o}else{b=f<j?f<n?f<b?f:b:n<b?n:b:j<n?j<b?j:b:n<b?n:b;c=h<m?h<o?h<c?h:c:o<c?o:c:m<o?m<c?m:c:o<c?o:c;d=f>j?f>n?f>d?f:d:n>d?n:d:j>n?j>d?j:d:n>d?n:d;e=h>m?h>o?h>e?h:e:o>e?o:e:m>o?m>e?m:e:o>e?o:e}a()};this.addRectangle=function(f){if(i){i=false;b=f.getLeft();c=f.getTop();d=f.getRight();e=f.getBottom()}else{b=b<f.getLeft()?b:f.getLeft();c=c<f.getTop()?c:f.getTop();
+d=d>f.getRight()?d:f.getRight();e=e>f.getBottom()?e:f.getBottom()}a()};this.inflate=function(f){b=b-f;c=c-f;d=d+f;e=e+f;a()};this.minSelf=function(f){b=b>f.getLeft()?b:f.getLeft();c=c>f.getTop()?c:f.getTop();d=d<f.getRight()?d:f.getRight();e=e<f.getBottom()?e:f.getBottom();a()};this.intersects=function(a){return d<a.getLeft()||b>a.getRight()||e<a.getTop()||c>a.getBottom()?false:true};this.empty=function(){i=true;e=d=c=b=0;a()};this.isEmpty=function(){return i}};
+THREE.Math={clamp:function(a,b,c){return a<b?b:a>c?c:a},clampBottom:function(a,b){return a<b?b:a},mapLinear:function(a,b,c,d,e){return d+(a-b)*(e-d)/(c-b)},random16:function(){return(65280*Math.random()+255*Math.random())/65535},randInt:function(a,b){return a+Math.floor(Math.random()*(b-a+1))},randFloat:function(a,b){return a+Math.random()*(b-a)},randFloatSpread:function(a){return a*(0.5-Math.random())},sign:function(a){return a<0?-1:a>0?1:0}};THREE.Matrix3=function(){this.elements=new Float32Array(9)};
+THREE.Matrix3.prototype={constructor:THREE.Matrix3,getInverse:function(a){var b=a.elements,a=b[10]*b[5]-b[6]*b[9],c=-b[10]*b[1]+b[2]*b[9],d=b[6]*b[1]-b[2]*b[5],e=-b[10]*b[4]+b[6]*b[8],f=b[10]*b[0]-b[2]*b[8],h=-b[6]*b[0]+b[2]*b[4],i=b[9]*b[4]-b[5]*b[8],l=-b[9]*b[0]+b[1]*b[8],k=b[5]*b[0]-b[1]*b[4],b=b[0]*a+b[1]*e+b[2]*i;b===0&&console.warn("Matrix3.getInverse(): determinant == 0");var b=1/b,j=this.elements;j[0]=b*a;j[1]=b*c;j[2]=b*d;j[3]=b*e;j[4]=b*f;j[5]=b*h;j[6]=b*i;j[7]=b*l;j[8]=b*k;return this},
+transpose:function(){var a,b=this.elements;a=b[1];b[1]=b[3];b[3]=a;a=b[2];b[2]=b[6];b[6]=a;a=b[5];b[5]=b[7];b[7]=a;return this},transposeIntoArray:function(a){var b=this.m;a[0]=b[0];a[1]=b[3];a[2]=b[6];a[3]=b[1];a[4]=b[4];a[5]=b[7];a[6]=b[2];a[7]=b[5];a[8]=b[8];return this}};THREE.Matrix4=function(a,b,c,d,e,f,h,i,l,k,j,m,n,o,s,p){this.elements=new Float32Array(16);this.set(a!==void 0?a:1,b||0,c||0,d||0,e||0,f!==void 0?f:1,h||0,i||0,l||0,k||0,j!==void 0?j:1,m||0,n||0,o||0,s||0,p!==void 0?p:1)};
+THREE.Matrix4.prototype={constructor:THREE.Matrix4,set:function(a,b,c,d,e,f,h,i,l,k,j,m,n,o,s,p){var q=this.elements;q[0]=a;q[4]=b;q[8]=c;q[12]=d;q[1]=e;q[5]=f;q[9]=h;q[13]=i;q[2]=l;q[6]=k;q[10]=j;q[14]=m;q[3]=n;q[7]=o;q[11]=s;q[15]=p;return this},identity:function(){this.set(1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1);return this},copy:function(a){a=a.elements;this.set(a[0],a[4],a[8],a[12],a[1],a[5],a[9],a[13],a[2],a[6],a[10],a[14],a[3],a[7],a[11],a[15]);return this},lookAt:function(a,b,c){var d=this.elements,
+e=THREE.Matrix4.__v1,f=THREE.Matrix4.__v2,h=THREE.Matrix4.__v3;h.sub(a,b).normalize();if(h.length()===0)h.z=1;e.cross(c,h).normalize();if(e.length()===0){h.x=h.x+1.0E-4;e.cross(c,h).normalize()}f.cross(h,e);d[0]=e.x;d[4]=f.x;d[8]=h.x;d[1]=e.y;d[5]=f.y;d[9]=h.y;d[2]=e.z;d[6]=f.z;d[10]=h.z;return this},multiply:function(a,b){var c=a.elements,d=b.elements,e=this.elements,f=c[0],h=c[4],i=c[8],l=c[12],k=c[1],j=c[5],m=c[9],n=c[13],o=c[2],s=c[6],p=c[10],q=c[14],w=c[3],A=c[7],y=c[11],c=c[15],u=d[0],H=d[4],
+B=d[8],K=d[12],N=d[1],Y=d[5],ca=d[9],I=d[13],ba=d[2],ja=d[6],ya=d[10],D=d[14],g=d[3],Na=d[7],za=d[11],d=d[15];e[0]=f*u+h*N+i*ba+l*g;e[4]=f*H+h*Y+i*ja+l*Na;e[8]=f*B+h*ca+i*ya+l*za;e[12]=f*K+h*I+i*D+l*d;e[1]=k*u+j*N+m*ba+n*g;e[5]=k*H+j*Y+m*ja+n*Na;e[9]=k*B+j*ca+m*ya+n*za;e[13]=k*K+j*I+m*D+n*d;e[2]=o*u+s*N+p*ba+q*g;e[6]=o*H+s*Y+p*ja+q*Na;e[10]=o*B+s*ca+p*ya+q*za;e[14]=o*K+s*I+p*D+q*d;e[3]=w*u+A*N+y*ba+c*g;e[7]=w*H+A*Y+y*ja+c*Na;e[11]=w*B+A*ca+y*ya+c*za;e[15]=w*K+A*I+y*D+c*d;return this},multiplySelf:function(a){return this.multiply(this,
+a)},multiplyToArray:function(a,b,c){var d=this.elements;this.multiply(a,b);c[0]=d[0];c[1]=d[1];c[2]=d[2];c[3]=d[3];c[4]=d[4];c[5]=d[5];c[6]=d[6];c[7]=d[7];c[8]=d[8];c[9]=d[9];c[10]=d[10];c[11]=d[11];c[12]=d[12];c[13]=d[13];c[14]=d[14];c[15]=d[15];return this},multiplyScalar:function(a){var b=this.elements;b[0]=b[0]*a;b[4]=b[4]*a;b[8]=b[8]*a;b[12]=b[12]*a;b[1]=b[1]*a;b[5]=b[5]*a;b[9]=b[9]*a;b[13]=b[13]*a;b[2]=b[2]*a;b[6]=b[6]*a;b[10]=b[10]*a;b[14]=b[14]*a;b[3]=b[3]*a;b[7]=b[7]*a;b[11]=b[11]*a;b[15]=
+b[15]*a;return this},multiplyVector3:function(a){var b=this.elements,c=a.x,d=a.y,e=a.z,f=1/(b[3]*c+b[7]*d+b[11]*e+b[15]);a.x=(b[0]*c+b[4]*d+b[8]*e+b[12])*f;a.y=(b[1]*c+b[5]*d+b[9]*e+b[13])*f;a.z=(b[2]*c+b[6]*d+b[10]*e+b[14])*f;return a},multiplyVector4:function(a){var b=this.elements,c=a.x,d=a.y,e=a.z,f=a.w;a.x=b[0]*c+b[4]*d+b[8]*e+b[12]*f;a.y=b[1]*c+b[5]*d+b[9]*e+b[13]*f;a.z=b[2]*c+b[6]*d+b[10]*e+b[14]*f;a.w=b[3]*c+b[7]*d+b[11]*e+b[15]*f;return a},rotateAxis:function(a){var b=this.elements,c=a.x,
+d=a.y,e=a.z;a.x=c*b[0]+d*b[4]+e*b[8];a.y=c*b[1]+d*b[5]+e*b[9];a.z=c*b[2]+d*b[6]+e*b[10];a.normalize();return a},crossVector:function(a){var b=this.elements,c=new THREE.Vector4;c.x=b[0]*a.x+b[4]*a.y+b[8]*a.z+b[12]*a.w;c.y=b[1]*a.x+b[5]*a.y+b[9]*a.z+b[13]*a.w;c.z=b[2]*a.x+b[6]*a.y+b[10]*a.z+b[14]*a.w;c.w=a.w?b[3]*a.x+b[7]*a.y+b[11]*a.z+b[15]*a.w:1;return c},determinant:function(){var a=this.elements,b=a[0],c=a[4],d=a[8],e=a[12],f=a[1],h=a[5],i=a[9],l=a[13],k=a[2],j=a[6],m=a[10],n=a[14],o=a[3],s=a[7],
+p=a[11],a=a[15];return e*i*j*o-d*l*j*o-e*h*m*o+c*l*m*o+d*h*n*o-c*i*n*o-e*i*k*s+d*l*k*s+e*f*m*s-b*l*m*s-d*f*n*s+b*i*n*s+e*h*k*p-c*l*k*p-e*f*j*p+b*l*j*p+c*f*n*p-b*h*n*p-d*h*k*a+c*i*k*a+d*f*j*a-b*i*j*a-c*f*m*a+b*h*m*a},transpose:function(){var a=this.elements,b;b=a[1];a[1]=a[4];a[4]=b;b=a[2];a[2]=a[8];a[8]=b;b=a[6];a[6]=a[9];a[9]=b;b=a[3];a[3]=a[12];a[12]=b;b=a[7];a[7]=a[13];a[13]=b;b=a[11];a[11]=a[14];a[14]=b;return this},flattenToArray:function(a){var b=this.elements;a[0]=b[0];a[1]=b[1];a[2]=b[2];
+a[3]=b[3];a[4]=b[4];a[5]=b[5];a[6]=b[6];a[7]=b[7];a[8]=b[8];a[9]=b[9];a[10]=b[10];a[11]=b[11];a[12]=b[12];a[13]=b[13];a[14]=b[14];a[15]=b[15];return a},flattenToArrayOffset:function(a,b){var c=this.elements;a[b]=c[0];a[b+1]=c[1];a[b+2]=c[2];a[b+3]=c[3];a[b+4]=c[4];a[b+5]=c[5];a[b+6]=c[6];a[b+7]=c[7];a[b+8]=c[8];a[b+9]=c[9];a[b+10]=c[10];a[b+11]=c[11];a[b+12]=c[12];a[b+13]=c[13];a[b+14]=c[14];a[b+15]=c[15];return a},getPosition:function(){var a=this.elements;return THREE.Matrix4.__v1.set(a[12],a[13],
+a[14])},setPosition:function(a){var b=this.elements;b[12]=a.x;b[13]=a.y;b[14]=a.z;return this},getColumnX:function(){var a=this.elements;return THREE.Matrix4.__v1.set(a[0],a[1],a[2])},getColumnY:function(){var a=this.elements;return THREE.Matrix4.__v1.set(a[4],a[5],a[6])},getColumnZ:function(){var a=this.elements;return THREE.Matrix4.__v1.set(a[8],a[9],a[10])},getInverse:function(a){var b=this.elements,c=a.elements,d=c[0],e=c[4],f=c[8],h=c[12],i=c[1],l=c[5],k=c[9],j=c[13],m=c[2],n=c[6],o=c[10],s=
+c[14],p=c[3],q=c[7],w=c[11],c=c[15];b[0]=k*s*q-j*o*q+j*n*w-l*s*w-k*n*c+l*o*c;b[4]=h*o*q-f*s*q-h*n*w+e*s*w+f*n*c-e*o*c;b[8]=f*j*q-h*k*q+h*l*w-e*j*w-f*l*c+e*k*c;b[12]=h*k*n-f*j*n-h*l*o+e*j*o+f*l*s-e*k*s;b[1]=j*o*p-k*s*p-j*m*w+i*s*w+k*m*c-i*o*c;b[5]=f*s*p-h*o*p+h*m*w-d*s*w-f*m*c+d*o*c;b[9]=h*k*p-f*j*p-h*i*w+d*j*w+f*i*c-d*k*c;b[13]=f*j*m-h*k*m+h*i*o-d*j*o-f*i*s+d*k*s;b[2]=l*s*p-j*n*p+j*m*q-i*s*q-l*m*c+i*n*c;b[6]=h*n*p-e*s*p-h*m*q+d*s*q+e*m*c-d*n*c;b[10]=e*j*p-h*l*p+h*i*q-d*j*q-e*i*c+d*l*c;b[14]=h*l*m-
+e*j*m-h*i*n+d*j*n+e*i*s-d*l*s;b[3]=k*n*p-l*o*p-k*m*q+i*o*q+l*m*w-i*n*w;b[7]=e*o*p-f*n*p+f*m*q-d*o*q-e*m*w+d*n*w;b[11]=f*l*p-e*k*p-f*i*q+d*k*q+e*i*w-d*l*w;b[15]=e*k*m-f*l*m+f*i*n-d*k*n-e*i*o+d*l*o;this.multiplyScalar(1/a.determinant());return this},setRotationFromEuler:function(a,b){var c=this.elements,d=a.x,e=a.y,f=a.z,h=Math.cos(d),d=Math.sin(d),i=Math.cos(e),e=Math.sin(e),l=Math.cos(f),f=Math.sin(f);switch(b){case "YXZ":var k=i*l,j=i*f,m=e*l,n=e*f;c[0]=k+n*d;c[4]=m*d-j;c[8]=h*e;c[1]=h*f;c[5]=h*
+l;c[9]=-d;c[2]=j*d-m;c[6]=n+k*d;c[10]=h*i;break;case "ZXY":k=i*l;j=i*f;m=e*l;n=e*f;c[0]=k-n*d;c[4]=-h*f;c[8]=m+j*d;c[1]=j+m*d;c[5]=h*l;c[9]=n-k*d;c[2]=-h*e;c[6]=d;c[10]=h*i;break;case "ZYX":k=h*l;j=h*f;m=d*l;n=d*f;c[0]=i*l;c[4]=m*e-j;c[8]=k*e+n;c[1]=i*f;c[5]=n*e+k;c[9]=j*e-m;c[2]=-e;c[6]=d*i;c[10]=h*i;break;case "YZX":k=h*i;j=h*e;m=d*i;n=d*e;c[0]=i*l;c[4]=n-k*f;c[8]=m*f+j;c[1]=f;c[5]=h*l;c[9]=-d*l;c[2]=-e*l;c[6]=j*f+m;c[10]=k-n*f;break;case "XZY":k=h*i;j=h*e;m=d*i;n=d*e;c[0]=i*l;c[4]=-f;c[8]=e*l;
+c[1]=k*f+n;c[5]=h*l;c[9]=j*f-m;c[2]=m*f-j;c[6]=d*l;c[10]=n*f+k;break;default:k=h*l;j=h*f;m=d*l;n=d*f;c[0]=i*l;c[4]=-i*f;c[8]=e;c[1]=j+m*e;c[5]=k-n*e;c[9]=-d*i;c[2]=n-k*e;c[6]=m+j*e;c[10]=h*i}return this},setRotationFromQuaternion:function(a){var b=this.elements,c=a.x,d=a.y,e=a.z,f=a.w,h=c+c,i=d+d,l=e+e,a=c*h,k=c*i,c=c*l,j=d*i,d=d*l,e=e*l,h=f*h,i=f*i,f=f*l;b[0]=1-(j+e);b[4]=k-f;b[8]=c+i;b[1]=k+f;b[5]=1-(a+e);b[9]=d-h;b[2]=c-i;b[6]=d+h;b[10]=1-(a+j);return this},compose:function(a,b,c){var d=this.elements,
+e=THREE.Matrix4.__m1,f=THREE.Matrix4.__m2;e.identity();e.setRotationFromQuaternion(b);f.makeScale(c.x,c.y,c.z);this.multiply(e,f);d[12]=a.x;d[13]=a.y;d[14]=a.z;return this},decompose:function(a,b,c){var d=this.elements,e=THREE.Matrix4.__v1,f=THREE.Matrix4.__v2,h=THREE.Matrix4.__v3;e.set(d[0],d[1],d[2]);f.set(d[4],d[5],d[6]);h.set(d[8],d[9],d[10]);a=a instanceof THREE.Vector3?a:new THREE.Vector3;b=b instanceof THREE.Quaternion?b:new THREE.Quaternion;c=c instanceof THREE.Vector3?c:new THREE.Vector3;
+c.x=e.length();c.y=f.length();c.z=h.length();a.x=d[12];a.y=d[13];a.z=d[14];d=THREE.Matrix4.__m1;d.copy(this);d.elements[0]=d.elements[0]/c.x;d.elements[1]=d.elements[1]/c.x;d.elements[2]=d.elements[2]/c.x;d.elements[4]=d.elements[4]/c.y;d.elements[5]=d.elements[5]/c.y;d.elements[6]=d.elements[6]/c.y;d.elements[8]=d.elements[8]/c.z;d.elements[9]=d.elements[9]/c.z;d.elements[10]=d.elements[10]/c.z;b.setFromRotationMatrix(d);return[a,b,c]},extractPosition:function(a){var b=this.elements,a=a.elements;
+b[12]=a[12];b[13]=a[13];b[14]=a[14];return this},extractRotation:function(a){var b=this.elements,a=a.elements,c=THREE.Matrix4.__v1,d=1/c.set(a[0],a[1],a[2]).length(),e=1/c.set(a[4],a[5],a[6]).length(),c=1/c.set(a[8],a[9],a[10]).length();b[0]=a[0]*d;b[1]=a[1]*d;b[2]=a[2]*d;b[4]=a[4]*e;b[5]=a[5]*e;b[6]=a[6]*e;b[8]=a[8]*c;b[9]=a[9]*c;b[10]=a[10]*c;return this},translate:function(a){var b=this.elements,c=a.x,d=a.y,a=a.z;b[12]=b[0]*c+b[4]*d+b[8]*a+b[12];b[13]=b[1]*c+b[5]*d+b[9]*a+b[13];b[14]=b[2]*c+b[6]*
+d+b[10]*a+b[14];b[15]=b[3]*c+b[7]*d+b[11]*a+b[15];return this},rotateX:function(a){var b=this.elements,c=b[4],d=b[5],e=b[6],f=b[7],h=b[8],i=b[9],l=b[10],k=b[11],j=Math.cos(a),a=Math.sin(a);b[4]=j*c+a*h;b[5]=j*d+a*i;b[6]=j*e+a*l;b[7]=j*f+a*k;b[8]=j*h-a*c;b[9]=j*i-a*d;b[10]=j*l-a*e;b[11]=j*k-a*f;return this},rotateY:function(a){var b=this.elements,c=b[0],d=b[1],e=b[2],f=b[3],h=b[8],i=b[9],l=b[10],k=b[11],j=Math.cos(a),a=Math.sin(a);b[0]=j*c-a*h;b[1]=j*d-a*i;b[2]=j*e-a*l;b[3]=j*f-a*k;b[8]=j*h+a*c;b[9]=
+j*i+a*d;b[10]=j*l+a*e;b[11]=j*k+a*f;return this},rotateZ:function(a){var b=this.elements,c=b[0],d=b[1],e=b[2],f=b[3],h=b[4],i=b[5],l=b[6],k=b[7],j=Math.cos(a),a=Math.sin(a);b[0]=j*c+a*h;b[1]=j*d+a*i;b[2]=j*e+a*l;b[3]=j*f+a*k;b[4]=j*h-a*c;b[5]=j*i-a*d;b[6]=j*l-a*e;b[7]=j*k-a*f;return this},rotateByAxis:function(a,b){var c=this.elements;if(a.x===1&&a.y===0&&a.z===0)return this.rotateX(b);if(a.x===0&&a.y===1&&a.z===0)return this.rotateY(b);if(a.x===0&&a.y===0&&a.z===1)return this.rotateZ(b);var d=a.x,
+e=a.y,f=a.z,h=Math.sqrt(d*d+e*e+f*f),d=d/h,e=e/h,f=f/h,h=d*d,i=e*e,l=f*f,k=Math.cos(b),j=Math.sin(b),m=1-k,n=d*e*m,o=d*f*m,m=e*f*m,d=d*j,s=e*j,j=f*j,f=h+(1-h)*k,h=n+j,e=o-s,n=n-j,i=i+(1-i)*k,j=m+d,o=o+s,m=m-d,l=l+(1-l)*k,k=c[0],d=c[1],s=c[2],p=c[3],q=c[4],w=c[5],A=c[6],y=c[7],u=c[8],H=c[9],B=c[10],K=c[11];c[0]=f*k+h*q+e*u;c[1]=f*d+h*w+e*H;c[2]=f*s+h*A+e*B;c[3]=f*p+h*y+e*K;c[4]=n*k+i*q+j*u;c[5]=n*d+i*w+j*H;c[6]=n*s+i*A+j*B;c[7]=n*p+i*y+j*K;c[8]=o*k+m*q+l*u;c[9]=o*d+m*w+l*H;c[10]=o*s+m*A+l*B;c[11]=
+o*p+m*y+l*K;return this},scale:function(a){var b=this.elements,c=a.x,d=a.y,a=a.z;b[0]=b[0]*c;b[4]=b[4]*d;b[8]=b[8]*a;b[1]=b[1]*c;b[5]=b[5]*d;b[9]=b[9]*a;b[2]=b[2]*c;b[6]=b[6]*d;b[10]=b[10]*a;b[3]=b[3]*c;b[7]=b[7]*d;b[11]=b[11]*a;return this},getMaxScaleOnAxis:function(){var a=this.elements;return Math.sqrt(Math.max(a[0]*a[0]+a[1]*a[1]+a[2]*a[2],Math.max(a[4]*a[4]+a[5]*a[5]+a[6]*a[6],a[8]*a[8]+a[9]*a[9]+a[10]*a[10])))},makeTranslation:function(a,b,c){this.set(1,0,0,a,0,1,0,b,0,0,1,c,0,0,0,1);return this},
+makeRotationX:function(a){var b=Math.cos(a),a=Math.sin(a);this.set(1,0,0,0,0,b,-a,0,0,a,b,0,0,0,0,1);return this},makeRotationY:function(a){var b=Math.cos(a),a=Math.sin(a);this.set(b,0,a,0,0,1,0,0,-a,0,b,0,0,0,0,1);return this},makeRotationZ:function(a){var b=Math.cos(a),a=Math.sin(a);this.set(b,-a,0,0,a,b,0,0,0,0,1,0,0,0,0,1);return this},makeRotationAxis:function(a,b){var c=Math.cos(b),d=Math.sin(b),e=1-c,f=a.x,h=a.y,i=a.z,l=e*f,k=e*h;this.set(l*f+c,l*h-d*i,l*i+d*h,0,l*h+d*i,k*h+c,k*i-d*f,0,l*i-
+d*h,k*i+d*f,e*i*i+c,0,0,0,0,1);return this},makeScale:function(a,b,c){this.set(a,0,0,0,0,b,0,0,0,0,c,0,0,0,0,1);return this},makeFrustum:function(a,b,c,d,e,f){var h=this.elements;h[0]=2*e/(b-a);h[4]=0;h[8]=(b+a)/(b-a);h[12]=0;h[1]=0;h[5]=2*e/(d-c);h[9]=(d+c)/(d-c);h[13]=0;h[2]=0;h[6]=0;h[10]=-(f+e)/(f-e);h[14]=-2*f*e/(f-e);h[3]=0;h[7]=0;h[11]=-1;h[15]=0;return this},makePerspective:function(a,b,c,d){var a=c*Math.tan(a*Math.PI/360),e=-a;return this.makeFrustum(e*b,a*b,e,a,c,d)},makeOrthographic:function(a,
+b,c,d,e,f){var h=this.elements,i=b-a,l=c-d,k=f-e;h[0]=2/i;h[4]=0;h[8]=0;h[12]=-((b+a)/i);h[1]=0;h[5]=2/l;h[9]=0;h[13]=-((c+d)/l);h[2]=0;h[6]=0;h[10]=-2/k;h[14]=-((f+e)/k);h[3]=0;h[7]=0;h[11]=0;h[15]=1;return this},clone:function(){var a=this.elements;return new THREE.Matrix4(a[0],a[4],a[8],a[12],a[1],a[5],a[9],a[13],a[2],a[6],a[10],a[14],a[3],a[7],a[11],a[15])}};THREE.Matrix4.__v1=new THREE.Vector3;THREE.Matrix4.__v2=new THREE.Vector3;THREE.Matrix4.__v3=new THREE.Vector3;THREE.Matrix4.__m1=new THREE.Matrix4;
+THREE.Matrix4.__m2=new THREE.Matrix4;
+THREE.Object3D=function(){this.id=THREE.Object3DCount++;this.name="";this.parent=void 0;this.children=[];this.up=new THREE.Vector3(0,1,0);this.position=new THREE.Vector3;this.rotation=new THREE.Vector3;this.eulerOrder="XYZ";this.scale=new THREE.Vector3(1,1,1);this.flipSided=this.doubleSided=false;this.renderDepth=null;this.rotationAutoUpdate=true;this.matrix=new THREE.Matrix4;this.matrixWorld=new THREE.Matrix4;this.matrixRotationWorld=new THREE.Matrix4;this.matrixWorldNeedsUpdate=this.matrixAutoUpdate=
+true;this.quaternion=new THREE.Quaternion;this.useQuaternion=false;this.boundRadius=0;this.boundRadiusScale=1;this.visible=true;this.receiveShadow=this.castShadow=false;this.frustumCulled=true;this._vector=new THREE.Vector3};
+THREE.Object3D.prototype={constructor:THREE.Object3D,applyMatrix:function(a){this.matrix.multiply(a,this.matrix);this.scale.getScaleFromMatrix(this.matrix);this.rotation.getRotationFromMatrix(this.matrix,this.scale);this.position.getPositionFromMatrix(this.matrix)},translate:function(a,b){this.matrix.rotateAxis(b);this.position.addSelf(b.multiplyScalar(a))},translateX:function(a){this.translate(a,this._vector.set(1,0,0))},translateY:function(a){this.translate(a,this._vector.set(0,1,0))},translateZ:function(a){this.translate(a,
+this._vector.set(0,0,1))},lookAt:function(a){this.matrix.lookAt(a,this.position,this.up);this.rotationAutoUpdate&&this.rotation.getRotationFromMatrix(this.matrix)},add:function(a){if(a===this)console.warn("THREE.Object3D.add: An object can't be added as a child of itself.");else if(a instanceof THREE.Object3D){a.parent!==void 0&&a.parent.remove(a);a.parent=this;this.children.push(a);for(var b=this;b.parent!==void 0;)b=b.parent;b!==void 0&&b instanceof THREE.Scene&&b.__addObject(a)}},remove:function(a){var b=
+this.children.indexOf(a);if(b!==-1){a.parent=void 0;this.children.splice(b,1);for(b=this;b.parent!==void 0;)b=b.parent;b!==void 0&&b instanceof THREE.Scene&&b.__removeObject(a)}},getChildByName:function(a,b){var c,d,e;c=0;for(d=this.children.length;c<d;c++){e=this.children[c];if(e.name===a)return e;if(b){e=e.getChildByName(a,b);if(e!==void 0)return e}}},updateMatrix:function(){this.matrix.setPosition(this.position);this.useQuaternion?this.matrix.setRotationFromQuaternion(this.quaternion):this.matrix.setRotationFromEuler(this.rotation,
+this.eulerOrder);if(this.scale.x!==1||this.scale.y!==1||this.scale.z!==1){this.matrix.scale(this.scale);this.boundRadiusScale=Math.max(this.scale.x,Math.max(this.scale.y,this.scale.z))}this.matrixWorldNeedsUpdate=true},updateMatrixWorld:function(a){this.matrixAutoUpdate&&this.updateMatrix();if(this.matrixWorldNeedsUpdate||a){this.parent?this.matrixWorld.multiply(this.parent.matrixWorld,this.matrix):this.matrixWorld.copy(this.matrix);this.matrixWorldNeedsUpdate=false;a=true}for(var b=0,c=this.children.length;b<
+c;b++)this.children[b].updateMatrixWorld(a)}};THREE.Object3DCount=0;
+THREE.Projector=function(){function a(){var a=l[i]=l[i]||new THREE.RenderableVertex;i++;return a}function b(a,b){return b.z-a.z}function c(a,b){var c=0,d=1,g=a.z+a.w,e=b.z+b.w,f=-a.z+a.w,h=-b.z+b.w;if(g>=0&&e>=0&&f>=0&&h>=0)return true;if(g<0&&e<0||f<0&&h<0)return false;g<0?c=Math.max(c,g/(g-e)):e<0&&(d=Math.min(d,g/(g-e)));f<0?c=Math.max(c,f/(f-h)):h<0&&(d=Math.min(d,f/(f-h)));if(d<c)return false;a.lerpSelf(b,c);b.lerpSelf(a,1-d);return true}var d,e,f=[],h,i,l=[],k,j,m=[],n,o=[],s,p,q=[],w,A,y=[],
+u={objects:[],sprites:[],lights:[],elements:[]},H=new THREE.Vector3,B=new THREE.Vector4,K=new THREE.Matrix4,N=new THREE.Matrix4,Y=new THREE.Frustum,ca=new THREE.Vector4,I=new THREE.Vector4;this.projectVector=function(a,b){b.matrixWorldInverse.getInverse(b.matrixWorld);K.multiply(b.projectionMatrix,b.matrixWorldInverse);K.multiplyVector3(a);return a};this.unprojectVector=function(a,b){b.projectionMatrixInverse.getInverse(b.projectionMatrix);K.multiply(b.matrixWorld,b.projectionMatrixInverse);K.multiplyVector3(a);
+return a};this.pickingRay=function(a,b){var c;a.z=-1;c=new THREE.Vector3(a.x,a.y,1);this.unprojectVector(a,b);this.unprojectVector(c,b);c.subSelf(a).normalize();return new THREE.Ray(a,c)};this.projectGraph=function(a,c){e=0;u.objects.length=0;u.sprites.length=0;u.lights.length=0;var h=function(a){if(a.visible!==false){if((a instanceof THREE.Mesh||a instanceof THREE.Line)&&(a.frustumCulled===false||Y.contains(a))){H.copy(a.matrixWorld.getPosition());K.multiplyVector3(H);var b=f[e]=f[e]||new THREE.RenderableObject;
+e++;d=b;d.object=a;d.z=H.z;u.objects.push(d)}else a instanceof THREE.Light&&u.lights.push(a);for(var b=0,c=a.children.length;b<c;b++)h(a.children[b])}};h(a);c&&u.objects.sort(b);return u};this.projectScene=function(d,e,f){var D=e.near,g=e.far,H=false,za,Da,$,R,J,Z,Q,pa,O,sa,Ga,Ha,La,Oa,Ta;A=p=n=j=0;u.elements.length=0;if(e.parent===void 0){console.warn("DEPRECATED: Camera hasn't been added to a Scene. Adding it...");d.add(e)}d.updateMatrixWorld();e.matrixWorldInverse.getInverse(e.matrixWorld);K.multiply(e.projectionMatrix,
+e.matrixWorldInverse);Y.setFromMatrix(K);u=this.projectGraph(d,false);d=0;for(za=u.objects.length;d<za;d++){O=u.objects[d].object;sa=O.matrixWorld;i=0;if(O instanceof THREE.Mesh){Ga=O.geometry;Ha=O.geometry.materials;R=Ga.vertices;La=Ga.faces;Oa=Ga.faceVertexUvs;Ga=O.matrixRotationWorld.extractRotation(sa);Da=0;for($=R.length;Da<$;Da++){h=a();h.positionWorld.copy(R[Da]);sa.multiplyVector3(h.positionWorld);h.positionScreen.copy(h.positionWorld);K.multiplyVector4(h.positionScreen);h.positionScreen.x=
+h.positionScreen.x/h.positionScreen.w;h.positionScreen.y=h.positionScreen.y/h.positionScreen.w;h.visible=h.positionScreen.z>D&&h.positionScreen.z<g}R=0;for(Da=La.length;R<Da;R++){$=La[R];if($ instanceof THREE.Face3){J=l[$.a];Z=l[$.b];Q=l[$.c];if(J.visible&&Z.visible&&Q.visible){H=(Q.positionScreen.x-J.positionScreen.x)*(Z.positionScreen.y-J.positionScreen.y)-(Q.positionScreen.y-J.positionScreen.y)*(Z.positionScreen.x-J.positionScreen.x)<0;if(O.doubleSided||H!=O.flipSided){pa=m[j]=m[j]||new THREE.RenderableFace3;
+j++;k=pa;k.v1.copy(J);k.v2.copy(Z);k.v3.copy(Q)}else continue}else continue}else if($ instanceof THREE.Face4){J=l[$.a];Z=l[$.b];Q=l[$.c];pa=l[$.d];if(J.visible&&Z.visible&&Q.visible&&pa.visible){H=(pa.positionScreen.x-J.positionScreen.x)*(Z.positionScreen.y-J.positionScreen.y)-(pa.positionScreen.y-J.positionScreen.y)*(Z.positionScreen.x-J.positionScreen.x)<0||(Z.positionScreen.x-Q.positionScreen.x)*(pa.positionScreen.y-Q.positionScreen.y)-(Z.positionScreen.y-Q.positionScreen.y)*(pa.positionScreen.x-
+Q.positionScreen.x)<0;if(O.doubleSided||H!=O.flipSided){Ta=o[n]=o[n]||new THREE.RenderableFace4;n++;k=Ta;k.v1.copy(J);k.v2.copy(Z);k.v3.copy(Q);k.v4.copy(pa)}else continue}else continue}k.normalWorld.copy($.normal);!H&&(O.flipSided||O.doubleSided)&&k.normalWorld.negate();Ga.multiplyVector3(k.normalWorld);k.centroidWorld.copy($.centroid);sa.multiplyVector3(k.centroidWorld);k.centroidScreen.copy(k.centroidWorld);K.multiplyVector3(k.centroidScreen);Q=$.vertexNormals;J=0;for(Z=Q.length;J<Z;J++){pa=k.vertexNormalsWorld[J];
+pa.copy(Q[J]);!H&&(O.flipSided||O.doubleSided)&&pa.negate();Ga.multiplyVector3(pa)}J=0;for(Z=Oa.length;J<Z;J++)if(Ta=Oa[J][R]){Q=0;for(pa=Ta.length;Q<pa;Q++)k.uvs[J][Q]=Ta[Q]}k.material=O.material;k.faceMaterial=$.materialIndex!==null?Ha[$.materialIndex]:null;k.z=k.centroidScreen.z;u.elements.push(k)}}else if(O instanceof THREE.Line){N.multiply(K,sa);R=O.geometry.vertices;J=a();J.positionScreen.copy(R[0]);N.multiplyVector4(J.positionScreen);sa=O.type===THREE.LinePieces?2:1;Da=1;for($=R.length;Da<
+$;Da++){J=a();J.positionScreen.copy(R[Da]);N.multiplyVector4(J.positionScreen);if(!((Da+1)%sa>0)){Z=l[i-2];ca.copy(J.positionScreen);I.copy(Z.positionScreen);if(c(ca,I)){ca.multiplyScalar(1/ca.w);I.multiplyScalar(1/I.w);Ha=q[p]=q[p]||new THREE.RenderableLine;p++;s=Ha;s.v1.positionScreen.copy(ca);s.v2.positionScreen.copy(I);s.z=Math.max(ca.z,I.z);s.material=O.material;u.elements.push(s)}}}}}d=0;for(za=u.sprites.length;d<za;d++){O=u.sprites[d].object;sa=O.matrixWorld;if(O instanceof THREE.Particle){B.set(sa.elements[12],
+sa.elements[13],sa.elements[14],1);K.multiplyVector4(B);B.z=B.z/B.w;if(B.z>0&&B.z<1){D=y[A]=y[A]||new THREE.RenderableParticle;A++;w=D;w.x=B.x/B.w;w.y=B.y/B.w;w.z=B.z;w.rotation=O.rotation.z;w.scale.x=O.scale.x*Math.abs(w.x-(B.x+e.projectionMatrix.elements[0])/(B.w+e.projectionMatrix.elements[12]));w.scale.y=O.scale.y*Math.abs(w.y-(B.y+e.projectionMatrix.elements[5])/(B.w+e.projectionMatrix.elements[13]));w.material=O.material;u.elements.push(w)}}}f&&u.elements.sort(b);return u}};
+THREE.Quaternion=function(a,b,c,d){this.x=a||0;this.y=b||0;this.z=c||0;this.w=d!==void 0?d:1};
+THREE.Quaternion.prototype={constructor:THREE.Quaternion,set:function(a,b,c,d){this.x=a;this.y=b;this.z=c;this.w=d;return this},copy:function(a){this.x=a.x;this.y=a.y;this.z=a.z;this.w=a.w;return this},setFromEuler:function(a){var b=Math.PI/360,c=a.x*b,d=a.y*b,e=a.z*b,a=Math.cos(d),d=Math.sin(d),b=Math.cos(-e),e=Math.sin(-e),f=Math.cos(c),c=Math.sin(c),h=a*b,i=d*e;this.w=h*f-i*c;this.x=h*c+i*f;this.y=d*b*f+a*e*c;this.z=a*e*f-d*b*c;return this},setFromAxisAngle:function(a,b){var c=b/2,d=Math.sin(c);
+this.x=a.x*d;this.y=a.y*d;this.z=a.z*d;this.w=Math.cos(c);return this},setFromRotationMatrix:function(a){var b=Math.pow(a.determinant(),1/3);this.w=Math.sqrt(Math.max(0,b+a.elements[0]+a.elements[5]+a.elements[10]))/2;this.x=Math.sqrt(Math.max(0,b+a.elements[0]-a.elements[5]-a.elements[10]))/2;this.y=Math.sqrt(Math.max(0,b-a.elements[0]+a.elements[5]-a.elements[10]))/2;this.z=Math.sqrt(Math.max(0,b-a.elements[0]-a.elements[5]+a.elements[10]))/2;this.x=a.elements[6]-a.elements[9]<0?-Math.abs(this.x):
+Math.abs(this.x);this.y=a.elements[8]-a.elements[2]<0?-Math.abs(this.y):Math.abs(this.y);this.z=a.elements[1]-a.elements[4]<0?-Math.abs(this.z):Math.abs(this.z);this.normalize();return this},calculateW:function(){this.w=-Math.sqrt(Math.abs(1-this.x*this.x-this.y*this.y-this.z*this.z));return this},inverse:function(){this.x=this.x*-1;this.y=this.y*-1;this.z=this.z*-1;return this},length:function(){return Math.sqrt(this.x*this.x+this.y*this.y+this.z*this.z+this.w*this.w)},normalize:function(){var a=
+Math.sqrt(this.x*this.x+this.y*this.y+this.z*this.z+this.w*this.w);if(a===0)this.w=this.z=this.y=this.x=0;else{a=1/a;this.x=this.x*a;this.y=this.y*a;this.z=this.z*a;this.w=this.w*a}return this},multiply:function(a,b){this.x=a.x*b.w+a.y*b.z-a.z*b.y+a.w*b.x;this.y=-a.x*b.z+a.y*b.w+a.z*b.x+a.w*b.y;this.z=a.x*b.y-a.y*b.x+a.z*b.w+a.w*b.z;this.w=-a.x*b.x-a.y*b.y-a.z*b.z+a.w*b.w;return this},multiplySelf:function(a){var b=this.x,c=this.y,d=this.z,e=this.w,f=a.x,h=a.y,i=a.z,a=a.w;this.x=b*a+e*f+c*i-d*h;this.y=
+c*a+e*h+d*f-b*i;this.z=d*a+e*i+b*h-c*f;this.w=e*a-b*f-c*h-d*i;return this},multiplyVector3:function(a,b){b||(b=a);var c=a.x,d=a.y,e=a.z,f=this.x,h=this.y,i=this.z,l=this.w,k=l*c+h*e-i*d,j=l*d+i*c-f*e,m=l*e+f*d-h*c,c=-f*c-h*d-i*e;b.x=k*l+c*-f+j*-i-m*-h;b.y=j*l+c*-h+m*-f-k*-i;b.z=m*l+c*-i+k*-h-j*-f;return b},clone:function(){return new THREE.Quaternion(this.x,this.y,this.z,this.w)}};
+THREE.Quaternion.slerp=function(a,b,c,d){var e=a.w*b.w+a.x*b.x+a.y*b.y+a.z*b.z;if(e<0){c.w=-b.w;c.x=-b.x;c.y=-b.y;c.z=-b.z;e=-e}else c.copy(b);if(Math.abs(e)>=1){c.w=a.w;c.x=a.x;c.y=a.y;c.z=a.z;return c}var f=Math.acos(e),e=Math.sqrt(1-e*e);if(Math.abs(e)<0.001){c.w=0.5*(a.w+b.w);c.x=0.5*(a.x+b.x);c.y=0.5*(a.y+b.y);c.z=0.5*(a.z+b.z);return c}b=Math.sin((1-d)*f)/e;d=Math.sin(d*f)/e;c.w=a.w*b+c.w*d;c.x=a.x*b+c.x*d;c.y=a.y*b+c.y*d;c.z=a.z*b+c.z*d;return c};THREE.Vertex=function(){console.warn("THREE.Vertex has been DEPRECATED. Use THREE.Vector3 instead.")};
+THREE.Face3=function(a,b,c,d,e,f){this.a=a;this.b=b;this.c=c;this.normal=d instanceof THREE.Vector3?d:new THREE.Vector3;this.vertexNormals=d instanceof Array?d:[];this.color=e instanceof THREE.Color?e:new THREE.Color;this.vertexColors=e instanceof Array?e:[];this.vertexTangents=[];this.materialIndex=f;this.centroid=new THREE.Vector3};
+THREE.Face3.prototype={constructor:THREE.Face3,clone:function(){var a=new THREE.Face3(this.a,this.b,this.c);a.normal.copy(this.normal);a.color.copy(this.color);a.centroid.copy(this.centroid);a.materialIndex=this.materialIndex;var b,c;b=0;for(c=this.vertexNormals.length;b<c;b++)a.vertexNormals[b]=this.vertexNormals[b].clone();b=0;for(c=this.vertexColors.length;b<c;b++)a.vertexColors[b]=this.vertexColors[b].clone();b=0;for(c=this.vertexTangents.length;b<c;b++)a.vertexTangents[b]=this.vertexTangents[b].clone();
+return a}};THREE.Face4=function(a,b,c,d,e,f,h){this.a=a;this.b=b;this.c=c;this.d=d;this.normal=e instanceof THREE.Vector3?e:new THREE.Vector3;this.vertexNormals=e instanceof Array?e:[];this.color=f instanceof THREE.Color?f:new THREE.Color;this.vertexColors=f instanceof Array?f:[];this.vertexTangents=[];this.materialIndex=h;this.centroid=new THREE.Vector3};
+THREE.Face4.prototype={constructor:THREE.Face4,clone:function(){var a=new THREE.Face4(this.a,this.b,this.c,this.d);a.normal.copy(this.normal);a.color.copy(this.color);a.centroid.copy(this.centroid);a.materialIndex=this.materialIndex;var b,c;b=0;for(c=this.vertexNormals.length;b<c;b++)a.vertexNormals[b]=this.vertexNormals[b].clone();b=0;for(c=this.vertexColors.length;b<c;b++)a.vertexColors[b]=this.vertexColors[b].clone();b=0;for(c=this.vertexTangents.length;b<c;b++)a.vertexTangents[b]=this.vertexTangents[b].clone();
+return a}};THREE.UV=function(a,b){this.u=a||0;this.v=b||0};THREE.UV.prototype={constructor:THREE.UV,set:function(a,b){this.u=a;this.v=b;return this},copy:function(a){this.u=a.u;this.v=a.v;return this},lerpSelf:function(a,b){this.u=this.u+(a.u-this.u)*b;this.v=this.v+(a.v-this.v)*b;return this},clone:function(){return new THREE.UV(this.u,this.v)}};
+THREE.Geometry=function(){this.id=THREE.GeometryCount++;this.vertices=[];this.colors=[];this.materials=[];this.faces=[];this.faceUvs=[[]];this.faceVertexUvs=[[]];this.morphTargets=[];this.morphColors=[];this.morphNormals=[];this.skinWeights=[];this.skinIndices=[];this.boundingSphere=this.boundingBox=null;this.dynamic=this.hasTangents=false};
+THREE.Geometry.prototype={constructor:THREE.Geometry,applyMatrix:function(a){var b=new THREE.Matrix4;b.extractRotation(a);for(var c=0,d=this.vertices.length;c<d;c++)a.multiplyVector3(this.vertices[c]);c=0;for(d=this.faces.length;c<d;c++){var e=this.faces[c];b.multiplyVector3(e.normal);for(var f=0,h=e.vertexNormals.length;f<h;f++)b.multiplyVector3(e.vertexNormals[f]);a.multiplyVector3(e.centroid)}},computeCentroids:function(){var a,b,c;a=0;for(b=this.faces.length;a<b;a++){c=this.faces[a];c.centroid.set(0,
+0,0);if(c instanceof THREE.Face3){c.centroid.addSelf(this.vertices[c.a]);c.centroid.addSelf(this.vertices[c.b]);c.centroid.addSelf(this.vertices[c.c]);c.centroid.divideScalar(3)}else if(c instanceof THREE.Face4){c.centroid.addSelf(this.vertices[c.a]);c.centroid.addSelf(this.vertices[c.b]);c.centroid.addSelf(this.vertices[c.c]);c.centroid.addSelf(this.vertices[c.d]);c.centroid.divideScalar(4)}}},computeFaceNormals:function(){var a,b,c,d,e,f,h=new THREE.Vector3,i=new THREE.Vector3;a=0;for(b=this.faces.length;a<
+b;a++){c=this.faces[a];d=this.vertices[c.a];e=this.vertices[c.b];f=this.vertices[c.c];h.sub(f,e);i.sub(d,e);h.crossSelf(i);h.isZero()||h.normalize();c.normal.copy(h)}},computeVertexNormals:function(){var a,b,c,d;if(this.__tmpVertices===void 0){d=this.__tmpVertices=Array(this.vertices.length);a=0;for(b=this.vertices.length;a<b;a++)d[a]=new THREE.Vector3;a=0;for(b=this.faces.length;a<b;a++){c=this.faces[a];if(c instanceof THREE.Face3)c.vertexNormals=[new THREE.Vector3,new THREE.Vector3,new THREE.Vector3];
+else if(c instanceof THREE.Face4)c.vertexNormals=[new THREE.Vector3,new THREE.Vector3,new THREE.Vector3,new THREE.Vector3]}}else{d=this.__tmpVertices;a=0;for(b=this.vertices.length;a<b;a++)d[a].set(0,0,0)}a=0;for(b=this.faces.length;a<b;a++){c=this.faces[a];if(c instanceof THREE.Face3){d[c.a].addSelf(c.normal);d[c.b].addSelf(c.normal);d[c.c].addSelf(c.normal)}else if(c instanceof THREE.Face4){d[c.a].addSelf(c.normal);d[c.b].addSelf(c.normal);d[c.c].addSelf(c.normal);d[c.d].addSelf(c.normal)}}a=0;
+for(b=this.vertices.length;a<b;a++)d[a].normalize();a=0;for(b=this.faces.length;a<b;a++){c=this.faces[a];if(c instanceof THREE.Face3){c.vertexNormals[0].copy(d[c.a]);c.vertexNormals[1].copy(d[c.b]);c.vertexNormals[2].copy(d[c.c])}else if(c instanceof THREE.Face4){c.vertexNormals[0].copy(d[c.a]);c.vertexNormals[1].copy(d[c.b]);c.vertexNormals[2].copy(d[c.c]);c.vertexNormals[3].copy(d[c.d])}}},computeMorphNormals:function(){var a,b,c,d,e;c=0;for(d=this.faces.length;c<d;c++){e=this.faces[c];e.__originalFaceNormal?
+e.__originalFaceNormal.copy(e.normal):e.__originalFaceNormal=e.normal.clone();if(!e.__originalVertexNormals)e.__originalVertexNormals=[];a=0;for(b=e.vertexNormals.length;a<b;a++)e.__originalVertexNormals[a]?e.__originalVertexNormals[a].copy(e.vertexNormals[a]):e.__originalVertexNormals[a]=e.vertexNormals[a].clone()}var f=new THREE.Geometry;f.faces=this.faces;a=0;for(b=this.morphTargets.length;a<b;a++){if(!this.morphNormals[a]){this.morphNormals[a]={};this.morphNormals[a].faceNormals=[];this.morphNormals[a].vertexNormals=
+[];var h=this.morphNormals[a].faceNormals,i=this.morphNormals[a].vertexNormals,l,k;c=0;for(d=this.faces.length;c<d;c++){e=this.faces[c];l=new THREE.Vector3;k=e instanceof THREE.Face3?{a:new THREE.Vector3,b:new THREE.Vector3,c:new THREE.Vector3}:{a:new THREE.Vector3,b:new THREE.Vector3,c:new THREE.Vector3,d:new THREE.Vector3};h.push(l);i.push(k)}}h=this.morphNormals[a];f.vertices=this.morphTargets[a].vertices;f.computeFaceNormals();f.computeVertexNormals();c=0;for(d=this.faces.length;c<d;c++){e=this.faces[c];
+l=h.faceNormals[c];k=h.vertexNormals[c];l.copy(e.normal);if(e instanceof THREE.Face3){k.a.copy(e.vertexNormals[0]);k.b.copy(e.vertexNormals[1]);k.c.copy(e.vertexNormals[2])}else{k.a.copy(e.vertexNormals[0]);k.b.copy(e.vertexNormals[1]);k.c.copy(e.vertexNormals[2]);k.d.copy(e.vertexNormals[3])}}}c=0;for(d=this.faces.length;c<d;c++){e=this.faces[c];e.normal=e.__originalFaceNormal;e.vertexNormals=e.__originalVertexNormals}},computeTangents:function(){function a(a,b,c,d,g,e,f){i=a.vertices[b];l=a.vertices[c];
+k=a.vertices[d];j=h[g];m=h[e];n=h[f];o=l.x-i.x;s=k.x-i.x;p=l.y-i.y;q=k.y-i.y;w=l.z-i.z;A=k.z-i.z;y=m.u-j.u;u=n.u-j.u;H=m.v-j.v;B=n.v-j.v;K=1/(y*B-u*H);I.set((B*o-H*s)*K,(B*p-H*q)*K,(B*w-H*A)*K);ba.set((y*s-u*o)*K,(y*q-u*p)*K,(y*A-u*w)*K);Y[b].addSelf(I);Y[c].addSelf(I);Y[d].addSelf(I);ca[b].addSelf(ba);ca[c].addSelf(ba);ca[d].addSelf(ba)}var b,c,d,e,f,h,i,l,k,j,m,n,o,s,p,q,w,A,y,u,H,B,K,N,Y=[],ca=[],I=new THREE.Vector3,ba=new THREE.Vector3,ja=new THREE.Vector3,ya=new THREE.Vector3,D=new THREE.Vector3;
+b=0;for(c=this.vertices.length;b<c;b++){Y[b]=new THREE.Vector3;ca[b]=new THREE.Vector3}b=0;for(c=this.faces.length;b<c;b++){f=this.faces[b];h=this.faceVertexUvs[0][b];if(f instanceof THREE.Face3)a(this,f.a,f.b,f.c,0,1,2);else if(f instanceof THREE.Face4){a(this,f.a,f.b,f.d,0,1,3);a(this,f.b,f.c,f.d,1,2,3)}}var g=["a","b","c","d"];b=0;for(c=this.faces.length;b<c;b++){f=this.faces[b];for(d=0;d<f.vertexNormals.length;d++){D.copy(f.vertexNormals[d]);e=f[g[d]];N=Y[e];ja.copy(N);ja.subSelf(D.multiplyScalar(D.dot(N))).normalize();
+ya.cross(f.vertexNormals[d],N);e=ya.dot(ca[e]);e=e<0?-1:1;f.vertexTangents[d]=new THREE.Vector4(ja.x,ja.y,ja.z,e)}}this.hasTangents=true},computeBoundingBox:function(){if(!this.boundingBox)this.boundingBox={min:new THREE.Vector3,max:new THREE.Vector3};if(this.vertices.length>0){var a;a=this.vertices[0];this.boundingBox.min.copy(a);this.boundingBox.max.copy(a);for(var b=this.boundingBox.min,c=this.boundingBox.max,d=1,e=this.vertices.length;d<e;d++){a=this.vertices[d];if(a.x<b.x)b.x=a.x;else if(a.x>
+c.x)c.x=a.x;if(a.y<b.y)b.y=a.y;else if(a.y>c.y)c.y=a.y;if(a.z<b.z)b.z=a.z;else if(a.z>c.z)c.z=a.z}}else{this.boundingBox.min.set(0,0,0);this.boundingBox.max.set(0,0,0)}},computeBoundingSphere:function(){if(!this.boundingSphere)this.boundingSphere={radius:0};for(var a,b=0,c=0,d=this.vertices.length;c<d;c++){a=this.vertices[c].length();a>b&&(b=a)}this.boundingSphere.radius=b},mergeVertices:function(){var a={},b=[],c=[],d,e=Math.pow(10,4),f,h,i;f=0;for(h=this.vertices.length;f<h;f++){d=this.vertices[f];
+d=[Math.round(d.x*e),Math.round(d.y*e),Math.round(d.z*e)].join("_");if(a[d]===void 0){a[d]=f;b.push(this.vertices[f]);c[f]=b.length-1}else c[f]=c[a[d]]}f=0;for(h=this.faces.length;f<h;f++){e=this.faces[f];if(e instanceof THREE.Face3){e.a=c[e.a];e.b=c[e.b];e.c=c[e.c]}else if(e instanceof THREE.Face4){e.a=c[e.a];e.b=c[e.b];e.c=c[e.c];e.d=c[e.d];d=[e.a,e.b,e.c,e.d];for(a=3;a>0;a--)if(d.indexOf(e["abcd"[a]])!=a){d.splice(a,1);this.faces[f]=new THREE.Face3(d[0],d[1],d[2]);e=0;for(d=this.faceVertexUvs.length;e<
+d;e++)(i=this.faceVertexUvs[e][f])&&i.splice(a,1);break}}}c=this.vertices.length-b.length;this.vertices=b;return c}};THREE.GeometryCount=0;
+THREE.Spline=function(a){function b(a,b,c,d,e,f,h){a=(c-a)*0.5;d=(d-b)*0.5;return(2*(b-c)+a+d)*h+(-3*(b-c)-2*a-d)*f+a*e+b}this.points=a;var c=[],d={x:0,y:0,z:0},e,f,h,i,l,k,j,m,n;this.initFromArray=function(a){this.points=[];for(var b=0;b<a.length;b++)this.points[b]={x:a[b][0],y:a[b][1],z:a[b][2]}};this.getPoint=function(a){e=(this.points.length-1)*a;f=Math.floor(e);h=e-f;c[0]=f===0?f:f-1;c[1]=f;c[2]=f>this.points.length-2?this.points.length-1:f+1;c[3]=f>this.points.length-3?this.points.length-1:
+f+2;k=this.points[c[0]];j=this.points[c[1]];m=this.points[c[2]];n=this.points[c[3]];i=h*h;l=h*i;d.x=b(k.x,j.x,m.x,n.x,h,i,l);d.y=b(k.y,j.y,m.y,n.y,h,i,l);d.z=b(k.z,j.z,m.z,n.z,h,i,l);return d};this.getControlPointsArray=function(){var a,b,c=this.points.length,d=[];for(a=0;a<c;a++){b=this.points[a];d[a]=[b.x,b.y,b.z]}return d};this.getLength=function(a){var b,c,d,e=b=b=0,f=new THREE.Vector3,h=new THREE.Vector3,i=[],k=0;i[0]=0;a||(a=100);c=this.points.length*a;f.copy(this.points[0]);for(a=1;a<c;a++){b=
+a/c;d=this.getPoint(b);h.copy(d);k=k+h.distanceTo(f);f.copy(d);b=(this.points.length-1)*b;b=Math.floor(b);if(b!=e){i[b]=k;e=b}}i[i.length]=k;return{chunks:i,total:k}};this.reparametrizeByArcLength=function(a){var b,c,d,e,f,h,i=[],k=new THREE.Vector3,j=this.getLength();i.push(k.copy(this.points[0]).clone());for(b=1;b<this.points.length;b++){c=j.chunks[b]-j.chunks[b-1];h=Math.ceil(a*c/j.total);e=(b-1)/(this.points.length-1);f=b/(this.points.length-1);for(c=1;c<h-1;c++){d=e+c*(1/h)*(f-e);d=this.getPoint(d);
+i.push(k.copy(d).clone())}i.push(k.copy(this.points[b]).clone())}this.points=i}};THREE.Camera=function(){THREE.Object3D.call(this);this.matrixWorldInverse=new THREE.Matrix4;this.projectionMatrix=new THREE.Matrix4;this.projectionMatrixInverse=new THREE.Matrix4};THREE.Camera.prototype=new THREE.Object3D;THREE.Camera.prototype.constructor=THREE.Camera;THREE.Camera.prototype.lookAt=function(a){this.matrix.lookAt(this.position,a,this.up);this.rotationAutoUpdate&&this.rotation.getRotationFromMatrix(this.matrix)};
+THREE.OrthographicCamera=function(a,b,c,d,e,f){THREE.Camera.call(this);this.left=a;this.right=b;this.top=c;this.bottom=d;this.near=e!==void 0?e:0.1;this.far=f!==void 0?f:2E3;this.updateProjectionMatrix()};THREE.OrthographicCamera.prototype=new THREE.Camera;THREE.OrthographicCamera.prototype.constructor=THREE.OrthographicCamera;THREE.OrthographicCamera.prototype.updateProjectionMatrix=function(){this.projectionMatrix.makeOrthographic(this.left,this.right,this.top,this.bottom,this.near,this.far)};
+THREE.PerspectiveCamera=function(a,b,c,d){THREE.Camera.call(this);this.fov=a!==void 0?a:50;this.aspect=b!==void 0?b:1;this.near=c!==void 0?c:0.1;this.far=d!==void 0?d:2E3;this.updateProjectionMatrix()};THREE.PerspectiveCamera.prototype=new THREE.Camera;THREE.PerspectiveCamera.prototype.constructor=THREE.PerspectiveCamera;THREE.PerspectiveCamera.prototype.setLens=function(a,b){this.fov=2*Math.atan((b!==void 0?b:24)/(a*2))*(180/Math.PI);this.updateProjectionMatrix()};
+THREE.PerspectiveCamera.prototype.setViewOffset=function(a,b,c,d,e,f){this.fullWidth=a;this.fullHeight=b;this.x=c;this.y=d;this.width=e;this.height=f;this.updateProjectionMatrix()};
+THREE.PerspectiveCamera.prototype.updateProjectionMatrix=function(){if(this.fullWidth){var a=this.fullWidth/this.fullHeight,b=Math.tan(this.fov*Math.PI/360)*this.near,c=-b,d=a*c,a=Math.abs(a*b-d),c=Math.abs(b-c);this.projectionMatrix.makeFrustum(d+this.x*a/this.fullWidth,d+(this.x+this.width)*a/this.fullWidth,b-(this.y+this.height)*c/this.fullHeight,b-this.y*c/this.fullHeight,this.near,this.far)}else this.projectionMatrix.makePerspective(this.fov,this.aspect,this.near,this.far)};
+THREE.Light=function(a){THREE.Object3D.call(this);this.color=new THREE.Color(a)};THREE.Light.prototype=new THREE.Object3D;THREE.Light.prototype.constructor=THREE.Light;THREE.Light.prototype.supr=THREE.Object3D.prototype;THREE.AmbientLight=function(a){THREE.Light.call(this,a)};THREE.AmbientLight.prototype=new THREE.Light;THREE.AmbientLight.prototype.constructor=THREE.AmbientLight;
+THREE.DirectionalLight=function(a,b,c){THREE.Light.call(this,a);this.position=new THREE.Vector3(0,1,0);this.target=new THREE.Object3D;this.intensity=b!==void 0?b:1;this.distance=c!==void 0?c:0;this.onlyShadow=this.castShadow=false;this.shadowCameraNear=50;this.shadowCameraFar=5E3;this.shadowCameraLeft=-500;this.shadowCameraTop=this.shadowCameraRight=500;this.shadowCameraBottom=-500;this.shadowCameraVisible=false;this.shadowBias=0;this.shadowDarkness=0.5;this.shadowMapHeight=this.shadowMapWidth=512;
+this.shadowCascade=false;this.shadowCascadeOffset=new THREE.Vector3(0,0,-1E3);this.shadowCascadeCount=2;this.shadowCascadeBias=[0,0,0];this.shadowCascadeWidth=[512,512,512];this.shadowCascadeHeight=[512,512,512];this.shadowCascadeNearZ=[-1,0.99,0.998];this.shadowCascadeFarZ=[0.99,0.998,1];this.shadowCascadeArray=[];this.shadowMatrix=this.shadowCamera=this.shadowMapSize=this.shadowMap=null};THREE.DirectionalLight.prototype=new THREE.Light;THREE.DirectionalLight.prototype.constructor=THREE.DirectionalLight;
+THREE.PointLight=function(a,b,c){THREE.Light.call(this,a);this.position=new THREE.Vector3(0,0,0);this.intensity=b!==void 0?b:1;this.distance=c!==void 0?c:0};THREE.PointLight.prototype=new THREE.Light;THREE.PointLight.prototype.constructor=THREE.PointLight;
+THREE.SpotLight=function(a,b,c,d,e){THREE.Light.call(this,a);this.position=new THREE.Vector3(0,1,0);this.target=new THREE.Object3D;this.intensity=b!==void 0?b:1;this.distance=c!==void 0?c:0;this.angle=d!==void 0?d:Math.PI/2;this.exponent=e!==void 0?e:10;this.onlyShadow=this.castShadow=false;this.shadowCameraNear=50;this.shadowCameraFar=5E3;this.shadowCameraFov=50;this.shadowCameraVisible=false;this.shadowBias=0;this.shadowDarkness=0.5;this.shadowMapHeight=this.shadowMapWidth=512;this.shadowMatrix=
+this.shadowCamera=this.shadowMapSize=this.shadowMap=null};THREE.SpotLight.prototype=new THREE.Light;THREE.SpotLight.prototype.constructor=THREE.SpotLight;
+THREE.Material=function(a){a=a||{};this.id=THREE.MaterialCount++;this.name="";this.opacity=a.opacity!==void 0?a.opacity:1;this.transparent=a.transparent!==void 0?a.transparent:false;this.blending=a.blending!==void 0?a.blending:THREE.NormalBlending;this.blendSrc=a.blendSrc!==void 0?a.blendSrc:THREE.SrcAlphaFactor;this.blendDst=a.blendDst!==void 0?a.blendDst:THREE.OneMinusSrcAlphaFactor;this.blendEquation=a.blendEquation!==void 0?a.blendEquation:THREE.AddEquation;this.depthTest=a.depthTest!==void 0?
+a.depthTest:true;this.depthWrite=a.depthWrite!==void 0?a.depthWrite:true;this.polygonOffset=a.polygonOffset!==void 0?a.polygonOffset:false;this.polygonOffsetFactor=a.polygonOffsetFactor!==void 0?a.polygonOffsetFactor:0;this.polygonOffsetUnits=a.polygonOffsetUnits!==void 0?a.polygonOffsetUnits:0;this.alphaTest=a.alphaTest!==void 0?a.alphaTest:0;this.overdraw=a.overdraw!==void 0?a.overdraw:false;this.needsUpdate=this.visible=true};THREE.MaterialCount=0;THREE.NoShading=0;THREE.FlatShading=1;
+THREE.SmoothShading=2;THREE.NoColors=0;THREE.FaceColors=1;THREE.VertexColors=2;THREE.NoBlending=0;THREE.NormalBlending=1;THREE.AdditiveBlending=2;THREE.SubtractiveBlending=3;THREE.MultiplyBlending=4;THREE.AdditiveAlphaBlending=5;THREE.CustomBlending=6;THREE.AddEquation=100;THREE.SubtractEquation=101;THREE.ReverseSubtractEquation=102;THREE.ZeroFactor=200;THREE.OneFactor=201;THREE.SrcColorFactor=202;THREE.OneMinusSrcColorFactor=203;THREE.SrcAlphaFactor=204;THREE.OneMinusSrcAlphaFactor=205;
+THREE.DstAlphaFactor=206;THREE.OneMinusDstAlphaFactor=207;THREE.DstColorFactor=208;THREE.OneMinusDstColorFactor=209;THREE.SrcAlphaSaturateFactor=210;
+THREE.LineBasicMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.linewidth=a.linewidth!==void 0?a.linewidth:1;this.linecap=a.linecap!==void 0?a.linecap:"round";this.linejoin=a.linejoin!==void 0?a.linejoin:"round";this.vertexColors=a.vertexColors?a.vertexColors:false;this.fog=a.fog!==void 0?a.fog:true};THREE.LineBasicMaterial.prototype=new THREE.Material;THREE.LineBasicMaterial.prototype.constructor=THREE.LineBasicMaterial;
+THREE.MeshBasicMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.map=a.map!==void 0?a.map:null;this.lightMap=a.lightMap!==void 0?a.lightMap:null;this.envMap=a.envMap!==void 0?a.envMap:null;this.combine=a.combine!==void 0?a.combine:THREE.MultiplyOperation;this.reflectivity=a.reflectivity!==void 0?a.reflectivity:1;this.refractionRatio=a.refractionRatio!==void 0?a.refractionRatio:0.98;this.fog=a.fog!==void 0?a.fog:
+true;this.shading=a.shading!==void 0?a.shading:THREE.SmoothShading;this.wireframe=a.wireframe!==void 0?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth!==void 0?a.wireframeLinewidth:1;this.wireframeLinecap=a.wireframeLinecap!==void 0?a.wireframeLinecap:"round";this.wireframeLinejoin=a.wireframeLinejoin!==void 0?a.wireframeLinejoin:"round";this.vertexColors=a.vertexColors!==void 0?a.vertexColors:THREE.NoColors;this.skinning=a.skinning!==void 0?a.skinning:false;this.morphTargets=a.morphTargets!==
+void 0?a.morphTargets:false};THREE.MeshBasicMaterial.prototype=new THREE.Material;THREE.MeshBasicMaterial.prototype.constructor=THREE.MeshBasicMaterial;
+THREE.MeshLambertMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.ambient=a.ambient!==void 0?new THREE.Color(a.ambient):new THREE.Color(16777215);this.emissive=a.emissive!==void 0?new THREE.Color(a.emissive):new THREE.Color(0);this.wrapAround=a.wrapAround!==void 0?a.wrapAround:false;this.wrapRGB=new THREE.Vector3(1,1,1);this.map=a.map!==void 0?a.map:null;this.lightMap=a.lightMap!==void 0?a.lightMap:null;this.envMap=
+a.envMap!==void 0?a.envMap:null;this.combine=a.combine!==void 0?a.combine:THREE.MultiplyOperation;this.reflectivity=a.reflectivity!==void 0?a.reflectivity:1;this.refractionRatio=a.refractionRatio!==void 0?a.refractionRatio:0.98;this.fog=a.fog!==void 0?a.fog:true;this.shading=a.shading!==void 0?a.shading:THREE.SmoothShading;this.wireframe=a.wireframe!==void 0?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth!==void 0?a.wireframeLinewidth:1;this.wireframeLinecap=a.wireframeLinecap!==void 0?
+a.wireframeLinecap:"round";this.wireframeLinejoin=a.wireframeLinejoin!==void 0?a.wireframeLinejoin:"round";this.vertexColors=a.vertexColors!==void 0?a.vertexColors:THREE.NoColors;this.skinning=a.skinning!==void 0?a.skinning:false;this.morphTargets=a.morphTargets!==void 0?a.morphTargets:false;this.morphNormals=a.morphNormals!==void 0?a.morphNormals:false};THREE.MeshLambertMaterial.prototype=new THREE.Material;THREE.MeshLambertMaterial.prototype.constructor=THREE.MeshLambertMaterial;
+THREE.MeshPhongMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.ambient=a.ambient!==void 0?new THREE.Color(a.ambient):new THREE.Color(16777215);this.emissive=a.emissive!==void 0?new THREE.Color(a.emissive):new THREE.Color(0);this.specular=a.specular!==void 0?new THREE.Color(a.specular):new THREE.Color(1118481);this.shininess=a.shininess!==void 0?a.shininess:30;this.metal=a.metal!==void 0?a.metal:false;this.perPixel=
+a.perPixel!==void 0?a.perPixel:false;this.wrapAround=a.wrapAround!==void 0?a.wrapAround:false;this.wrapRGB=new THREE.Vector3(1,1,1);this.map=a.map!==void 0?a.map:null;this.lightMap=a.lightMap!==void 0?a.lightMap:null;this.envMap=a.envMap!==void 0?a.envMap:null;this.combine=a.combine!==void 0?a.combine:THREE.MultiplyOperation;this.reflectivity=a.reflectivity!==void 0?a.reflectivity:1;this.refractionRatio=a.refractionRatio!==void 0?a.refractionRatio:0.98;this.fog=a.fog!==void 0?a.fog:true;this.shading=
+a.shading!==void 0?a.shading:THREE.SmoothShading;this.wireframe=a.wireframe!==void 0?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth!==void 0?a.wireframeLinewidth:1;this.wireframeLinecap=a.wireframeLinecap!==void 0?a.wireframeLinecap:"round";this.wireframeLinejoin=a.wireframeLinejoin!==void 0?a.wireframeLinejoin:"round";this.vertexColors=a.vertexColors!==void 0?a.vertexColors:THREE.NoColors;this.skinning=a.skinning!==void 0?a.skinning:false;this.morphTargets=a.morphTargets!==void 0?
+a.morphTargets:false;this.morphNormals=a.morphNormals!==void 0?a.morphNormals:false};THREE.MeshPhongMaterial.prototype=new THREE.Material;THREE.MeshPhongMaterial.prototype.constructor=THREE.MeshPhongMaterial;THREE.MeshDepthMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.shading=a.shading!==void 0?a.shading:THREE.SmoothShading;this.wireframe=a.wireframe!==void 0?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth!==void 0?a.wireframeLinewidth:1};
+THREE.MeshDepthMaterial.prototype=new THREE.Material;THREE.MeshDepthMaterial.prototype.constructor=THREE.MeshDepthMaterial;THREE.MeshNormalMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.shading=a.shading?a.shading:THREE.FlatShading;this.wireframe=a.wireframe?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth?a.wireframeLinewidth:1};THREE.MeshNormalMaterial.prototype=new THREE.Material;THREE.MeshNormalMaterial.prototype.constructor=THREE.MeshNormalMaterial;
+THREE.MeshFaceMaterial=function(){};THREE.ParticleBasicMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.map=a.map!==void 0?a.map:null;this.size=a.size!==void 0?a.size:1;this.sizeAttenuation=a.sizeAttenuation!==void 0?a.sizeAttenuation:true;this.vertexColors=a.vertexColors!==void 0?a.vertexColors:false;this.fog=a.fog!==void 0?a.fog:true};THREE.ParticleBasicMaterial.prototype=new THREE.Material;
+THREE.ParticleBasicMaterial.prototype.constructor=THREE.ParticleBasicMaterial;
+THREE.ShaderMaterial=function(a){THREE.Material.call(this,a);a=a||{};this.fragmentShader=a.fragmentShader!==void 0?a.fragmentShader:"void main() {}";this.vertexShader=a.vertexShader!==void 0?a.vertexShader:"void main() {}";this.uniforms=a.uniforms!==void 0?a.uniforms:{};this.attributes=a.attributes;this.shading=a.shading!==void 0?a.shading:THREE.SmoothShading;this.wireframe=a.wireframe!==void 0?a.wireframe:false;this.wireframeLinewidth=a.wireframeLinewidth!==void 0?a.wireframeLinewidth:1;this.fog=
+a.fog!==void 0?a.fog:false;this.lights=a.lights!==void 0?a.lights:false;this.vertexColors=a.vertexColors!==void 0?a.vertexColors:THREE.NoColors;this.skinning=a.skinning!==void 0?a.skinning:false;this.morphTargets=a.morphTargets!==void 0?a.morphTargets:false;this.morphNormals=a.morphNormals!==void 0?a.morphNormals:false};THREE.ShaderMaterial.prototype=new THREE.Material;THREE.ShaderMaterial.prototype.constructor=THREE.ShaderMaterial;
+THREE.Texture=function(a,b,c,d,e,f,h,i){this.id=THREE.TextureCount++;this.image=a;this.mapping=b!==void 0?b:new THREE.UVMapping;this.wrapS=c!==void 0?c:THREE.ClampToEdgeWrapping;this.wrapT=d!==void 0?d:THREE.ClampToEdgeWrapping;this.magFilter=e!==void 0?e:THREE.LinearFilter;this.minFilter=f!==void 0?f:THREE.LinearMipMapLinearFilter;this.format=h!==void 0?h:THREE.RGBAFormat;this.type=i!==void 0?i:THREE.UnsignedByteType;this.offset=new THREE.Vector2(0,0);this.repeat=new THREE.Vector2(1,1);this.generateMipmaps=
+true;this.needsUpdate=this.premultiplyAlpha=false;this.onUpdate=null};THREE.Texture.prototype={constructor:THREE.Texture,clone:function(){var a=new THREE.Texture(this.image,this.mapping,this.wrapS,this.wrapT,this.magFilter,this.minFilter,this.format,this.type);a.offset.copy(this.offset);a.repeat.copy(this.repeat);return a}};THREE.TextureCount=0;THREE.MultiplyOperation=0;THREE.MixOperation=1;THREE.UVMapping=function(){};THREE.CubeReflectionMapping=function(){};THREE.CubeRefractionMapping=function(){};
+THREE.SphericalReflectionMapping=function(){};THREE.SphericalRefractionMapping=function(){};THREE.RepeatWrapping=0;THREE.ClampToEdgeWrapping=1;THREE.MirroredRepeatWrapping=2;THREE.NearestFilter=3;THREE.NearestMipMapNearestFilter=4;THREE.NearestMipMapLinearFilter=5;THREE.LinearFilter=6;THREE.LinearMipMapNearestFilter=7;THREE.LinearMipMapLinearFilter=8;THREE.ByteType=9;THREE.UnsignedByteType=10;THREE.ShortType=11;THREE.UnsignedShortType=12;THREE.IntType=13;THREE.UnsignedIntType=14;THREE.FloatType=15;
+THREE.AlphaFormat=16;THREE.RGBFormat=17;THREE.RGBAFormat=18;THREE.LuminanceFormat=19;THREE.LuminanceAlphaFormat=20;THREE.DataTexture=function(a,b,c,d,e,f,h,i,l,k){THREE.Texture.call(this,null,f,h,i,l,k,d,e);this.image={data:a,width:b,height:c}};THREE.DataTexture.prototype=new THREE.Texture;THREE.DataTexture.prototype.constructor=THREE.DataTexture;
+THREE.DataTexture.prototype.clone=function(){var a=new THREE.DataTexture(this.image.data,this.image.width,this.image.height,this.format,this.type,this.mapping,this.wrapS,this.wrapT,this.magFilter,this.minFilter);a.offset.copy(this.offset);a.repeat.copy(this.repeat);return a};THREE.Particle=function(a){THREE.Object3D.call(this);this.material=a};THREE.Particle.prototype=new THREE.Object3D;THREE.Particle.prototype.constructor=THREE.Particle;
+THREE.ParticleSystem=function(a,b){THREE.Object3D.call(this);this.geometry=a;this.material=b!==void 0?b:new THREE.ParticleBasicMaterial({color:Math.random()*16777215});this.sortParticles=false;if(this.geometry){this.geometry.boundingSphere||this.geometry.computeBoundingSphere();this.boundRadius=a.boundingSphere.radius}this.frustumCulled=false};THREE.ParticleSystem.prototype=new THREE.Object3D;THREE.ParticleSystem.prototype.constructor=THREE.ParticleSystem;
+THREE.Line=function(a,b,c){THREE.Object3D.call(this);this.geometry=a;this.material=b!==void 0?b:new THREE.LineBasicMaterial({color:Math.random()*16777215});this.type=c!==void 0?c:THREE.LineStrip;this.geometry&&(this.geometry.boundingSphere||this.geometry.computeBoundingSphere())};THREE.LineStrip=0;THREE.LinePieces=1;THREE.Line.prototype=new THREE.Object3D;THREE.Line.prototype.constructor=THREE.Line;
+THREE.Mesh=function(a,b){THREE.Object3D.call(this);this.geometry=a;this.material=b!==void 0?b:new THREE.MeshBasicMaterial({color:Math.random()*16777215,wireframe:true});if(this.geometry){this.geometry.boundingSphere||this.geometry.computeBoundingSphere();this.boundRadius=a.boundingSphere.radius;if(this.geometry.morphTargets.length){this.morphTargetBase=-1;this.morphTargetForcedOrder=[];this.morphTargetInfluences=[];this.morphTargetDictionary={};for(var c=0;c<this.geometry.morphTargets.length;c++){this.morphTargetInfluences.push(0);
+this.morphTargetDictionary[this.geometry.morphTargets[c].name]=c}}}};THREE.Mesh.prototype=new THREE.Object3D;THREE.Mesh.prototype.constructor=THREE.Mesh;THREE.Mesh.prototype.supr=THREE.Object3D.prototype;THREE.Mesh.prototype.getMorphTargetIndexByName=function(a){if(this.morphTargetDictionary[a]!==void 0)return this.morphTargetDictionary[a];console.log("THREE.Mesh.getMorphTargetIndexByName: morph target "+a+" does not exist. Returning 0.");return 0};
+THREE.Ribbon=function(a,b){THREE.Object3D.call(this);this.geometry=a;this.material=b};THREE.Ribbon.prototype=new THREE.Object3D;THREE.Ribbon.prototype.constructor=THREE.Ribbon;THREE.LOD=function(){THREE.Object3D.call(this);this.LODs=[]};THREE.LOD.prototype=new THREE.Object3D;THREE.LOD.prototype.constructor=THREE.LOD;THREE.LOD.prototype.supr=THREE.Object3D.prototype;
+THREE.LOD.prototype.addLevel=function(a,b){b===void 0&&(b=0);for(var b=Math.abs(b),c=0;c<this.LODs.length;c++)if(b<this.LODs[c].visibleAtDistance)break;this.LODs.splice(c,0,{visibleAtDistance:b,object3D:a});this.add(a)};
+THREE.LOD.prototype.update=function(a){if(this.LODs.length>1){a.matrixWorldInverse.getInverse(a.matrixWorld);a=a.matrixWorldInverse;a=-(a.elements[2]*this.matrixWorld.elements[12]+a.elements[6]*this.matrixWorld.elements[13]+a.elements[10]*this.matrixWorld.elements[14]+a.elements[14]);this.LODs[0].object3D.visible=true;for(var b=1;b<this.LODs.length;b++)if(a>=this.LODs[b].visibleAtDistance){this.LODs[b-1].object3D.visible=false;this.LODs[b].object3D.visible=true}else break;for(;b<this.LODs.length;b++)this.LODs[b].object3D.visible=
+false}};
+THREE.Sprite=function(a){THREE.Object3D.call(this);this.color=a.color!==void 0?new THREE.Color(a.color):new THREE.Color(16777215);this.map=a.map!==void 0?a.map:new THREE.Texture;this.blending=a.blending!==void 0?a.blending:THREE.NormalBlending;this.blendSrc=a.blendSrc!==void 0?a.blendSrc:THREE.SrcAlphaFactor;this.blendDst=a.blendDst!==void 0?a.blendDst:THREE.OneMinusSrcAlphaFactor;this.blendEquation=a.blendEquation!==void 0?a.blendEquation:THREE.AddEquation;this.useScreenCoordinates=a.useScreenCoordinates!==void 0?
+a.useScreenCoordinates:true;this.mergeWith3D=a.mergeWith3D!==void 0?a.mergeWith3D:!this.useScreenCoordinates;this.affectedByDistance=a.affectedByDistance!==void 0?a.affectedByDistance:!this.useScreenCoordinates;this.scaleByViewport=a.scaleByViewport!==void 0?a.scaleByViewport:!this.affectedByDistance;this.alignment=a.alignment instanceof THREE.Vector2?a.alignment:THREE.SpriteAlignment.center;this.rotation3d=this.rotation;this.rotation=0;this.opacity=1;this.uvOffset=new THREE.Vector2(0,0);this.uvScale=
+new THREE.Vector2(1,1)};THREE.Sprite.prototype=new THREE.Object3D;THREE.Sprite.prototype.constructor=THREE.Sprite;THREE.Sprite.prototype.updateMatrix=function(){this.matrix.setPosition(this.position);this.rotation3d.set(0,0,this.rotation);this.matrix.setRotationFromEuler(this.rotation3d);if(this.scale.x!==1||this.scale.y!==1){this.matrix.scale(this.scale);this.boundRadiusScale=Math.max(this.scale.x,this.scale.y)}this.matrixWorldNeedsUpdate=true};THREE.SpriteAlignment={};
+THREE.SpriteAlignment.topLeft=new THREE.Vector2(1,-1);THREE.SpriteAlignment.topCenter=new THREE.Vector2(0,-1);THREE.SpriteAlignment.topRight=new THREE.Vector2(-1,-1);THREE.SpriteAlignment.centerLeft=new THREE.Vector2(1,0);THREE.SpriteAlignment.center=new THREE.Vector2(0,0);THREE.SpriteAlignment.centerRight=new THREE.Vector2(-1,0);THREE.SpriteAlignment.bottomLeft=new THREE.Vector2(1,1);THREE.SpriteAlignment.bottomCenter=new THREE.Vector2(0,1);
+THREE.SpriteAlignment.bottomRight=new THREE.Vector2(-1,1);THREE.Scene=function(){THREE.Object3D.call(this);this.overrideMaterial=this.fog=null;this.matrixAutoUpdate=false;this.__objects=[];this.__lights=[];this.__objectsAdded=[];this.__objectsRemoved=[]};THREE.Scene.prototype=new THREE.Object3D;THREE.Scene.prototype.constructor=THREE.Scene;
+THREE.Scene.prototype.__addObject=function(a){if(a instanceof THREE.Light)this.__lights.indexOf(a)===-1&&this.__lights.push(a);else if(!(a instanceof THREE.Camera)&&this.__objects.indexOf(a)===-1){this.__objects.push(a);this.__objectsAdded.push(a);var b=this.__objectsRemoved.indexOf(a);b!==-1&&this.__objectsRemoved.splice(b,1)}for(b=0;b<a.children.length;b++)this.__addObject(a.children[b])};
+THREE.Scene.prototype.__removeObject=function(a){if(a instanceof THREE.Light){var b=this.__lights.indexOf(a);b!==-1&&this.__lights.splice(b,1)}else if(!(a instanceof THREE.Camera)){b=this.__objects.indexOf(a);if(b!==-1){this.__objects.splice(b,1);this.__objectsRemoved.push(a);b=this.__objectsAdded.indexOf(a);b!==-1&&this.__objectsAdded.splice(b,1)}}for(b=0;b<a.children.length;b++)this.__removeObject(a.children[b])};
+THREE.Fog=function(a,b,c){this.color=new THREE.Color(a);this.near=b!==void 0?b:1;this.far=c!==void 0?c:1E3};THREE.FogExp2=function(a,b){this.color=new THREE.Color(a);this.density=b!==void 0?b:2.5E-4};
+THREE.ShaderChunk={fog_pars_fragment:"#ifdef USE_FOG\nuniform vec3 fogColor;\n#ifdef FOG_EXP2\nuniform float fogDensity;\n#else\nuniform float fogNear;\nuniform float fogFar;\n#endif\n#endif",fog_fragment:"#ifdef USE_FOG\nfloat depth = gl_FragCoord.z / gl_FragCoord.w;\n#ifdef FOG_EXP2\nconst float LOG2 = 1.442695;\nfloat fogFactor = exp2( - fogDensity * fogDensity * depth * depth * LOG2 );\nfogFactor = 1.0 - clamp( fogFactor, 0.0, 1.0 );\n#else\nfloat fogFactor = smoothstep( fogNear, fogFar, depth );\n#endif\ngl_FragColor = mix( gl_FragColor, vec4( fogColor, gl_FragColor.w ), fogFactor );\n#endif",envmap_pars_fragment:"#ifdef USE_ENVMAP\nvarying vec3 vReflect;\nuniform float reflectivity;\nuniform samplerCube envMap;\nuniform float flipEnvMap;\nuniform int combine;\n#endif",
+envmap_fragment:"#ifdef USE_ENVMAP\n#ifdef DOUBLE_SIDED\nfloat flipNormal = ( -1.0 + 2.0 * float( gl_FrontFacing ) );\nvec4 cubeColor = textureCube( envMap, flipNormal * vec3( flipEnvMap * vReflect.x, vReflect.yz ) );\n#else\nvec4 cubeColor = textureCube( envMap, vec3( flipEnvMap * vReflect.x, vReflect.yz ) );\n#endif\n#ifdef GAMMA_INPUT\ncubeColor.xyz *= cubeColor.xyz;\n#endif\nif ( combine == 1 ) {\ngl_FragColor.xyz = mix( gl_FragColor.xyz, cubeColor.xyz, reflectivity );\n} else {\ngl_FragColor.xyz = gl_FragColor.xyz * cubeColor.xyz;\n}\n#endif",
+envmap_pars_vertex:"#ifdef USE_ENVMAP\nvarying vec3 vReflect;\nuniform float refractionRatio;\nuniform bool useRefract;\n#endif",envmap_vertex:"#ifdef USE_ENVMAP\nvec4 mPosition = objectMatrix * vec4( position, 1.0 );\nvec3 nWorld = mat3( objectMatrix[ 0 ].xyz, objectMatrix[ 1 ].xyz, objectMatrix[ 2 ].xyz ) * normal;\nif ( useRefract ) {\nvReflect = refract( normalize( mPosition.xyz - cameraPosition ), normalize( nWorld.xyz ), refractionRatio );\n} else {\nvReflect = reflect( normalize( mPosition.xyz - cameraPosition ), normalize( nWorld.xyz ) );\n}\n#endif",
+map_particle_pars_fragment:"#ifdef USE_MAP\nuniform sampler2D map;\n#endif",map_particle_fragment:"#ifdef USE_MAP\ngl_FragColor = gl_FragColor * texture2D( map, gl_PointCoord );\n#endif",map_pars_vertex:"#ifdef USE_MAP\nvarying vec2 vUv;\nuniform vec4 offsetRepeat;\n#endif",map_pars_fragment:"#ifdef USE_MAP\nvarying vec2 vUv;\nuniform sampler2D map;\n#endif",map_vertex:"#ifdef USE_MAP\nvUv = uv * offsetRepeat.zw + offsetRepeat.xy;\n#endif",map_fragment:"#ifdef USE_MAP\n#ifdef GAMMA_INPUT\nvec4 texelColor = texture2D( map, vUv );\ntexelColor.xyz *= texelColor.xyz;\ngl_FragColor = gl_FragColor * texelColor;\n#else\ngl_FragColor = gl_FragColor * texture2D( map, vUv );\n#endif\n#endif",
+lightmap_pars_fragment:"#ifdef USE_LIGHTMAP\nvarying vec2 vUv2;\nuniform sampler2D lightMap;\n#endif",lightmap_pars_vertex:"#ifdef USE_LIGHTMAP\nvarying vec2 vUv2;\n#endif",lightmap_fragment:"#ifdef USE_LIGHTMAP\ngl_FragColor = gl_FragColor * texture2D( lightMap, vUv2 );\n#endif",lightmap_vertex:"#ifdef USE_LIGHTMAP\nvUv2 = uv2;\n#endif",lights_lambert_pars_vertex:"uniform vec3 ambient;\nuniform vec3 diffuse;\nuniform vec3 emissive;\nuniform vec3 ambientLightColor;\n#if MAX_DIR_LIGHTS > 0\nuniform vec3 directionalLightColor[ MAX_DIR_LIGHTS ];\nuniform vec3 directionalLightDirection[ MAX_DIR_LIGHTS ];\n#endif\n#if MAX_POINT_LIGHTS > 0\nuniform vec3 pointLightColor[ MAX_POINT_LIGHTS ];\nuniform vec3 pointLightPosition[ MAX_POINT_LIGHTS ];\nuniform float pointLightDistance[ MAX_POINT_LIGHTS ];\n#endif\n#if MAX_SPOT_LIGHTS > 0\nuniform vec3 spotLightColor[ MAX_SPOT_LIGHTS ];\nuniform vec3 spotLightPosition[ MAX_SPOT_LIGHTS ];\nuniform vec3 spotLightDirection[ MAX_SPOT_LIGHTS ];\nuniform
float spotLightDistance[ MAX_SPOT_LIGHTS ];\nuniform float spotLightAngle[ MAX_SPOT_LIGHTS ];\nuniform float spotLightExponent[ MAX_SPOT_LIGHTS ];\n#endif\n#ifdef WRAP_AROUND\nuniform vec3 wrapRGB;\n#endif",
+lights_lambert_vertex:"vLightFront = vec3( 0.0 );\n#ifdef DOUBLE_SIDED\nvLightBack = vec3( 0.0 );\n#endif\ntransformedNormal = normalize( transformedNormal );\n#if MAX_DIR_LIGHTS > 0\nfor( int i = 0; i < MAX_DIR_LIGHTS; i ++ ) {\nvec4 lDirection = viewMatrix * vec4( directionalLightDirection[ i ], 0.0 );\nvec3 dirVector = normalize( lDirection.xyz );\nfloat dotProduct = dot( transformedNormal, dirVector );\nvec3 directionalLightWeighting = vec3( max( dotProduct, 0.0 ) );\n#ifdef DOUBLE_SIDED\nvec3 directionalLightWeightingBack = vec3( max( -dotProduct, 0.0 ) );\n#ifdef WRAP_AROUND\nvec3 directionalLightWeightingHalfBack = vec3( max( -0.5 * dotProduct + 0.5, 0.0 ) );\n#endif\n#endif\n#ifdef WRAP_AROUND\nvec3 directionalLightWeightingHalf = vec3( max( 0.5 * dotProduct + 0.5, 0.0 ) );\ndirectionalLightWeighting = mix( directionalLightWeighting, directionalLightWeightingHalf, wrapRGB );\n#ifdef DOUBLE_SIDED\ndirectionalLightWeightingBack = mix( directionalLightWeightingBack, directional
LightWeightingHalfBack, wrapRGB );\n#endif\n#endif\nvLightFront += directionalLightColor[ i ] * directionalLightWeighting;\n#ifdef DOUBLE_SIDED\nvLightBack += directionalLightColor[ i ] * directionalLightWeightingBack;\n#endif\n}\n#endif\n#if MAX_POINT_LIGHTS > 0\nfor( int i = 0; i < MAX_POINT_LIGHTS; i ++ ) {\nvec4 lPosition = viewMatrix * vec4( pointLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz - mvPosition.xyz;\nfloat lDistance = 1.0;\nif ( pointLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / pointLightDistance[ i ] ), 1.0 );\nlVector = normalize( lVector );\nfloat dotProduct = dot( transformedNormal, lVector );\nvec3 pointLightWeighting = vec3( max( dotProduct, 0.0 ) );\n#ifdef DOUBLE_SIDED\nvec3 pointLightWeightingBack = vec3( max( -dotProduct, 0.0 ) );\n#ifdef WRAP_AROUND\nvec3 pointLightWeightingHalfBack = vec3( max( -0.5 * dotProduct + 0.5, 0.0 ) );\n#endif\n#endif\n#ifdef WRAP_AROUND\nvec3 pointLightWeightingHalf = vec3( max( 0.5 * dotPro
duct + 0.5, 0.0 ) );\npointLightWeighting = mix( pointLightWeighting, pointLightWeightingHalf, wrapRGB );\n#ifdef DOUBLE_SIDED\npointLightWeightingBack = mix( pointLightWeightingBack, pointLightWeightingHalfBack, wrapRGB );\n#endif\n#endif\nvLightFront += pointLightColor[ i ] * pointLightWeighting * lDistance;\n#ifdef DOUBLE_SIDED\nvLightBack += pointLightColor[ i ] * pointLightWeightingBack * lDistance;\n#endif\n}\n#endif\n#if MAX_SPOT_LIGHTS > 0\nfor( int i = 0; i < MAX_SPOT_LIGHTS; i ++ ) {\nvec4 lPosition = viewMatrix * vec4( spotLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz - mvPosition.xyz;\nlVector = normalize( lVector );\nfloat spotEffect = dot( spotLightDirection[ i ], normalize( spotLightPosition[ i ] - mPosition.xyz ) );\nif ( spotEffect > spotLightAngle[ i ] ) {\nspotEffect = pow( spotEffect, spotLightExponent[ i ] );\nfloat lDistance = 1.0;\nif ( spotLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / spotLightDistance[ i ] ), 1.0 );\nflo
at dotProduct = dot( transformedNormal, lVector );\nvec3 spotLightWeighting = vec3( max( dotProduct, 0.0 ) );\n#ifdef DOUBLE_SIDED\nvec3 spotLightWeightingBack = vec3( max( -dotProduct, 0.0 ) );\n#ifdef WRAP_AROUND\nvec3 spotLightWeightingHalfBack = vec3( max( -0.5 * dotProduct + 0.5, 0.0 ) );\n#endif\n#endif\n#ifdef WRAP_AROUND\nvec3 spotLightWeightingHalf = vec3( max( 0.5 * dotProduct + 0.5, 0.0 ) );\nspotLightWeighting = mix( spotLightWeighting, spotLightWeightingHalf, wrapRGB );\n#ifdef DOUBLE_SIDED\nspotLightWeightingBack = mix( spotLightWeightingBack, spotLightWeightingHalfBack, wrapRGB );\n#endif\n#endif\nvLightFront += spotLightColor[ i ] * spotLightWeighting * lDistance * spotEffect;\n#ifdef DOUBLE_SIDED\nvLightBack += spotLightColor[ i ] * spotLightWeightingBack * lDistance * spotEffect;\n#endif\n}\n}\n#endif\nvLightFront = vLightFront * diffuse + ambient * ambientLightColor + emissive;\n#ifdef DOUBLE_SIDED\nvLightBack = vLightBack * diffuse + ambient * ambientLightColor +
emissive;\n#endif",
+lights_phong_pars_vertex:"#ifndef PHONG_PER_PIXEL\n#if MAX_POINT_LIGHTS > 0\nuniform vec3 pointLightPosition[ MAX_POINT_LIGHTS ];\nuniform float pointLightDistance[ MAX_POINT_LIGHTS ];\nvarying vec4 vPointLight[ MAX_POINT_LIGHTS ];\n#endif\n#if MAX_SPOT_LIGHTS > 0\nuniform vec3 spotLightPosition[ MAX_SPOT_LIGHTS ];\nuniform float spotLightDistance[ MAX_SPOT_LIGHTS ];\nvarying vec4 vSpotLight[ MAX_SPOT_LIGHTS ];\n#endif\n#endif\n#if MAX_SPOT_LIGHTS > 0\nvarying vec3 vWorldPosition;\n#endif",lights_phong_vertex:"#ifndef PHONG_PER_PIXEL\n#if MAX_POINT_LIGHTS > 0\nfor( int i = 0; i < MAX_POINT_LIGHTS; i ++ ) {\nvec4 lPosition = viewMatrix * vec4( pointLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz - mvPosition.xyz;\nfloat lDistance = 1.0;\nif ( pointLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / pointLightDistance[ i ] ), 1.0 );\nvPointLight[ i ] = vec4( lVector, lDistance );\n}\n#endif\n#if MAX_SPOT_LIGHTS > 0\nfor( int i = 0; i < MAX_SPOT_LIGHTS; i
++ ) {\nvec4 lPosition = viewMatrix * vec4( spotLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz - mvPosition.xyz;\nfloat lDistance = 1.0;\nif ( spotLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / spotLightDistance[ i ] ), 1.0 );\nvSpotLight[ i ] = vec4( lVector, lDistance );\n}\n#endif\n#endif\n#if MAX_SPOT_LIGHTS > 0\nvWorldPosition = mPosition.xyz;\n#endif",
+lights_phong_pars_fragment:"uniform vec3 ambientLightColor;\n#if MAX_DIR_LIGHTS > 0\nuniform vec3 directionalLightColor[ MAX_DIR_LIGHTS ];\nuniform vec3 directionalLightDirection[ MAX_DIR_LIGHTS ];\n#endif\n#if MAX_POINT_LIGHTS > 0\nuniform vec3 pointLightColor[ MAX_POINT_LIGHTS ];\n#ifdef PHONG_PER_PIXEL\nuniform vec3 pointLightPosition[ MAX_POINT_LIGHTS ];\nuniform float pointLightDistance[ MAX_POINT_LIGHTS ];\n#else\nvarying vec4 vPointLight[ MAX_POINT_LIGHTS ];\n#endif\n#endif\n#if MAX_SPOT_LIGHTS > 0\nuniform vec3 spotLightColor[ MAX_SPOT_LIGHTS ];\nuniform vec3 spotLightPosition[ MAX_SPOT_LIGHTS ];\nuniform vec3 spotLightDirection[ MAX_SPOT_LIGHTS ];\nuniform float spotLightAngle[ MAX_SPOT_LIGHTS ];\nuniform float spotLightExponent[ MAX_SPOT_LIGHTS ];\n#ifdef PHONG_PER_PIXEL\nuniform float spotLightDistance[ MAX_SPOT_LIGHTS ];\n#else\nvarying vec4 vSpotLight[ MAX_SPOT_LIGHTS ];\n#endif\nvarying vec3 vWorldPosition;\n#endif\n#ifdef WRAP_AROUND\nuniform vec3 wrapRGB;\n#endif\nva
rying vec3 vViewPosition;\nvarying vec3 vNormal;",
+lights_phong_fragment:"vec3 normal = normalize( vNormal );\nvec3 viewPosition = normalize( vViewPosition );\n#ifdef DOUBLE_SIDED\nnormal = normal * ( -1.0 + 2.0 * float( gl_FrontFacing ) );\n#endif\n#if MAX_POINT_LIGHTS > 0\nvec3 pointDiffuse = vec3( 0.0 );\nvec3 pointSpecular = vec3( 0.0 );\nfor ( int i = 0; i < MAX_POINT_LIGHTS; i ++ ) {\n#ifdef PHONG_PER_PIXEL\nvec4 lPosition = viewMatrix * vec4( pointLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz + vViewPosition.xyz;\nfloat lDistance = 1.0;\nif ( pointLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / pointLightDistance[ i ] ), 1.0 );\nlVector = normalize( lVector );\n#else\nvec3 lVector = normalize( vPointLight[ i ].xyz );\nfloat lDistance = vPointLight[ i ].w;\n#endif\nfloat dotProduct = dot( normal, lVector );\n#ifdef WRAP_AROUND\nfloat pointDiffuseWeightFull = max( dotProduct, 0.0 );\nfloat pointDiffuseWeightHalf = max( 0.5 * dotProduct + 0.5, 0.0 );\nvec3 pointDiffuseWeight = mix( vec3 ( poi
ntDiffuseWeightFull ), vec3( pointDiffuseWeightHalf ), wrapRGB );\n#else\nfloat pointDiffuseWeight = max( dotProduct, 0.0 );\n#endif\npointDiffuse += diffuse * pointLightColor[ i ] * pointDiffuseWeight * lDistance;\nvec3 pointHalfVector = normalize( lVector + viewPosition );\nfloat pointDotNormalHalf = max( dot( normal, pointHalfVector ), 0.0 );\nfloat pointSpecularWeight = max( pow( pointDotNormalHalf, shininess ), 0.0 );\n#ifdef PHYSICALLY_BASED_SHADING\nfloat specularNormalization = ( shininess + 2.0001 ) / 8.0;\nvec3 schlick = specular + vec3( 1.0 - specular ) * pow( 1.0 - dot( lVector, pointHalfVector ), 5.0 );\npointSpecular += schlick * pointLightColor[ i ] * pointSpecularWeight * pointDiffuseWeight * lDistance * specularNormalization;\n#else\npointSpecular += specular * pointLightColor[ i ] * pointSpecularWeight * pointDiffuseWeight * lDistance;\n#endif\n}\n#endif\n#if MAX_SPOT_LIGHTS > 0\nvec3 spotDiffuse = vec3( 0.0 );\nvec3 spotSpecular = vec3( 0.0 );\nfor ( int i = 0;
i < MAX_SPOT_LIGHTS; i ++ ) {\n#ifdef PHONG_PER_PIXEL\nvec4 lPosition = viewMatrix * vec4( spotLightPosition[ i ], 1.0 );\nvec3 lVector = lPosition.xyz + vViewPosition.xyz;\nfloat lDistance = 1.0;\nif ( spotLightDistance[ i ] > 0.0 )\nlDistance = 1.0 - min( ( length( lVector ) / spotLightDistance[ i ] ), 1.0 );\nlVector = normalize( lVector );\n#else\nvec3 lVector = normalize( vSpotLight[ i ].xyz );\nfloat lDistance = vSpotLight[ i ].w;\n#endif\nfloat spotEffect = dot( spotLightDirection[ i ], normalize( spotLightPosition[ i ] - vWorldPosition ) );\nif ( spotEffect > spotLightAngle[ i ] ) {\nspotEffect = pow( spotEffect, spotLightExponent[ i ] );\nfloat dotProduct = dot( normal, lVector );\n#ifdef WRAP_AROUND\nfloat spotDiffuseWeightFull = max( dotProduct, 0.0 );\nfloat spotDiffuseWeightHalf = max( 0.5 * dotProduct + 0.5, 0.0 );\nvec3 spotDiffuseWeight = mix( vec3 ( spotDiffuseWeightFull ), vec3( spotDiffuseWeightHalf ), wrapRGB );\n#else\nfloat spotDiffuseWeight = max( dotProduct,
0.0 );\n#endif\nspotDiffuse += diffuse * spotLightColor[ i ] * spotDiffuseWeight * lDistance * spotEffect;\nvec3 spotHalfVector = normalize( lVector + viewPosition );\nfloat spotDotNormalHalf = max( dot( normal, spotHalfVector ), 0.0 );\nfloat spotSpecularWeight = max( pow( spotDotNormalHalf, shininess ), 0.0 );\n#ifdef PHYSICALLY_BASED_SHADING\nfloat specularNormalization = ( shininess + 2.0001 ) / 8.0;\nvec3 schlick = specular + vec3( 1.0 - specular ) * pow( 1.0 - dot( lVector, spotHalfVector ), 5.0 );\nspotSpecular += schlick * spotLightColor[ i ] * spotSpecularWeight * spotDiffuseWeight * lDistance * specularNormalization * spotEffect;\n#else\nspotSpecular += specular * spotLightColor[ i ] * spotSpecularWeight * spotDiffuseWeight * lDistance * spotEffect;\n#endif\n}\n}\n#endif\n#if MAX_DIR_LIGHTS > 0\nvec3 dirDiffuse = vec3( 0.0 );\nvec3 dirSpecular = vec3( 0.0 );\nfor( int i = 0; i < MAX_DIR_LIGHTS; i ++ ) {\nvec4 lDirection = viewMatrix * vec4( directionalLightDirection[ i ],
0.0 );\nvec3 dirVector = normalize( lDirection.xyz );\nfloat dotProduct = dot( normal, dirVector );\n#ifdef WRAP_AROUND\nfloat dirDiffuseWeightFull = max( dotProduct, 0.0 );\nfloat dirDiffuseWeightHalf = max( 0.5 * dotProduct + 0.5, 0.0 );\nvec3 dirDiffuseWeight = mix( vec3( dirDiffuseWeightFull ), vec3( dirDiffuseWeightHalf ), wrapRGB );\n#else\nfloat dirDiffuseWeight = max( dotProduct, 0.0 );\n#endif\ndirDiffuse += diffuse * directionalLightColor[ i ] * dirDiffuseWeight;\nvec3 dirHalfVector = normalize( dirVector + viewPosition );\nfloat dirDotNormalHalf = max( dot( normal, dirHalfVector ), 0.0 );\nfloat dirSpecularWeight = max( pow( dirDotNormalHalf, shininess ), 0.0 );\n#ifdef PHYSICALLY_BASED_SHADING\nfloat specularNormalization = ( shininess + 2.0001 ) / 8.0;\nvec3 schlick = specular + vec3( 1.0 - specular ) * pow( 1.0 - dot( dirVector, dirHalfVector ), 5.0 );\ndirSpecular += schlick * directionalLightColor[ i ] * dirSpecularWeight * dirDiffuseWeight * specularNormalization;
\n#else\ndirSpecular += specular * directionalLightColor[ i ] * dirSpecularWeight * dirDiffuseWeight;\n#endif\n}\n#endif\nvec3 totalDiffuse = vec3( 0.0 );\nvec3 totalSpecular = vec3( 0.0 );\n#if MAX_DIR_LIGHTS > 0\ntotalDiffuse += dirDiffuse;\ntotalSpecular += dirSpecular;\n#endif\n#if MAX_POINT_LIGHTS > 0\ntotalDiffuse += pointDiffuse;\ntotalSpecular += pointSpecular;\n#endif\n#if MAX_SPOT_LIGHTS > 0\ntotalDiffuse += spotDiffuse;\ntotalSpecular += spotSpecular;\n#endif\n#ifdef METAL\ngl_FragColor.xyz = gl_FragColor.xyz * ( emissive + totalDiffuse + ambientLightColor * ambient + totalSpecular );\n#else\ngl_FragColor.xyz = gl_FragColor.xyz * ( emissive + totalDiffuse + ambientLightColor * ambient ) + totalSpecular;\n#endif",
+color_pars_fragment:"#ifdef USE_COLOR\nvarying vec3 vColor;\n#endif",color_fragment:"#ifdef USE_COLOR\ngl_FragColor = gl_FragColor * vec4( vColor, opacity );\n#endif",color_pars_vertex:"#ifdef USE_COLOR\nvarying vec3 vColor;\n#endif",color_vertex:"#ifdef USE_COLOR\n#ifdef GAMMA_INPUT\nvColor = color * color;\n#else\nvColor = color;\n#endif\n#endif",skinning_pars_vertex:"#ifdef USE_SKINNING\nuniform mat4 boneGlobalMatrices[ MAX_BONES ];\n#endif",skinning_vertex:"#ifdef USE_SKINNING\ngl_Position = ( boneGlobalMatrices[ int( skinIndex.x ) ] * skinVertexA ) * skinWeight.x;\ngl_Position += ( boneGlobalMatrices[ int( skinIndex.y ) ] * skinVertexB ) * skinWeight.y;\ngl_Position = projectionMatrix * modelViewMatrix * gl_Position;\n#endif",
+morphtarget_pars_vertex:"#ifdef USE_MORPHTARGETS\n#ifndef USE_MORPHNORMALS\nuniform float morphTargetInfluences[ 8 ];\n#else\nuniform float morphTargetInfluences[ 4 ];\n#endif\n#endif",morphtarget_vertex:"#ifdef USE_MORPHTARGETS\nvec3 morphed = vec3( 0.0 );\nmorphed += ( morphTarget0 - position ) * morphTargetInfluences[ 0 ];\nmorphed += ( morphTarget1 - position ) * morphTargetInfluences[ 1 ];\nmorphed += ( morphTarget2 - position ) * morphTargetInfluences[ 2 ];\nmorphed += ( morphTarget3 - position ) * morphTargetInfluences[ 3 ];\n#ifndef USE_MORPHNORMALS\nmorphed += ( morphTarget4 - position ) * morphTargetInfluences[ 4 ];\nmorphed += ( morphTarget5 - position ) * morphTargetInfluences[ 5 ];\nmorphed += ( morphTarget6 - position ) * morphTargetInfluences[ 6 ];\nmorphed += ( morphTarget7 - position ) * morphTargetInfluences[ 7 ];\n#endif\nmorphed += position;\ngl_Position = projectionMatrix * modelViewMatrix * vec4( morphed, 1.0 );\n#endif",
+default_vertex:"#ifndef USE_MORPHTARGETS\n#ifndef USE_SKINNING\ngl_Position = projectionMatrix * mvPosition;\n#endif\n#endif",morphnormal_vertex:"#ifdef USE_MORPHNORMALS\nvec3 morphedNormal = vec3( 0.0 );\nm
<TRUNCATED>
[3/8] airavata-php-gateway git commit: adding datacat web browser
initial files
Posted by sc...@apache.org.
adding datacat web browser initial files
Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/bac76ae5
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/bac76ae5
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/bac76ae5
Branch: refs/heads/develop
Commit: bac76ae50087fe8c66604ee6e54628d2da9a884c
Parents: e675d4d
Author: scnakandala <su...@gmail.com>
Authored: Wed Jan 27 15:08:16 2016 -0500
Committer: scnakandala <su...@gmail.com>
Committed: Wed Jan 27 15:08:16 2016 -0500
----------------------------------------------------------------------
app/controllers/DataCatController.php | 16 +
app/routes.php | 5 +
app/views/datacat/select.blade.php | 80 ++
public/js/datacat/GLmol.js | 1708 ++++++++++++++++++++++++++++
public/js/datacat/Three.js | 382 +++++++
public/js/datacat/jquery-1.7.min.js | 4 +
6 files changed, 2195 insertions(+)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/app/controllers/DataCatController.php
----------------------------------------------------------------------
diff --git a/app/controllers/DataCatController.php b/app/controllers/DataCatController.php
new file mode 100755
index 0000000..fb821f6
--- /dev/null
+++ b/app/controllers/DataCatController.php
@@ -0,0 +1,16 @@
+<?php
+
+class DataCatController extends BaseController
+{
+
+ public function select()
+ {
+ $results = json_decode(file_get_contents('http://localhost:9000/query-api/select?q=sddslfnlsdf'), true);
+ if(!isset($results) || empty($results)){
+ $results = array();
+ }
+// var_dump($results);exit;
+ return View::make('datacat/select', array("results" => $results));
+ }
+
+}
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/app/routes.php
----------------------------------------------------------------------
diff --git a/app/routes.php b/app/routes.php
index a180cba..e183220 100755
--- a/app/routes.php
+++ b/app/routes.php
@@ -204,6 +204,11 @@ Route::post("gp/remove-sr", "GatewayprofileController@delete");
Route::post("gp/credential-store-token-change", "GatewayprofileController@cstChange");
+
+//DataCat
+Route::get("datacat/select", "DataCatController@select");
+
+
//Management Dashboard
Route::get("admin/dashboard", "AdminController@dashboard");
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/app/views/datacat/select.blade.php
----------------------------------------------------------------------
diff --git a/app/views/datacat/select.blade.php b/app/views/datacat/select.blade.php
new file mode 100755
index 0000000..ada2902
--- /dev/null
+++ b/app/views/datacat/select.blade.php
@@ -0,0 +1,80 @@
+@extends('layout.basic')
+{{ HTML::script('js/datacat/jquery-1.7.min.js')}}
+{{ HTML::script('js/datacat/Three.js')}}
+{{ HTML::script('js/datacat/GLmol.js')}}
+
+@section('page-header')
+ @parent
+@stop
+@section('content')
+ <div class="container" style="max-width: 80%;">
+ @if ( isset($results))
+ @if (sizeof($results) != 0)
+ <div id="re" class="table-responsive">
+ <table class="table">
+ <tr>
+ <th>FinalGeom</th>
+ <th>Formula</th>
+ <th>Energy</th>
+ <th>ZPE</th>
+ <th>CalcType</th>
+ <th>Methods</th>
+ <th>Basis</th>
+ <th>Enthalpy</th>
+ <th>Gibbs</th>
+ <th>NImag</th>
+ <th>CodeVersion</th>
+ </tr>
+ @foreach($results as $key=>$result)
+ @if(isset($result['Formula']))
+ <tr>
+ <td>
+ <div id="mol_{{$key}}" style="width: 100px; height: 100px; background-color: black;"></div>
+ @if(isset($result['PDB']))
+ <textarea id="mol_{{$key}}_src" style="display: none;">{{$result['PDB']}}</textarea>
+ <script type="text/javascript">
+ $( document ).ready(function() {
+ var mol_{{$key}} = new GLmol('mol_{{$key}}', true);
+
+ mol_{{$key}}.defineRepresentation = function () {
+ var all = this.getAllAtoms();
+ var hetatm = this.removeSolvents(this.getHetatms(all));
+ this.colorByAtom(all, {});
+ this.colorByChain(all);
+ var asu = new THREE.Object3D();
+
+ this.drawBondsAsStick(asu, hetatm, this.cylinderRadius, this.cylinderRadius);
+ this.drawBondsAsStick(asu, this.getResiduesById(this.getSidechains(this.getChain(all, ['A'])), [58, 87]),
+ this.cylinderRadius, this.cylinderRadius);
+ this.drawBondsAsStick(asu, this.getResiduesById(this.getSidechains(this.getChain(all, ['B'])), [63, 92]),
+ this.cylinderRadius, this.cylinderRadius);
+ this.drawCartoon(asu, all, this.curveWidth, this.thickness);
+
+ this.drawSymmetryMates2(this.modelGroup, asu, this.protein.biomtMatrices);
+ this.modelGroup.add(asu);
+ };
+
+ mol_{{$key}}.loadMolecule();
+ });
+ </script>
+ @endif
+ </td>
+ <td>@if(isset($result['Formula']))<a>{{$result['Formula']}}</a>@endif</td>
+ <td>@if(isset($result['Energy'])){{$result['Energy']}}@endif</td>
+ <td>@if(isset($result['ZPE'])){{$result['ZPE']}}@endif</td>
+ <td>@if(isset($result['CalcType'])){{$result['CalcType']}}@endif</td>
+ <td>@if(isset($result['Methods'])){{$result['Methods']}}@endif</td>
+ <td>@if(isset($result['Basis'])){{$result['Basis']}}@endif</td>
+ <td>@if(isset($result['Enthalpy'])){{$result['Enthalpy']}}@endif</td>
+ <td>@if(isset($result['Gibbs'])){{$result['Gibbs']}}@endif</td>
+ <td>@if(isset($result['NImag'])){{$result['NImag']}}@endif</td>
+ <td>@if(isset($result['CodeVersion'])){{$result['CodeVersion']}}@endif</td>
+ </tr>
+ @endif
+ @endforeach
+ </table>
+ </div>
+ @endif
+ @endif
+ </div>
+@stop
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/bac76ae5/public/js/datacat/GLmol.js
----------------------------------------------------------------------
diff --git a/public/js/datacat/GLmol.js b/public/js/datacat/GLmol.js
new file mode 100644
index 0000000..9af612b
--- /dev/null
+++ b/public/js/datacat/GLmol.js
@@ -0,0 +1,1708 @@
+/*
+ GLmol - Molecular Viewer on WebGL/Javascript (0.47)
+ (C) Copyright 2011-2012, biochem_fan
+ License: dual license of MIT or LGPL3
+
+ Contributors:
+ Robert Hanson for parseXYZ, deferred instantiation
+
+ This program uses
+ Three.js
+ https://github.com/mrdoob/three.js
+ Copyright (c) 2010-2012 three.js Authors. All rights reserved.
+ jQuery
+ http://jquery.org/
+ Copyright (c) 2011 John Resig
+ */
+
+// Workaround for Intel GMA series (gl_FrontFacing causes compilation error)
+THREE.ShaderLib.lambert.fragmentShader = THREE.ShaderLib.lambert.fragmentShader.replace("gl_FrontFacing", "true");
+THREE.ShaderLib.lambert.vertexShader = THREE.ShaderLib.lambert.vertexShader.replace(/\}$/, "#ifdef DOUBLE_SIDED\n if (transformedNormal.z < 0.0) vLightFront = vLightBack;\n #endif\n }");
+
+var TV3 = THREE.Vector3, TF3 = THREE.Face3, TCo = THREE.Color;
+
+THREE.Geometry.prototype.colorAll = function (color) {
+ for (var i = 0; i < this.faces.length; i++) {
+ this.faces[i].color = color;
+ }
+};
+
+THREE.Matrix4.prototype.isIdentity = function() {
+ for (var i = 0; i < 4; i++)
+ for (var j = 0; j < 4; j++)
+ if (this.elements[i * 4 + j] != (i == j) ? 1 : 0) return false;
+ return true;
+};
+
+var GLmol = (function() {
+function GLmol(id, suppressAutoload) {
+ if (id) this.create(id, suppressAutoload);
+ return true;
+}
+
+GLmol.prototype.create = function(id, suppressAutoload) {
+ this.Nucleotides = [' G', ' A', ' T', ' C', ' U', ' DG', ' DA', ' DT', ' DC', ' DU'];
+ this.ElementColors = {"H": 0xCCCCCC, "C": 0xAAAAAA, "O": 0xCC0000, "N": 0x0000CC, "S": 0xCCCC00, "P": 0x6622CC,
+ "F": 0x00CC00, "CL": 0x00CC00, "BR": 0x882200, "I": 0x6600AA,
+ "FE": 0xCC6600, "CA": 0x8888AA};
+// Reference: A. Bondi, J. Phys. Chem., 1964, 68, 441.
+ this.vdwRadii = {"H": 1.2, "Li": 1.82, "Na": 2.27, "K": 2.75, "C": 1.7, "N": 1.55, "O": 1.52,
+ "F": 1.47, "P": 1.80, "S": 1.80, "CL": 1.75, "BR": 1.85, "SE": 1.90,
+ "ZN": 1.39, "CU": 1.4, "NI": 1.63};
+
+ this.id = id;
+ this.aaScale = 1; // or 2
+
+ this.container = $('#' + this.id);
+ this.WIDTH = this.container.width() * this.aaScale, this.HEIGHT = this.container.height() * this.aaScale;
+ this.ASPECT = this.WIDTH / this.HEIGHT;
+ this.NEAR = 1, FAR = 800;
+ this.CAMERA_Z = -150;
+ this.renderer = new THREE.WebGLRenderer({antialias: true});
+ this.renderer.sortObjects = false; // hopefully improve performance
+ // 'antialias: true' now works in Firefox too!
+ // setting this.aaScale = 2 will enable antialias in older Firefox but GPU load increases.
+ this.renderer.domElement.style.width = "100%";
+ this.renderer.domElement.style.height = "100%";
+ this.container.append(this.renderer.domElement);
+ this.renderer.setSize(this.WIDTH, this.HEIGHT);
+
+ this.camera = new THREE.PerspectiveCamera(20, this.ASPECT, 1, 800); // will be updated anyway
+ this.camera.position = new TV3(0, 0, this.CAMERA_Z);
+ this.camera.lookAt(new TV3(0, 0, 0));
+ this.perspectiveCamera = this.camera;
+ this.orthoscopicCamera = new THREE.OrthographicCamera();
+ this.orthoscopicCamera.position.z = this.CAMERA_Z;
+ this.orthoscopicCamera.lookAt(new TV3(0, 0, 0));
+
+ var self = this;
+ $(window).resize(function() { // only window can capture resize event
+ self.WIDTH = self.container.width() * self.aaScale;
+ self.HEIGHT = self.container.height() * self.aaScale;
+ self.ASPECT = self.WIDTH / self.HEIGHT;
+ self.renderer.setSize(self.WIDTH, self.HEIGHT);
+ self.camera.aspect = self.ASPECT;
+ self.camera.updateProjectionMatrix();
+ self.show();
+ });
+
+ this.scene = null;
+ this.rotationGroup = null; // which contains modelGroup
+ this.modelGroup = null;
+
+ this.bgColor = 0x000000;
+ this.fov = 20;
+ this.fogStart = 0.4;
+ this.slabNear = -50; // relative to the center of rotationGroup
+ this.slabFar = +50;
+
+ // Default values
+ this.sphereRadius = 1.5;
+ this.cylinderRadius = 0.4;
+ this.lineWidth = 1.5 * this.aaScale;
+ this.curveWidth = 3 * this.aaScale;
+ this.defaultColor = 0xCCCCCC;
+ this.sphereQuality = 16; //16;
+ this.cylinderQuality = 16; //8;
+ this.axisDIV = 5; // 3 still gives acceptable quality
+ this.strandDIV = 6;
+ this.nucleicAcidStrandDIV = 4;
+ this.tubeDIV = 8;
+ this.coilWidth = 0.3;
+ this.helixSheetWidth = 1.3;
+ this.nucleicAcidWidth = 0.8;
+ this.thickness = 0.4;
+
+ // UI variables
+ this.cq = new THREE.Quaternion(1, 0, 0, 0);
+ this.dq = new THREE.Quaternion(1, 0, 0, 0);
+ this.isDragging = false;
+ this.mouseStartX = 0;
+ this.mouseStartY = 0;
+ this.currentModelPos = 0;
+ this.cz = 0;
+ this.enableMouse();
+
+ if (suppressAutoload) return;
+ this.loadMolecule();
+}
+
+GLmol.prototype.setupLights = function(scene) {
+ var directionalLight = new THREE.DirectionalLight(0xFFFFFF);
+ directionalLight.position = new TV3(0.2, 0.2, -1).normalize();
+ directionalLight.intensity = 1.2;
+ scene.add(directionalLight);
+ var ambientLight = new THREE.AmbientLight(0x202020);
+ scene.add(ambientLight);
+};
+
+GLmol.prototype.parseSDF = function(str) {
+ var atoms = this.atoms;
+ var protein = this.protein;
+
+ var lines = str.split("\n");
+ if (lines.length < 4) return;
+ var atomCount = parseInt(lines[3].substr(0, 3));
+ if (isNaN(atomCount) || atomCount <= 0) return;
+ var bondCount = parseInt(lines[3].substr(3, 3));
+ var offset = 4;
+ if (lines.length < 4 + atomCount + bondCount) return;
+ for (var i = 1; i <= atomCount; i++) {
+ var line = lines[offset];
+ offset++;
+ var atom = {};
+ atom.serial = i;
+ atom.x = parseFloat(line.substr(0, 10));
+ atom.y = parseFloat(line.substr(10, 10));
+ atom.z = parseFloat(line.substr(20, 10));
+ atom.hetflag = true;
+ atom.atom = atom.elem = line.substr(31, 3).replace(/ /g, "");
+ atom.bonds = [];
+ atom.bondOrder = [];
+ atoms[i] = atom;
+ }
+ for (i = 1; i <= bondCount; i++) {
+ var line = lines[offset];
+ offset++;
+ var from = parseInt(line.substr(0, 3));
+ var to = parseInt(line.substr(3, 3));
+ var order = parseInt(line.substr(6, 3));
+ atoms[from].bonds.push(to);
+ atoms[from].bondOrder.push(order);
+ atoms[to].bonds.push(from);
+ atoms[to].bondOrder.push(order);
+ }
+
+ protein.smallMolecule = true;
+ return true;
+};
+
+GLmol.prototype.parseXYZ = function(str) {
+ var atoms = this.atoms;
+ var protein = this.protein;
+
+ var lines = str.split("\n");
+ if (lines.length < 3) return;
+ var atomCount = parseInt(lines[0].substr(0, 3));
+ if (isNaN(atomCount) || atomCount <= 0) return;
+ if (lines.length < atomCount + 2) return;
+ var offset = 2;
+ for (var i = 1; i <= atomCount; i++) {
+ var line = lines[offset++];
+ var tokens = line.replace(/^\s+/, "").replace(/\s+/g," ").split(" ");
+ console.log(tokens);
+ var atom = {};
+ atom.serial = i;
+ atom.atom = atom.elem = tokens[0];
+ atom.x = parseFloat(tokens[1]);
+ atom.y = parseFloat(tokens[2]);
+ atom.z = parseFloat(tokens[3]);
+ atom.hetflag = true;
+ atom.bonds = [];
+ atom.bondOrder = [];
+ atoms[i] = atom;
+ }
+ for (var i = 1; i < atomCount; i++) // hopefully XYZ is small enough
+ for (var j = i + 1; j <= atomCount; j++)
+ if (this.isConnected(atoms[i], atoms[j])) {
+ atoms[i].bonds.push(j);
+ atoms[i].bondOrder.push(1);
+ atoms[j].bonds.push(i);
+ atoms[j].bondOrder.push(1);
+ }
+ protein.smallMolecule = true;
+ return true;
+};
+
+GLmol.prototype.parsePDB2 = function(str) {
+ var atoms = this.atoms;
+ var protein = this.protein;
+ var molID;
+
+ var atoms_cnt = 0;
+ lines = str.split("\n");
+ for (var i = 0; i < lines.length; i++) {
+ line = lines[i].replace(/^\s*/, ''); // remove indent
+ var recordName = line.substr(0, 6);
+ if (recordName == 'ATOM ' || recordName == 'HETATM') {
+ var atom, resn, chain, resi, x, y, z, hetflag, elem, serial, altLoc, b;
+ altLoc = line.substr(16, 1);
+ if (altLoc != ' ' && altLoc != 'A') continue; // FIXME: ad hoc
+ serial = parseInt(line.substr(6, 5));
+ atom = line.substr(12, 4).replace(/ /g, "");
+ resn = line.substr(17, 3);
+ chain = line.substr(21, 1);
+ resi = parseInt(line.substr(22, 5));
+ x = parseFloat(line.substr(30, 8));
+ y = parseFloat(line.substr(38, 8));
+ z = parseFloat(line.substr(46, 8));
+ b = parseFloat(line.substr(60, 8));
+ elem = line.substr(76, 2).replace(/ /g, "");
+ if (elem == '') { // for some incorrect PDB files
+ elem = line.substr(12, 4).replace(/ /g,"");
+ }
+ if (line[0] == 'H') hetflag = true;
+ else hetflag = false;
+ atoms[serial] = {'resn': resn, 'x': x, 'y': y, 'z': z, 'elem': elem,
+ 'hetflag': hetflag, 'chain': chain, 'resi': resi, 'serial': serial, 'atom': atom,
+ 'bonds': [], 'ss': 'c', 'color': 0xFFFFFF, 'bonds': [], 'bondOrder': [], 'b': b /*', altLoc': altLoc*/};
+ } else if (recordName == 'SHEET ') {
+ var startChain = line.substr(21, 1);
+ var startResi = parseInt(line.substr(22, 4));
+ var endChain = line.substr(32, 1);
+ var endResi = parseInt(line.substr(33, 4));
+ protein.sheet.push([startChain, startResi, endChain, endResi]);
+ } else if (recordName == 'CONECT') {
+// MEMO: We don't have to parse SSBOND, LINK because both are also
+// described in CONECT. But what about 2JYT???
+ var from = parseInt(line.substr(6, 5));
+ for (var j = 0; j < 4; j++) {
+ var to = parseInt(line.substr([11, 16, 21, 26][j], 5));
+ if (isNaN(to)) continue;
+ if (atoms[from] != undefined) {
+ atoms[from].bonds.push(to);
+ atoms[from].bondOrder.push(1);
+ }
+ }
+ } else if (recordName == 'HELIX ') {
+ var startChain = line.substr(19, 1);
+ var startResi = parseInt(line.substr(21, 4));
+ var endChain = line.substr(31, 1);
+ var endResi = parseInt(line.substr(33, 4));
+ protein.helix.push([startChain, startResi, endChain, endResi]);
+ } else if (recordName == 'CRYST1') {
+ protein.a = parseFloat(line.substr(6, 9));
+ protein.b = parseFloat(line.substr(15, 9));
+ protein.c = parseFloat(line.substr(24, 9));
+ protein.alpha = parseFloat(line.substr(33, 7));
+ protein.beta = parseFloat(line.substr(40, 7));
+ protein.gamma = parseFloat(line.substr(47, 7));
+ protein.spacegroup = line.substr(55, 11);
+ this.defineCell();
+ } else if (recordName == 'REMARK') {
+ var type = parseInt(line.substr(7, 3));
+ if (type == 290 && line.substr(13, 5) == 'SMTRY') {
+ var n = parseInt(line[18]) - 1;
+ var m = parseInt(line.substr(21, 2));
+ if (protein.symMat[m] == undefined) protein.symMat[m] = new THREE.Matrix4().identity();
+ protein.symMat[m].elements[n] = parseFloat(line.substr(24, 9));
+ protein.symMat[m].elements[n + 4] = parseFloat(line.substr(34, 9));
+ protein.symMat[m].elements[n + 8] = parseFloat(line.substr(44, 9));
+ protein.symMat[m].elements[n + 12] = parseFloat(line.substr(54, 10));
+ } else if (type == 350 && line.substr(13, 5) == 'BIOMT') {
+ var n = parseInt(line[18]) - 1;
+ var m = parseInt(line.substr(21, 2));
+ if (protein.biomtMatrices[m] == undefined) protein.biomtMatrices[m] = new THREE.Matrix4().identity();
+ protein.biomtMatrices[m].elements[n] = parseFloat(line.substr(24, 9));
+ protein.biomtMatrices[m].elements[n + 4] = parseFloat(line.substr(34, 9));
+ protein.biomtMatrices[m].elements[n + 8] = parseFloat(line.substr(44, 9));
+ protein.biomtMatrices[m].elements[n + 12] = parseFloat(line.substr(54, 10));
+ } else if (type == 350 && line.substr(11, 11) == 'BIOMOLECULE') {
+ protein.biomtMatrices = []; protein.biomtChains = '';
+ } else if (type == 350 && line.substr(34, 6) == 'CHAINS') {
+ protein.biomtChains += line.substr(41, 40);
+ }
+ } else if (recordName == 'HEADER') {
+ protein.pdbID = line.substr(62, 4);
+ } else if (recordName == 'TITLE ') {
+ if (protein.title == undefined) protein.title = "";
+ protein.title += line.substr(10, 70) + "\n"; // CHECK: why 60 is not enough???
+ } else if (recordName == 'COMPND') {
+ // TODO: Implement me!
+ }
+ }
+
+ // Assign secondary structures
+ for (i = 0; i < atoms.length; i++) {
+ atom = atoms[i]; if (atom == undefined) continue;
+
+ var found = false;
+ // MEMO: Can start chain and end chain differ?
+ for (j = 0; j < protein.sheet.length; j++) {
+ if (atom.chain != protein.sheet[j][0]) continue;
+ if (atom.resi < protein.sheet[j][1]) continue;
+ if (atom.resi > protein.sheet[j][3]) continue;
+ atom.ss = 's';
+ if (atom.resi == protein.sheet[j][1]) atom.ssbegin = true;
+ if (atom.resi == protein.sheet[j][3]) atom.ssend = true;
+ }
+ for (j = 0; j < protein.helix.length; j++) {
+ if (atom.chain != protein.helix[j][0]) continue;
+ if (atom.resi < protein.helix[j][1]) continue;
+ if (atom.resi > protein.helix[j][3]) continue;
+ atom.ss = 'h';
+ if (atom.resi == protein.helix[j][1]) atom.ssbegin = true;
+ else if (atom.resi == protein.helix[j][3]) atom.ssend = true;
+ }
+ }
+ protein.smallMolecule = false;
+ return true;
+};
+
+// Catmull-Rom subdivision
+GLmol.prototype.subdivide = function(_points, DIV) { // points as Vector3
+ var ret = [];
+ var points = _points;
+ points = new Array(); // Smoothing test
+ points.push(_points[0]);
+ for (var i = 1, lim = _points.length - 1; i < lim; i++) {
+ var p1 = _points[i], p2 = _points[i + 1];
+ if (p1.smoothen) points.push(new TV3((p1.x + p2.x) / 2, (p1.y + p2.y) / 2, (p1.z + p2.z) / 2));
+ else points.push(p1);
+ }
+ points.push(_points[_points.length - 1]);
+
+ for (var i = -1, size = points.length; i <= size - 3; i++) {
+ var p0 = points[(i == -1) ? 0 : i];
+ var p1 = points[i + 1], p2 = points[i + 2];
+ var p3 = points[(i == size - 3) ? size - 1 : i + 3];
+ var v0 = new TV3().sub(p2, p0).multiplyScalar(0.5);
+ var v1 = new TV3().sub(p3, p1).multiplyScalar(0.5);
+ for (var j = 0; j < DIV; j++) {
+ var t = 1.0 / DIV * j;
+ var x = p1.x + t * v0.x
+ + t * t * (-3 * p1.x + 3 * p2.x - 2 * v0.x - v1.x)
+ + t * t * t * (2 * p1.x - 2 * p2.x + v0.x + v1.x);
+ var y = p1.y + t * v0.y
+ + t * t * (-3 * p1.y + 3 * p2.y - 2 * v0.y - v1.y)
+ + t * t * t * (2 * p1.y - 2 * p2.y + v0.y + v1.y);
+ var z = p1.z + t * v0.z
+ + t * t * (-3 * p1.z + 3 * p2.z - 2 * v0.z - v1.z)
+ + t * t * t * (2 * p1.z - 2 * p2.z + v0.z + v1.z);
+ ret.push(new TV3(x, y, z));
+ }
+ }
+ ret.push(points[points.length - 1]);
+ return ret;
+};
+
+GLmol.prototype.drawAtomsAsSphere = function(group, atomlist, defaultRadius, forceDefault, scale) {
+ var sphereGeometry = new THREE.SphereGeometry(1, this.sphereQuality, this.sphereQuality); // r, seg, ring
+ for (var i = 0; i < atomlist.length; i++) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ var sphereMaterial = new THREE.MeshLambertMaterial({color: atom.color});
+ var sphere = new THREE.Mesh(sphereGeometry, sphereMaterial);
+ group.add(sphere);
+ var r = (!forceDefault && this.vdwRadii[atom.elem] != undefined) ? this.vdwRadii[atom.elem] : defaultRadius;
+ if (!forceDefault && scale) r *= scale;
+ sphere.scale.x = sphere.scale.y = sphere.scale.z = r;
+ sphere.position.x = atom.x;
+ sphere.position.y = atom.y;
+ sphere.position.z = atom.z;
+ }
+};
+
+// about two times faster than sphere when div = 2
+GLmol.prototype.drawAtomsAsIcosahedron = function(group, atomlist, defaultRadius, forceDefault) {
+ var geo = this.IcosahedronGeometry();
+ for (var i = 0; i < atomlist.length; i++) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ var mat = new THREE.MeshLambertMaterial({color: atom.color});
+ var sphere = new THREE.Mesh(geo, mat);
+ sphere.scale.x = sphere.scale.y = sphere.scale.z = (!forceDefault && this.vdwRadii[atom.elem] != undefined) ? this.vdwRadii[atom.elem] : defaultRadius;
+ group.add(sphere);
+ sphere.position.x = atom.x;
+ sphere.position.y = atom.y;
+ sphere.position.z = atom.z;
+ }
+};
+
+GLmol.prototype.isConnected = function(atom1, atom2) {
+ var s = atom1.bonds.indexOf(atom2.serial);
+ if (s != -1) return atom1.bondOrder[s];
+
+ if (this.protein.smallMolecule && (atom1.hetflag || atom2.hetflag)) return 0; // CHECK: or should I ?
+
+ var distSquared = (atom1.x - atom2.x) * (atom1.x - atom2.x) +
+ (atom1.y - atom2.y) * (atom1.y - atom2.y) +
+ (atom1.z - atom2.z) * (atom1.z - atom2.z);
+
+// if (atom1.altLoc != atom2.altLoc) return false;
+ if (isNaN(distSquared)) return 0;
+ if (distSquared < 0.5) return 0; // maybe duplicate position.
+
+ if (distSquared > 1.3 && (atom1.elem == 'H' || atom2.elem == 'H' || atom1.elem == 'D' || atom2.elem == 'D')) return 0;
+ if (distSquared < 3.42 && (atom1.elem == 'S' || atom2.elem == 'S')) return 1;
+ if (distSquared > 2.78) return 0;
+ return 1;
+};
+
+GLmol.prototype.drawBondAsStickSub = function(group, atom1, atom2, bondR, order) {
+ var delta, tmp;
+ if (order > 1) delta = this.calcBondDelta(atom1, atom2, bondR * 2.3);
+ var p1 = new TV3(atom1.x, atom1.y, atom1.z);
+ var p2 = new TV3(atom2.x, atom2.y, atom2.z);
+ var mp = p1.clone().addSelf(p2).multiplyScalar(0.5);
+
+ var c1 = new TCo(atom1.color), c2 = new TCo(atom2.color);
+ if (order == 1 || order == 3) {
+ this.drawCylinder(group, p1, mp, bondR, atom1.color);
+ this.drawCylinder(group, p2, mp, bondR, atom2.color);
+ }
+ if (order > 1) {
+ tmp = mp.clone().addSelf(delta);
+ this.drawCylinder(group, p1.clone().addSelf(delta), tmp, bondR, atom1.color);
+ this.drawCylinder(group, p2.clone().addSelf(delta), tmp, bondR, atom2.color);
+ tmp = mp.clone().subSelf(delta);
+ this.drawCylinder(group, p1.clone().subSelf(delta), tmp, bondR, atom1.color);
+ this.drawCylinder(group, p2.clone().subSelf(delta), tmp, bondR, atom2.color);
+ }
+};
+
+GLmol.prototype.drawBondsAsStick = function(group, atomlist, bondR, atomR, ignoreNonbonded, multipleBonds, scale) {
+ var sphereGeometry = new THREE.SphereGeometry(1, this.sphereQuality, this.sphereQuality);
+ var nAtoms = atomlist.length, mp;
+ var forSpheres = [];
+ if (!!multipleBonds) bondR /= 2.5;
+ for (var _i = 0; _i < nAtoms; _i++) {
+ var i = atomlist[_i];
+ var atom1 = this.atoms[i];
+ if (atom1 == undefined) continue;
+ for (var _j = _i + 1; _j < _i + 30 && _j < nAtoms; _j++) {
+ var j = atomlist[_j];
+ var atom2 = this.atoms[j];
+ if (atom2 == undefined) continue;
+ var order = this.isConnected(atom1, atom2);
+ if (order == 0) continue;
+ atom1.connected = atom2.connected = true;
+ this.drawBondAsStickSub(group, atom1, atom2, bondR, (!!multipleBonds) ? order : 1);
+ }
+ for (var _j = 0; _j < atom1.bonds.length; _j++) {
+ var j = atom1.bonds[_j];
+ if (j < i + 30) continue; // be conservative!
+ if (atomlist.indexOf(j) == -1) continue;
+ var atom2 = this.atoms[j];
+ if (atom2 == undefined) continue;
+ atom1.connected = atom2.connected = true;
+ this.drawBondAsStickSub(group, atom1, atom2, bondR, (!!multipleBonds) ? atom1.bondOrder[_j] : 1);
+ }
+ if (atom1.connected) forSpheres.push(i);
+ }
+ this.drawAtomsAsSphere(group, forSpheres, atomR, !scale, scale);
+};
+
+GLmol.prototype.defineCell = function() {
+ var p = this.protein;
+ if (p.a == undefined) return;
+
+ p.ax = p.a;
+ p.ay = 0;
+ p.az = 0;
+ p.bx = p.b * Math.cos(Math.PI / 180.0 * p.gamma);
+ p.by = p.b * Math.sin(Math.PI / 180.0 * p.gamma);
+ p.bz = 0;
+ p.cx = p.c * Math.cos(Math.PI / 180.0 * p.beta);
+ p.cy = p.c * (Math.cos(Math.PI / 180.0 * p.alpha) -
+ Math.cos(Math.PI / 180.0 * p.gamma)
+ * Math.cos(Math.PI / 180.0 * p.beta)
+ / Math.sin(Math.PI / 180.0 * p.gamma));
+ p.cz = Math.sqrt(p.c * p.c * Math.sin(Math.PI / 180.0 * p.beta)
+ * Math.sin(Math.PI / 180.0 * p.beta) - p.cy * p.cy);
+};
+
+GLmol.prototype.drawUnitcell = function(group) {
+ var p = this.protein;
+ if (p.a == undefined) return;
+
+ var vertices = [[0, 0, 0], [p.ax, p.ay, p.az], [p.bx, p.by, p.bz], [p.ax + p.bx, p.ay + p.by, p.az + p.bz],
+ [p.cx, p.cy, p.cz], [p.cx + p.ax, p.cy + p.ay, p.cz + p.az], [p.cx + p.bx, p.cy + p.by, p.cz + p.bz], [p.cx + p.ax + p.bx, p.cy + p.ay + p.by, p.cz + p.az + p.bz]];
+ var edges = [0, 1, 0, 2, 1, 3, 2, 3, 4, 5, 4, 6, 5, 7, 6, 7, 0, 4, 1, 5, 2, 6, 3, 7];
+
+ var geo = new THREE.Geometry();
+ for (var i = 0; i < edges.length; i++) {
+ geo.vertices.push(new TV3(vertices[edges[i]][0], vertices[edges[i]][1], vertices[edges[i]][2]));
+ }
+ var lineMaterial = new THREE.LineBasicMaterial({linewidth: 1, color: 0xcccccc});
+ var line = new THREE.Line(geo, lineMaterial);
+ line.type = THREE.LinePieces;
+ group.add(line);
+};
+
+// TODO: Find inner side of a ring
+GLmol.prototype.calcBondDelta = function(atom1, atom2, sep) {
+ var dot;
+ var axis = new TV3(atom1.x - atom2.x, atom1.y - atom2.y, atom1.z - atom2.z).normalize();
+ var found = null;
+ for (var i = 0; i < atom1.bonds.length && !found; i++) {
+ var atom = this.atoms[atom1.bonds[i]]; if (!atom) continue;
+ if (atom.serial != atom2.serial && atom.elem != 'H') found = atom;
+ }
+ for (var i = 0; i < atom2.bonds.length && !found; i++) {
+ var atom = this.atoms[atom2.bonds[i]]; if (!atom) continue;
+ if (atom.serial != atom1.serial && atom.elem != 'H') found = atom;
+ }
+ if (found) {
+ var tmp = new TV3(atom1.x - found.x, atom1.y - found.y, atom1.z - found.z).normalize();
+ dot = tmp.dot(axis);
+ delta = new TV3(tmp.x - axis.x * dot, tmp.y - axis.y * dot, tmp.z - axis.z * dot);
+ }
+ if (!found || Math.abs(dot - 1) < 0.001 || Math.abs(dot + 1) < 0.001) {
+ if (axis.x < 0.01 && axis.y < 0.01) {
+ delta = new TV3(0, -axis.z, axis.y);
+ } else {
+ delta = new TV3(-axis.y, axis.x, 0);
+ }
+ }
+ delta.normalize().multiplyScalar(sep);
+ return delta;
+};
+
+GLmol.prototype.drawBondsAsLineSub = function(geo, atom1, atom2, order) {
+ var delta, tmp, vs = geo.vertices, cs = geo.colors;
+ if (order > 1) delta = this.calcBondDelta(atom1, atom2, 0.15);
+ var p1 = new TV3(atom1.x, atom1.y, atom1.z);
+ var p2 = new TV3(atom2.x, atom2.y, atom2.z);
+ var mp = p1.clone().addSelf(p2).multiplyScalar(0.5);
+
+ var c1 = new TCo(atom1.color), c2 = new TCo(atom2.color);
+ if (order == 1 || order == 3) {
+ vs.push(p1); cs.push(c1); vs.push(mp); cs.push(c1);
+ vs.push(p2); cs.push(c2); vs.push(mp); cs.push(c2);
+ }
+ if (order > 1) {
+ vs.push(p1.clone().addSelf(delta)); cs.push(c1);
+ vs.push(tmp = mp.clone().addSelf(delta)); cs.push(c1);
+ vs.push(p2.clone().addSelf(delta)); cs.push(c2);
+ vs.push(tmp); cs.push(c2);
+ vs.push(p1.clone().subSelf(delta)); cs.push(c1);
+ vs.push(tmp = mp.clone().subSelf(delta)); cs.push(c1);
+ vs.push(p2.clone().subSelf(delta)); cs.push(c2);
+ vs.push(tmp); cs.push(c2);
+ }
+};
+
+GLmol.prototype.drawBondsAsLine = function(group, atomlist, lineWidth) {
+ var geo = new THREE.Geometry();
+ var nAtoms = atomlist.length;
+
+ for (var _i = 0; _i < nAtoms; _i++) {
+ var i = atomlist[_i];
+ var atom1 = this.atoms[i];
+ if (atom1 == undefined) continue;
+ for (var _j = _i + 1; _j < _i + 30 && _j < nAtoms; _j++) {
+ var j = atomlist[_j];
+ var atom2 = this.atoms[j];
+ if (atom2 == undefined) continue;
+ var order = this.isConnected(atom1, atom2);
+ if (order == 0) continue;
+
+ this.drawBondsAsLineSub(geo, atom1, atom2, order);
+ }
+ for (var _j = 0; _j < atom1.bonds.length; _j++) {
+ var j = atom1.bonds[_j];
+ if (j < i + 30) continue; // be conservative!
+ if (atomlist.indexOf(j) == -1) continue;
+ var atom2 = this.atoms[j];
+ if (atom2 == undefined) continue;
+ this.drawBondsAsLineSub(geo, atom1, atom2, atom1.bondOrder[_j]);
+ }
+ }
+ var lineMaterial = new THREE.LineBasicMaterial({linewidth: lineWidth});
+ lineMaterial.vertexColors = true;
+
+ var line = new THREE.Line(geo, lineMaterial);
+ line.type = THREE.LinePieces;
+ group.add(line);
+};
+
+GLmol.prototype.drawSmoothCurve = function(group, _points, width, colors, div) {
+ if (_points.length == 0) return;
+
+ div = (div == undefined) ? 5 : div;
+
+ var geo = new THREE.Geometry();
+ var points = this.subdivide(_points, div);
+
+ for (var i = 0; i < points.length; i++) {
+ geo.vertices.push(points[i]);
+ geo.colors.push(new TCo(colors[(i == 0) ? 0 : Math.round((i - 1) / div)]));
+ }
+ var lineMaterial = new THREE.LineBasicMaterial({linewidth: width});
+ lineMaterial.vertexColors = true;
+ var line = new THREE.Line(geo, lineMaterial);
+ line.type = THREE.LineStrip;
+ group.add(line);
+};
+
+GLmol.prototype.drawAsCross = function(group, atomlist, delta) {
+ var geo = new THREE.Geometry();
+ var points = [[delta, 0, 0], [-delta, 0, 0], [0, delta, 0], [0, -delta, 0], [0, 0, delta], [0, 0, -delta]];
+
+ for (var i = 0, lim = atomlist.length; i < lim; i++) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ var c = new TCo(atom.color);
+ for (var j = 0; j < 6; j++) {
+ geo.vertices.push(new TV3(atom.x + points[j][0], atom.y + points[j][1], atom.z + points[j][2]));
+ geo.colors.push(c);
+ }
+ }
+ var lineMaterial = new THREE.LineBasicMaterial({linewidth: this.lineWidth});
+ lineMaterial.vertexColors = true;
+ var line = new THREE.Line(geo, lineMaterial, THREE.LinePieces);
+ group.add(line);
+};
+
+// FIXME: Winkled...
+GLmol.prototype.drawSmoothTube = function(group, _points, colors, radii) {
+ if (_points.length < 2) return;
+
+ var circleDiv = this.tubeDIV, axisDiv = this.axisDIV;
+ var geo = new THREE.Geometry();
+ var points = this.subdivide(_points, axisDiv);
+ var prevAxis1 = new TV3(), prevAxis2;
+
+ for (var i = 0, lim = points.length; i < lim; i++) {
+ var r, idx = (i - 1) / axisDiv;
+ if (i == 0) r = radii[0];
+ else {
+ if (idx % 1 == 0) r = radii[idx];
+ else {
+ var floored = Math.floor(idx);
+ var tmp = idx - floored;
+ r = radii[floored] * tmp + radii[floored + 1] * (1 - tmp);
+ }
+ }
+ var delta, axis1, axis2;
+
+ if (i < lim - 1) {
+ delta = new TV3().sub(points[i], points[i + 1]);
+ axis1 = new TV3(0, - delta.z, delta.y).normalize().multiplyScalar(r);
+ axis2 = new TV3().cross(delta, axis1).normalize().multiplyScalar(r);
+// var dir = 1, offset = 0;
+ if (prevAxis1.dot(axis1) < 0) {
+ axis1.negate(); axis2.negate(); //dir = -1;//offset = 2 * Math.PI / axisDiv;
+ }
+ prevAxis1 = axis1; prevAxis2 = axis2;
+ } else {
+ axis1 = prevAxis1; axis2 = prevAxis2;
+ }
+
+ for (var j = 0; j < circleDiv; j++) {
+ var angle = 2 * Math.PI / circleDiv * j; //* dir + offset;
+ var c = Math.cos(angle), s = Math.sin(angle);
+ geo.vertices.push(new TV3(
+ points[i].x + c * axis1.x + s * axis2.x,
+ points[i].y + c * axis1.y + s * axis2.y,
+ points[i].z + c * axis1.z + s * axis2.z));
+ }
+ }
+
+ var offset = 0;
+ for (var i = 0, lim = points.length - 1; i < lim; i++) {
+ var c = new TCo(colors[Math.round((i - 1)/ axisDiv)]);
+
+ var reg = 0;
+ var r1 = new TV3().sub(geo.vertices[offset], geo.vertices[offset + circleDiv]).lengthSq();
+ var r2 = new TV3().sub(geo.vertices[offset], geo.vertices[offset + circleDiv + 1]).lengthSq();
+ if (r1 > r2) {r1 = r2; reg = 1;};
+ for (var j = 0; j < circleDiv; j++) {
+ geo.faces.push(new TF3(offset + j, offset + (j + reg) % circleDiv + circleDiv, offset + (j + 1) % circleDiv));
+ geo.faces.push(new TF3(offset + (j + 1) % circleDiv, offset + (j + reg) % circleDiv + circleDiv, offset + (j + reg + 1) % circleDiv + circleDiv));
+ geo.faces[geo.faces.length -2].color = c;
+ geo.faces[geo.faces.length -1].color = c;
+ }
+ offset += circleDiv;
+ }
+ geo.computeFaceNormals();
+ geo.computeVertexNormals(false);
+ var mat = new THREE.MeshLambertMaterial();
+ mat.vertexColors = THREE.FaceColors;
+ var mesh = new THREE.Mesh(geo, mat);
+ mesh.doubleSided = true;
+ group.add(mesh);
+};
+
+
+GLmol.prototype.drawMainchainCurve = function(group, atomlist, curveWidth, atomName, div) {
+ var points = [], colors = [];
+ var currentChain, currentResi;
+ if (div == undefined) div = 5;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ if ((atom.atom == atomName) && !atom.hetflag) {
+ if (currentChain != atom.chain || currentResi + 1 != atom.resi) {
+ this.drawSmoothCurve(group, points, curveWidth, colors, div);
+ points = [];
+ colors = [];
+ }
+ points.push(new TV3(atom.x, atom.y, atom.z));
+ colors.push(atom.color);
+ currentChain = atom.chain;
+ currentResi = atom.resi;
+ }
+ }
+ this.drawSmoothCurve(group, points, curveWidth, colors, div);
+};
+
+GLmol.prototype.drawMainchainTube = function(group, atomlist, atomName, radius) {
+ var points = [], colors = [], radii = [];
+ var currentChain, currentResi;
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ if ((atom.atom == atomName) && !atom.hetflag) {
+ if (currentChain != atom.chain || currentResi + 1 != atom.resi) {
+ this.drawSmoothTube(group, points, colors, radii);
+ points = []; colors = []; radii = [];
+ }
+ points.push(new TV3(atom.x, atom.y, atom.z));
+ if (radius == undefined) {
+ radii.push((atom.b > 0) ? atom.b / 100 : 0.3);
+ } else {
+ radii.push(radius);
+ }
+ colors.push(atom.color);
+ currentChain = atom.chain;
+ currentResi = atom.resi;
+ }
+ }
+ this.drawSmoothTube(group, points, colors, radii);
+};
+
+GLmol.prototype.drawStrip = function(group, p1, p2, colors, div, thickness) {
+ if ((p1.length) < 2) return;
+ div = div || this.axisDIV;
+ p1 = this.subdivide(p1, div);
+ p2 = this.subdivide(p2, div);
+ if (!thickness) return this.drawThinStrip(group, p1, p2, colors, div);
+
+ var geo = new THREE.Geometry();
+ var vs = geo.vertices, fs = geo.faces;
+ var axis, p1v, p2v, a1v, a2v;
+ for (var i = 0, lim = p1.length; i < lim; i++) {
+ vs.push(p1v = p1[i]); // 0
+ vs.push(p1v); // 1
+ vs.push(p2v = p2[i]); // 2
+ vs.push(p2v); // 3
+ if (i < lim - 1) {
+ var toNext = p1[i + 1].clone().subSelf(p1[i]);
+ var toSide = p2[i].clone().subSelf(p1[i]);
+ axis = toSide.crossSelf(toNext).normalize().multiplyScalar(thickness);
+ }
+ vs.push(a1v = p1[i].clone().addSelf(axis)); // 4
+ vs.push(a1v); // 5
+ vs.push(a2v = p2[i].clone().addSelf(axis)); // 6
+ vs.push(a2v); // 7
+ }
+ var faces = [[0, 2, -6, -8], [-4, -2, 6, 4], [7, 3, -5, -1], [-3, -7, 1, 5]];
+ for (var i = 1, lim = p1.length; i < lim; i++) {
+ var offset = 8 * i, color = new TCo(colors[Math.round((i - 1)/ div)]);
+ for (var j = 0; j < 4; j++) {
+ var f = new THREE.Face4(offset + faces[j][0], offset + faces[j][1], offset + faces[j][2], offset + faces[j][3], undefined, color);
+ fs.push(f);
+ }
+ }
+ var vsize = vs.length - 8; // Cap
+ for (var i = 0; i < 4; i++) {vs.push(vs[i * 2]); vs.push(vs[vsize + i * 2])};
+ vsize += 8;
+ fs.push(new THREE.Face4(vsize, vsize + 2, vsize + 6, vsize + 4, undefined, fs[0].color));
+ fs.push(new THREE.Face4(vsize + 1, vsize + 5, vsize + 7, vsize + 3, undefined, fs[fs.length - 3].color));
+ geo.computeFaceNormals();
+ geo.computeVertexNormals(false);
+ var material = new THREE.MeshLambertMaterial();
+ material.vertexColors = THREE.FaceColors;
+ var mesh = new THREE.Mesh(geo, material);
+ mesh.doubleSided = true;
+ group.add(mesh);
+};
+
+
+GLmol.prototype.drawThinStrip = function(group, p1, p2, colors, div) {
+ var geo = new THREE.Geometry();
+ for (var i = 0, lim = p1.length; i < lim; i++) {
+ geo.vertices.push(p1[i]); // 2i
+ geo.vertices.push(p2[i]); // 2i + 1
+ }
+ for (var i = 1, lim = p1.length; i < lim; i++) {
+ var f = new THREE.Face4(2 * i, 2 * i + 1, 2 * i - 1, 2 * i - 2);
+ f.color = new TCo(colors[Math.round((i - 1)/ div)]);
+ geo.faces.push(f);
+ }
+ geo.computeFaceNormals();
+ geo.computeVertexNormals(false);
+ var material = new THREE.MeshLambertMaterial();
+ material.vertexColors = THREE.FaceColors;
+ var mesh = new THREE.Mesh(geo, material);
+ mesh.doubleSided = true;
+ group.add(mesh);
+};
+
+
+GLmol.prototype.IcosahedronGeometry = function() {
+ if (!this.icosahedron) this.icosahedron = new THREE.IcosahedronGeometry(1);
+ return this.icosahedron;
+};
+
+GLmol.prototype.drawCylinder = function(group, from, to, radius, color, cap) {
+ if (!from || !to) return;
+
+ var midpoint = new TV3().add(from, to).multiplyScalar(0.5);
+ var color = new TCo(color);
+
+ if (!this.cylinderGeometry) {
+ this.cylinderGeometry = new THREE.CylinderGeometry(1, 1, 1, this.cylinderQuality, 1, !cap);
+ this.cylinderGeometry.faceUvs = [];
+ this.faceVertexUvs = [];
+ }
+ var cylinderMaterial = new THREE.MeshLambertMaterial({color: color.getHex()});
+ var cylinder = new THREE.Mesh(this.cylinderGeometry, cylinderMaterial);
+ cylinder.position = midpoint;
+ cylinder.lookAt(from);
+ cylinder.updateMatrix();
+ cylinder.matrixAutoUpdate = false;
+ var m = new THREE.Matrix4().makeScale(radius, radius, from.distanceTo(to));
+ m.rotateX(Math.PI / 2);
+ cylinder.matrix.multiplySelf(m);
+ group.add(cylinder);
+};
+
+// FIXME: transition!
+GLmol.prototype.drawHelixAsCylinder = function(group, atomlist, radius) {
+ var start = null;
+ var currentChain, currentResi;
+
+ var others = [], beta = [];
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined || atom.hetflag) continue;
+ if ((atom.ss != 'h' && atom.ss != 's') || atom.ssend || atom.ssbegin) others.push(atom.serial);
+ if (atom.ss == 's') beta.push(atom.serial);
+ if (atom.atom != 'CA') continue;
+
+ if (atom.ss == 'h' && atom.ssend) {
+ if (start != null) this.drawCylinder(group, new TV3(start.x, start.y, start.z), new TV3(atom.x, atom.y, atom.z), radius, atom.color, true);
+ start = null;
+ }
+ currentChain = atom.chain;
+ currentResi = atom.resi;
+ if (start == null && atom.ss == 'h' && atom.ssbegin) start = atom;
+ }
+ if (start != null) this.drawCylinder(group, new TV3(start.x, start.y, start.z), new TV3(atom.x, atom.y, atom.z), radius, atom.color);
+ this.drawMainchainTube(group, others, "CA", 0.3);
+ this.drawStrand(group, beta, undefined, undefined, true, 0, this.helixSheetWidth, false, this.thickness * 2);
+};
+
+GLmol.prototype.drawCartoon = function(group, atomlist, doNotSmoothen, thickness) {
+ this.drawStrand(group, atomlist, 2, undefined, true, undefined, undefined, doNotSmoothen, thickness);
+};
+
+GLmol.prototype.drawStrand = function(group, atomlist, num, div, fill, coilWidth, helixSheetWidth, doNotSmoothen, thickness) {
+ num = num || this.strandDIV;
+ div = div || this.axisDIV;
+ coilWidth = coilWidth || this.coilWidth;
+ doNotSmoothen == (doNotSmoothen == undefined) ? false : doNotSmoothen;
+ helixSheetWidth = helixSheetWidth || this.helixSheetWidth;
+ var points = []; for (var k = 0; k < num; k++) points[k] = [];
+ var colors = [];
+ var currentChain, currentResi, currentCA;
+ var prevCO = null, ss=null, ssborder = false;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ if ((atom.atom == 'O' || atom.atom == 'CA') && !atom.hetflag) {
+ if (atom.atom == 'CA') {
+ if (currentChain != atom.chain || currentResi + 1 != atom.resi) {
+ for (var j = 0; !thickness && j < num; j++)
+ this.drawSmoothCurve(group, points[j], 1 ,colors, div);
+ if (fill) this.drawStrip(group, points[0], points[num - 1], colors, div, thickness);
+ var points = []; for (var k = 0; k < num; k++) points[k] = [];
+ colors = [];
+ prevCO = null; ss = null; ssborder = false;
+ }
+ currentCA = new TV3(atom.x, atom.y, atom.z);
+ currentChain = atom.chain;
+ currentResi = atom.resi;
+ ss = atom.ss; ssborder = atom.ssstart || atom.ssend;
+ colors.push(atom.color);
+ } else { // O
+ var O = new TV3(atom.x, atom.y, atom.z);
+ O.subSelf(currentCA);
+ O.normalize(); // can be omitted for performance
+ O.multiplyScalar((ss == 'c') ? coilWidth : helixSheetWidth);
+ if (prevCO != undefined && O.dot(prevCO) < 0) O.negate();
+ prevCO = O;
+ for (var j = 0; j < num; j++) {
+ var delta = -1 + 2 / (num - 1) * j;
+ var v = new TV3(currentCA.x + prevCO.x * delta,
+ currentCA.y + prevCO.y * delta, currentCA.z + prevCO.z * delta);
+ if (!doNotSmoothen && ss == 's') v.smoothen = true;
+ points[j].push(v);
+ }
+ }
+ }
+ }
+ for (var j = 0; !thickness && j < num; j++)
+ this.drawSmoothCurve(group, points[j], 1 ,colors, div);
+ if (fill) this.drawStrip(group, points[0], points[num - 1], colors, div, thickness);
+};
+
+GLmol.prototype.drawNucleicAcidLadderSub = function(geo, lineGeo, atoms, color) {
+// color.r *= 0.9; color.g *= 0.9; color.b *= 0.9;
+ if (atoms[0] != undefined && atoms[1] != undefined && atoms[2] != undefined &&
+ atoms[3] != undefined && atoms[4] != undefined && atoms[5] != undefined) {
+ var baseFaceId = geo.vertices.length;
+ for (var i = 0; i <= 5; i++) geo.vertices.push(atoms[i]);
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 1, baseFaceId + 2));
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 2, baseFaceId + 3));
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 3, baseFaceId + 4));
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 4, baseFaceId + 5));
+ for (var j = geo.faces.length - 4, lim = geo.faces.length; j < lim; j++) geo.faces[j].color = color;
+ }
+ if (atoms[4] != undefined && atoms[3] != undefined && atoms[6] != undefined &&
+ atoms[7] != undefined && atoms[8] != undefined) {
+ var baseFaceId = geo.vertices.length;
+ geo.vertices.push(atoms[4]);
+ geo.vertices.push(atoms[3]);
+ geo.vertices.push(atoms[6]);
+ geo.vertices.push(atoms[7]);
+ geo.vertices.push(atoms[8]);
+ for (var i = 0; i <= 4; i++) geo.colors.push(color);
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 1, baseFaceId + 2));
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 2, baseFaceId + 3));
+ geo.faces.push(new TF3(baseFaceId, baseFaceId + 3, baseFaceId + 4));
+ for (var j = geo.faces.length - 3, lim = geo.faces.length; j < lim; j++) geo.faces[j].color = color;
+ }
+};
+
+GLmol.prototype.drawNucleicAcidLadder = function(group, atomlist) {
+ var geo = new THREE.Geometry();
+ var lineGeo = new THREE.Geometry();
+ var baseAtoms = ["N1", "C2", "N3", "C4", "C5", "C6", "N9", "C8", "N7"];
+ var currentChain, currentResi, currentComponent = new Array(baseAtoms.length);
+ var color = new TCo(0xcc0000);
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined || atom.hetflag) continue;
+
+ if (atom.resi != currentResi || atom.chain != currentChain) {
+ this.drawNucleicAcidLadderSub(geo, lineGeo, currentComponent, color);
+ currentComponent = new Array(baseAtoms.length);
+ }
+ var pos = baseAtoms.indexOf(atom.atom);
+ if (pos != -1) currentComponent[pos] = new TV3(atom.x, atom.y, atom.z);
+ if (atom.atom == 'O3\'') color = new TCo(atom.color);
+ currentResi = atom.resi; currentChain = atom.chain;
+ }
+ this.drawNucleicAcidLadderSub(geo, lineGeo, currentComponent, color);
+ geo.computeFaceNormals();
+ var mat = new THREE.MeshLambertMaterial();
+ mat.vertexColors = THREE.VertexColors;
+ var mesh = new THREE.Mesh(geo, mat);
+ mesh.doubleSided = true;
+ group.add(mesh);
+};
+
+GLmol.prototype.drawNucleicAcidStick = function(group, atomlist) {
+ var currentChain, currentResi, start = null, end = null;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined || atom.hetflag) continue;
+
+ if (atom.resi != currentResi || atom.chain != currentChain) {
+ if (start != null && end != null)
+ this.drawCylinder(group, new TV3(start.x, start.y, start.z),
+ new TV3(end.x, end.y, end.z), 0.3, start.color, true);
+ start = null; end = null;
+ }
+ if (atom.atom == 'O3\'') start = atom;
+ if (atom.resn == ' A' || atom.resn == ' G' || atom.resn == ' DA' || atom.resn == ' DG') {
+ if (atom.atom == 'N1') end = atom; // N1(AG), N3(CTU)
+ } else if (atom.atom == 'N3') {
+ end = atom;
+ }
+ currentResi = atom.resi; currentChain = atom.chain;
+ }
+ if (start != null && end != null)
+ this.drawCylinder(group, new TV3(start.x, start.y, start.z),
+ new TV3(end.x, end.y, end.z), 0.3, start.color, true);
+};
+
+GLmol.prototype.drawNucleicAcidLine = function(group, atomlist) {
+ var currentChain, currentResi, start = null, end = null;
+ var geo = new THREE.Geometry();
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined || atom.hetflag) continue;
+
+ if (atom.resi != currentResi || atom.chain != currentChain) {
+ if (start != null && end != null) {
+ geo.vertices.push(new TV3(start.x, start.y, start.z));
+ geo.colors.push(new TCo(start.color));
+ geo.vertices.push(new TV3(end.x, end.y, end.z));
+ geo.colors.push(new TCo(start.color));
+ }
+ start = null; end = null;
+ }
+ if (atom.atom == 'O3\'') start = atom;
+ if (atom.resn == ' A' || atom.resn == ' G' || atom.resn == ' DA' || atom.resn == ' DG') {
+ if (atom.atom == 'N1') end = atom; // N1(AG), N3(CTU)
+ } else if (atom.atom == 'N3') {
+ end = atom;
+ }
+ currentResi = atom.resi; currentChain = atom.chain;
+ }
+ if (start != null && end != null) {
+ geo.vertices.push(new TV3(start.x, start.y, start.z));
+ geo.colors.push(new TCo(start.color));
+ geo.vertices.push(new TV3(end.x, end.y, end.z));
+ geo.colors.push(new TCo(start.color));
+ }
+ var mat = new THREE.LineBasicMaterial({linewidth: 1, linejoin: false});
+ mat.linewidth = 1.5; mat.vertexColors = true;
+ var line = new THREE.Line(geo, mat, THREE.LinePieces);
+ group.add(line);
+};
+
+GLmol.prototype.drawCartoonNucleicAcid = function(group, atomlist, div, thickness) {
+ this.drawStrandNucleicAcid(group, atomlist, 2, div, true, undefined, thickness);
+};
+
+GLmol.prototype.drawStrandNucleicAcid = function(group, atomlist, num, div, fill, nucleicAcidWidth, thickness) {
+ nucleicAcidWidth = nucleicAcidWidth || this.nucleicAcidWidth;
+ div = div || this.axisDIV;
+ num = num || this.nucleicAcidStrandDIV;
+ var points = []; for (var k = 0; k < num; k++) points[k] = [];
+ var colors = [];
+ var currentChain, currentResi, currentO3;
+ var prevOO = null;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]];
+ if (atom == undefined) continue;
+
+ if ((atom.atom == 'O3\'' || atom.atom == 'OP2') && !atom.hetflag) {
+ if (atom.atom == 'O3\'') { // to connect 3' end. FIXME: better way to do?
+ if (currentChain != atom.chain || currentResi + 1 != atom.resi) {
+ if (currentO3) {
+ for (var j = 0; j < num; j++) {
+ var delta = -1 + 2 / (num - 1) * j;
+ points[j].push(new TV3(currentO3.x + prevOO.x * delta,
+ currentO3.y + prevOO.y * delta, currentO3.z + prevOO.z * delta));
+ }
+ }
+ if (fill) this.drawStrip(group, points[0], points[1], colors, div, thickness);
+ for (var j = 0; !thickness && j < num; j++)
+ this.drawSmoothCurve(group, points[j], 1 ,colors, div);
+ var points = []; for (var k = 0; k < num; k++) points[k] = [];
+ colors = [];
+ prevOO = null;
+ }
+ currentO3 = new TV3(atom.x, atom.y, atom.z);
+ currentChain = atom.chain;
+ currentResi = atom.resi;
+ colors.push(atom.color);
+ } else { // OP2
+ if (!currentO3) {prevOO = null; continue;} // for 5' phosphate (e.g. 3QX3)
+ var O = new TV3(atom.x, atom.y, atom.z);
+ O.subSelf(currentO3);
+ O.normalize().multiplyScalar(nucleicAcidWidth); // TODO: refactor
+ if (prevOO != undefined && O.dot(prevOO) < 0) {
+ O.negate();
+ }
+ prevOO = O;
+ for (var j = 0; j < num; j++) {
+ var delta = -1 + 2 / (num - 1) * j;
+ points[j].push(new TV3(currentO3.x + prevOO.x * delta,
+ currentO3.y + prevOO.y * delta, currentO3.z + prevOO.z * delta));
+ }
+ currentO3 = null;
+ }
+ }
+ }
+ if (currentO3) {
+ for (var j = 0; j < num; j++) {
+ var delta = -1 + 2 / (num - 1) * j;
+ points[j].push(new TV3(currentO3.x + prevOO.x * delta,
+ currentO3.y + prevOO.y * delta, currentO3.z + prevOO.z * delta));
+ }
+ }
+ if (fill) this.drawStrip(group, points[0], points[1], colors, div, thickness);
+ for (var j = 0; !thickness && j < num; j++)
+ this.drawSmoothCurve(group, points[j], 1 ,colors, div);
+};
+
+GLmol.prototype.drawDottedLines = function(group, points, color) {
+ var geo = new THREE.Geometry();
+ var step = 0.3;
+
+ for (var i = 0, lim = Math.floor(points.length / 2); i < lim; i++) {
+ var p1 = points[2 * i], p2 = points[2 * i + 1];
+ var delta = p2.clone().subSelf(p1);
+ var dist = delta.length();
+ delta.normalize().multiplyScalar(step);
+ var jlim = Math.floor(dist / step);
+ for (var j = 0; j < jlim; j++) {
+ var p = new TV3(p1.x + delta.x * j, p1.y + delta.y * j, p1.z + delta.z * j);
+ geo.vertices.push(p);
+ }
+ if (jlim % 2 == 1) geo.vertices.push(p2);
+ }
+
+ var mat = new THREE.LineBasicMaterial({'color': color.getHex()});
+ mat.linewidth = 2;
+ var line = new THREE.Line(geo, mat, THREE.LinePieces);
+ group.add(line);
+};
+
+GLmol.prototype.getAllAtoms = function() {
+ var ret = [];
+ for (var i in this.atoms) {
+ ret.push(this.atoms[i].serial);
+ }
+ return ret;
+};
+
+// Probably I can refactor using higher-order functions.
+GLmol.prototype.getHetatms = function(atomlist) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.removeSolvents = function(atomlist) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.resn != 'HOH') ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.getProteins = function(atomlist) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (!atom.hetflag) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+// TODO: Test
+GLmol.prototype.excludeAtoms = function(atomlist, deleteList) {
+ var ret = [];
+ var blackList = new Object();
+ for (var _i in deleteList) blackList[deleteList[_i]] = true;
+
+ for (var _i in atomlist) {
+ var i = atomlist[_i];
+
+ if (!blackList[i]) ret.push(i);
+ }
+ return ret;
+};
+
+GLmol.prototype.getSidechains = function(atomlist) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag) continue;
+ if (atom.atom == 'C' || atom.atom == 'O' || (atom.atom == 'N' && atom.resn != "PRO")) continue;
+ ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.getAtomsWithin = function(atomlist, extent) {
+ var ret = [];
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.x < extent[0][0] || atom.x > extent[1][0]) continue;
+ if (atom.y < extent[0][1] || atom.y > extent[1][1]) continue;
+ if (atom.z < extent[0][2] || atom.z > extent[1][2]) continue;
+ ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.getExtent = function(atomlist) {
+ var xmin = ymin = zmin = 9999;
+ var xmax = ymax = zmax = -9999;
+ var xsum = ysum = zsum = cnt = 0;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+ cnt++;
+ xsum += atom.x; ysum += atom.y; zsum += atom.z;
+
+ xmin = (xmin < atom.x) ? xmin : atom.x;
+ ymin = (ymin < atom.y) ? ymin : atom.y;
+ zmin = (zmin < atom.z) ? zmin : atom.z;
+ xmax = (xmax > atom.x) ? xmax : atom.x;
+ ymax = (ymax > atom.y) ? ymax : atom.y;
+ zmax = (zmax > atom.z) ? zmax : atom.z;
+ }
+ return [[xmin, ymin, zmin], [xmax, ymax, zmax], [xsum / cnt, ysum / cnt, zsum / cnt]];
+};
+
+GLmol.prototype.getResiduesById = function(atomlist, resi) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (resi.indexOf(atom.resi) != -1) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.getResidueBySS = function(atomlist, ss) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (ss.indexOf(atom.ss) != -1) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.getChain = function(atomlist, chain) {
+ var ret = [], chains = {};
+ chain = chain.toString(); // concat if Array
+ for (var i = 0, lim = chain.length; i < lim; i++) chains[chain.substr(i, 1)] = true;
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (chains[atom.chain]) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+// for HETATM only
+GLmol.prototype.getNonbonded = function(atomlist, chain) {
+ var ret = [];
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag && atom.bonds.length == 0) ret.push(atom.serial);
+ }
+ return ret;
+};
+
+GLmol.prototype.colorByAtom = function(atomlist, colors) {
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ var c = colors[atom.elem];
+ if (c == undefined) c = this.ElementColors[atom.elem];
+ if (c == undefined) c = this.defaultColor;
+ atom.color = c;
+ }
+};
+
+
+// MEMO: Color only CA. maybe I should add atom.cartoonColor.
+GLmol.prototype.colorByStructure = function(atomlist, helixColor, sheetColor, colorSidechains) {
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (!colorSidechains && (atom.atom != 'CA' || atom.hetflag)) continue;
+ if (atom.ss[0] == 's') atom.color = sheetColor;
+ else if (atom.ss[0] == 'h') atom.color = helixColor;
+ }
+};
+
+GLmol.prototype.colorByBFactor = function(atomlist, colorSidechains) {
+ var minB = 1000, maxB = -1000;
+
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag) continue;
+ if (colorSidechains || atom.atom == 'CA' || atom.atom == 'O3\'') {
+ if (minB > atom.b) minB = atom.b;
+ if (maxB < atom.b) maxB = atom.b;
+ }
+ }
+
+ var mid = (maxB + minB) / 2;
+
+ var range = (maxB - minB) / 2;
+ if (range < 0.01 && range > -0.01) return;
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag) continue;
+ if (colorSidechains || atom.atom == 'CA' || atom.atom == 'O3\'') {
+ var color = new TCo(0);
+ if (atom.b < mid)
+ color.setHSV(0.667, (mid - atom.b) / range, 1);
+ else
+ color.setHSV(0, (atom.b - mid) / range, 1);
+ atom.color = color.getHex();
+ }
+ }
+};
+
+GLmol.prototype.colorByChain = function(atomlist, colorSidechains) {
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if (atom.hetflag) continue;
+ if (colorSidechains || atom.atom == 'CA' || atom.atom == 'O3\'') {
+ var color = new TCo(0);
+ color.setHSV((atom.chain.charCodeAt(0) * 5) % 17 / 17.0, 1, 0.9);
+ atom.color = color.getHex();
+ }
+ }
+};
+
+GLmol.prototype.colorByResidue = function(atomlist, residueColors) {
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ c = residueColors[atom.resn]
+ if (c != undefined) atom.color = c;
+ }
+};
+
+GLmol.prototype.colorAtoms = function(atomlist, c) {
+ for (var i in atomlist) {
+ var atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ atom.color = c;
+ }
+};
+
+GLmol.prototype.colorByPolarity = function(atomlist, polar, nonpolar) {
+ var polarResidues = ['ARG', 'HIS', 'LYS', 'ASP', 'GLU', 'SER', 'THR', 'ASN', 'GLN', 'CYS'];
+ var nonPolarResidues = ['GLY', 'PRO', 'ALA', 'VAL', 'LEU', 'ILE', 'MET', 'PHE', 'TYR', 'TRP'];
+ var colorMap = {};
+ for (var i in polarResidues) colorMap[polarResidues[i]] = polar;
+ for (i in nonPolarResidues) colorMap[nonPolarResidues[i]] = nonpolar;
+ this.colorByResidue(atomlist, colorMap);
+};
+
+// TODO: Add near(atomlist, neighbor, distanceCutoff)
+// TODO: Add expandToResidue(atomlist)
+
+GLmol.prototype.colorChainbow = function(atomlist, colorSidechains) {
+ var cnt = 0;
+ var atom, i;
+ for (i in atomlist) {
+ atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if ((colorSidechains || atom.atom != 'CA' || atom.atom != 'O3\'') && !atom.hetflag)
+ cnt++;
+ }
+
+ var total = cnt;
+ cnt = 0;
+ for (i in atomlist) {
+ atom = this.atoms[atomlist[i]]; if (atom == undefined) continue;
+
+ if ((colorSidechains || atom.atom != 'CA' || atom.atom != 'O3\'') && !atom.hetflag) {
+ var color = new TCo(0);
+ color.setHSV(240.0 / 360 * (1 - cnt / total), 1, 0.9);
+ atom.color = color.getHex();
+ cnt++;
+ }
+ }
+};
+
+GLmol.prototype.drawSymmetryMates2 = function(group, asu, matrices) {
+ if (matrices == undefined) return;
+ asu.matrixAutoUpdate = false;
+
+ var cnt = 1;
+ this.protein.appliedMatrix = new THREE.Matrix4();
+ for (var i = 0; i < matrices.length; i++) {
+ var mat = matrices[i];
+ if (mat == undefined || mat.isIdentity()) continue;
+ console.log(mat);
+ var symmetryMate = THREE.SceneUtils.cloneObject(asu);
+ symmetryMate.matrix = mat;
+ group.add(symmetryMate);
+ for (var j = 0; j < 16; j++) this.protein.appliedMatrix.elements[j] += mat.elements[j];
+ cnt++;
+ }
+ this.protein.appliedMatrix.multiplyScalar(cnt);
+};
+
+
+GLmol.prototype.drawSymmetryMatesWithTranslation2 = function(group, asu, matrices) {
+ if (matrices == undefined) return;
+ var p = this.protein;
+ asu.matrixAutoUpdate = false;
+
+ for (var i = 0; i < matrices.length; i++) {
+ var mat = matrices[i];
+ if (mat == undefined) continue;
+
+ for (var a = -1; a <=0; a++) {
+ for (var b = -1; b <= 0; b++) {
+ for (var c = -1; c <= 0; c++) {
+ var translationMat = new THREE.Matrix4().makeTranslation(
+ p.ax * a + p.bx * b + p.cx * c,
+ p.ay * a + p.by * b + p.cy * c,
+ p.az * a + p.bz * b + p.cz * c);
+ var symop = mat.clone().multiplySelf(translationMat);
+ if (symop.isIdentity()) continue;
+ var symmetryMate = THREE.SceneUtils.cloneObject(asu);
+ symmetryMate.matrix = symop;
+ group.add(symmetryMate);
+ }
+ }
+ }
+ }
+};
+
+GLmol.prototype.defineRepresentation = function() {
+ var all = this.getAllAtoms();
+ var hetatm = this.removeSolvents(this.getHetatms(all));
+ this.colorByAtom(all, {});
+ this.colorByChain(all);
+
+ this.drawAtomsAsSphere(this.modelGroup, hetatm, this.sphereRadius);
+ this.drawMainchainCurve(this.modelGroup, all, this.curveWidth, 'P');
+ this.drawCartoon(this.modelGroup, all, this.curveWidth);
+};
+
+GLmol.prototype.getView = function() {
+ if (!this.modelGroup) return [0, 0, 0, 0, 0, 0, 0, 1];
+ var pos = this.modelGroup.position;
+ var q = this.rotationGroup.quaternion;
+ return [pos.x, pos.y, pos.z, this.rotationGroup.position.z, q.x, q.y, q.z, q.w];
+};
+
+GLmol.prototype.setView = function(arg) {
+ if (!this.modelGroup || !this.rotationGroup) return;
+ this.modelGroup.position.x = arg[0];
+ this.modelGroup.position.y = arg[1];
+ this.modelGroup.position.z = arg[2];
+ this.rotationGroup.position.z = arg[3];
+ this.rotationGroup.quaternion.x = arg[4];
+ this.rotationGroup.quaternion.y = arg[5];
+ this.rotationGroup.quaternion.z = arg[6];
+ this.rotationGroup.quaternion.w = arg[7];
+ this.show();
+};
+
+GLmol.prototype.setBackground = function(hex, a) {
+ a = a | 1.0;
+ this.bgColor = hex;
+ this.renderer.setClearColorHex(hex, a);
+ this.scene.fog.color = new TCo(hex);
+};
+
+GLmol.prototype.initializeScene = function() {
+ // CHECK: Should I explicitly call scene.deallocateObject?
+ this.scene = new THREE.Scene();
+ this.scene.fog = new THREE.Fog(this.bgColor, 100, 200);
+
+ this.modelGroup = new THREE.Object3D();
+ this.rotationGroup = new THREE.Object3D();
+ this.rotationGroup.useQuaternion = true;
+ this.rotationGroup.quaternion = new THREE.Quaternion(1, 0, 0, 0);
+ this.rotationGroup.add(this.modelGroup);
+
+ this.scene.add(this.rotationGroup);
+ this.setupLights(this.scene);
+};
+
+GLmol.prototype.zoomInto = function(atomlist, keepSlab) {
+ var tmp = this.getExtent(atomlist);
+ var center = new TV3(tmp[2][0], tmp[2][1], tmp[2][2]);//(tmp[0][0] + tmp[1][0]) / 2, (tmp[0][1] + tmp[1][1]) / 2, (tmp[0][2] + tmp[1][2]) / 2);
+ if (this.protein.appliedMatrix) {center = this.protein.appliedMatrix.multiplyVector3(center);}
+ this.modelGroup.position = center.multiplyScalar(-1);
+ var x = tmp[1][0] - tmp[0][0], y = tmp[1][1] - tmp[0][1], z = tmp[1][2] - tmp[0][2];
+
+ var maxD = Math.sqrt(x * x + y * y + z * z);
+ if (maxD < 25) maxD = 25;
+
+ if (!keepSlab) {
+ this.slabNear = -maxD / 1.9;
+ this.slabFar = maxD / 3;
+ }
+
+ this.rotationGroup.position.z = maxD * 0.35 / Math.tan(Math.PI / 180.0 * this.camera.fov / 2) - 150;
+ this.rotationGroup.quaternion = new THREE.Quaternion(1, 0, 0, 0);
+};
+
+GLmol.prototype.rebuildScene = function() {
+ time = new Date();
+
+ var view = this.getView();
+ this.initializeScene();
+ this.defineRepresentation();
+ this.setView(view);
+
+ console.log("builded scene in " + (+new Date() - time) + "ms");
+};
+
+GLmol.prototype.loadMolecule = function(repressZoom) {
+ this.loadMoleculeStr(repressZoom, $('#' + this.id + '_src').val());
+};
+
+GLmol.prototype.loadMoleculeStr = function(repressZoom, source) {
+ var time = new Date();
+
+ this.protein = {sheet: [], helix: [], biomtChains: '', biomtMatrices: [], symMat: [], pdbID: '', title: ''};
+ this.atoms = [];
+
+ this.parsePDB2(source);
+ if (!this.parseSDF(source)) this.parseXYZ(source);
+ console.log("parsed in " + (+new Date() - time) + "ms");
+
+ var title = $('#' + this.id + '_pdbTitle');
+ var titleStr = '';
+ if (this.protein.pdbID != '') titleStr += '<a href="http://www.rcsb.org/pdb/explore/explore.do?structureId=' + this.protein.pdbID + '">' + this.protein.pdbID + '</a>';
+ if (this.protein.title != '') titleStr += '<br>' + this.protein.title;
+ title.html(titleStr);
+
+ this.rebuildScene(true);
+ if (repressZoom == undefined || !repressZoom) this.zoomInto(this.getAllAtoms());
+
+ this.show();
+ };
+
+GLmol.prototype.setSlabAndFog = function() {
+ var center = this.rotationGroup.position.z - this.camera.position.z;
+ if (center < 1) center = 1;
+ this.camera.near = center + this.slabNear;
+ if (this.camera.near < 1) this.camera.near = 1;
+ this.camera.far = center + this.slabFar;
+ if (this.camera.near + 1 > this.camera.far) this.camera.far = this.camera.near + 1;
+ if (this.camera instanceof THREE.PerspectiveCamera) {
+ this.camera.fov = this.fov;
+ } else {
+ this.camera.right = center * Math.tan(Math.PI / 180 * this.fov);
+ this.camera.left = - this.camera.right;
+ this.camera.top = this.camera.right / this.ASPECT;
+ this.camera.bottom = - this.camera.top;
+ }
+ this.camera.updateProjectionMatrix();
+ this.scene.fog.near = this.camera.near + this.fogStart * (this.camera.far - this.camera.near);
+// if (this.scene.fog.near > center) this.scene.fog.near = center;
+ this.scene.fog.far = this.camera.far;
+};
+
+GLmol.prototype.enableMouse = function() {
+ var me = this, glDOM = $(this.renderer.domElement);
+
+ // TODO: Better touch panel support.
+ // Contribution is needed as I don't own any iOS or Android device with WebGL support.
+ glDOM.bind('mousedown touchstart', function(ev) {
+ ev.preventDefault();
+ if (!me.scene) return;
+ var x = ev.pageX, y = ev.pageY;
+ if (ev.originalEvent.targetTouches && ev.originalEvent.targetTouches[0]) {
+ x = ev.originalEvent.targetTouches[0].pageX;
+ y = ev.originalEvent.targetTouches[0].pageY;
+ }
+ if (x == undefined) return;
+ me.isDragging = true;
+ me.mouseButton = ev.which;
+ me.mouseStartX = x;
+ me.mouseStartY = y;
+ me.cq = me.rotationGroup.quaternion;
+ me.cz = me.rotationGroup.position.z;
+ me.currentModelPos = me.modelGroup.position.clone();
+ me.cslabNear = me.slabNear;
+ me.cslabFar = me.slabFar;
+ });
+
+ glDOM.bind('DOMMouseScroll mousewheel', function(ev) { // Zoom
+ ev.preventDefault();
+ if (!me.scene) return;
+ var scaleFactor = (me.rotationGroup.position.z - me.CAMERA_Z) * 0.85;
+ if (ev.originalEvent.detail) { // Webkit
+ me.rotationGroup.position.z += scaleFactor * ev.originalEvent.detail / 10;
+ } else if (ev.originalEvent.wheelDelta) { // Firefox
+ me.rotationGroup.position.z -= scaleFactor * ev.originalEvent.wheelDelta / 400;
+ }
+ console.log(ev.originalEvent.wheelDelta, ev.originalEvent.detail, me.rotationGroup.position.z);
+ me.show();
+ });
+ glDOM.bind("contextmenu", function(ev) {ev.preventDefault();});
+ $('body').bind('mouseup touchend', function(ev) {
+ me.isDragging = false;
+ });
+
+ glDOM.bind('mousemove touchmove', function(ev) { // touchmove
+ ev.preventDefault();
+ if (!me.scene) return;
+ if (!me.isDragging) return;
+ var mode = 0;
+ var modeRadio = $('input[name=' + me.id + '_mouseMode]:checked');
+ if (modeRadio.length > 0) mode = parseInt(modeRadio.val());
+
+ var x = ev.pageX, y = ev.pageY;
+ if (ev.originalEvent.targetTouches && ev.originalEvent.targetTouches[0]) {
+ x = ev.originalEvent.targetTouches[0].pageX;
+ y = ev.originalEvent.targetTouches[0].pageY;
+ }
+ if (x == undefined) return;
+ var dx = (x - me.mouseStartX) / me.WIDTH;
+ var dy = (y - me.mouseStartY) / me.HEIGHT;
+ var r = Math.sqrt(dx * dx + dy * dy);
+ if (mode == 3 || (me.mouseButton == 3 && ev.ctrlKey)) { // Slab
+ me.slabNear = me.cslabNear + dx * 100;
+ me.slabFar = me.cslabFar + dy * 100;
+ } else if (mode == 2 || me.mouseButton == 3 || ev.shiftKey) { // Zoom
+ var scaleFactor = (me.rotationGroup.position.z - me.CAMERA_Z) * 0.85;
+ if (scaleFactor < 80) scaleFactor = 80;
+ me.rotationGroup.position.z = me.cz - dy * scaleFactor;
+ } else if (mode == 1 || me.mouseButton == 2 || ev.ctrlKey) { // Translate
+ var scaleFactor = (me.rotationGroup.position.z - me.CAMERA_Z) * 0.85;
+ if (scaleFactor < 20) scaleFactor = 20;
+ var translationByScreen = new TV3(- dx * scaleFactor, - dy * scaleFactor, 0);
+ var q = me.rotationGroup.quaternion;
+ var qinv = new THREE.Quaternion(q.x, q.y, q.z, q.w).inverse().normalize();
+ var translation = qinv.multiplyVector3(translationByScreen);
+ me.modelGroup.position.x = me.currentModelPos.x + translation.x;
+ me.modelGroup.position.y = me.currentModelPos.y + translation.y;
+ me.modelGroup.position.z = me.currentModelPos.z + translation.z;
+ } else if ((mode == 0 || me.mouseButton == 1) && r != 0) { // Rotate
+ var rs = Math.sin(r * Math.PI) / r;
+ me.dq.x = Math.cos(r * Math.PI);
+ me.dq.y = 0;
+ me.dq.z = rs * dx;
+ me.dq.w = rs * dy;
+ me.rotationGroup.quaternion = new THREE.Quaternion(1, 0, 0, 0);
+ me.rotationGroup.quaternion.multiplySelf(me.dq);
+ me.rotationGroup.quaternion.multiplySelf(me.cq);
+ }
+ me.show();
+ });
+};
+
+
+GLmol.prototype.show = function() {
+ if (!this.scene) return;
+
+ var time = new Date();
+ this.setSlabAndFog();
+ this.renderer.render(this.scene, this.camera);
+ console.log("rendered in " + (+new Date() - time) + "ms");
+};
+
+// For scripting
+GLmol.prototype.doFunc = function(func) {
+ func(this);
+};
+
+return GLmol;
+}());