svn commit: r1663222 - /incubator/taverna/site/trunk/content/introduction/taverna-in-use/protein-and-proteomics.md

[br...@apache.org]

Author: brenninc
Date: Mon Mar  2 09:23:40 2015
New Revision: 1663222

URL: http://svn.apache.org/r1663222
Log:
Protein and proteomics

Added:
    incubator/taverna/site/trunk/content/introduction/taverna-in-use/protein-and-proteomics.md

Added: incubator/taverna/site/trunk/content/introduction/taverna-in-use/protein-and-proteomics.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/introduction/taverna-in-use/protein-and-proteomics.md?rev=1663222&view=auto
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--- incubator/taverna/site/trunk/content/introduction/taverna-in-use/protein-and-proteomics.md (added)
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+Title:     Protein and proteomics
+Notice:    Licensed to the Apache Software Foundation (ASF) under one
+           or more contributor license agreements.  See the NOTICE file
+           distributed with this work for additional information
+           regarding copyright ownership.  The ASF licenses this file
+           to you under the Apache License, Version 2.0 (the
+           "License"); you may not use this file except in compliance
+           with the License.  You may obtain a copy of the License at
+           .
+             http://www.apache.org/licenses/LICENSE-2.0
+           .
+           Unless required by applicable law or agreed to in writing,
+           software distributed under the License is distributed on an
+           "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+           KIND, either express or implied.  See the License for the
+           specific language governing permissions and limitations
+           under the License.
+
+Taverna is used by various projects and researchers for the analysis of proteins and proteomics:
+
+ - [Anthrax analysis](/introduction/taverna-in-use/disease-research#analysis-of-anthrax-bacterium) - 
+   identification of proteins secreted by bacteria>
+ - [eFamily](/introduction/taverna-in-use/databases#efamily) - integrating data from different databases
+ - [European Model for Bioinformatics Research And Community Education](http://www.mygrid.org.uk/mygrid-in-use/adoption-by-embrace)
+      (EMBRACE) - calling services on a grid; recovering a database
+ - [iSpider](/introduction/related-projects/ispider) - querying multiple data sources
+ - [ProDom](#prodom) -running of Taverna workflows behind a portal to search a protein database
+
+< a name="prodom"></a>
+##ProDom
+
+[ProDom](http://prodom.prabi.fr/) is a comprehensive database of protein domain families generated 
+   from the global comparison of all available protein sequences. 
+It was developed at the Rhône-Alpes Bioinformatics Center ([PRABI](http://www.prabi.fr/)).
+
+ProDom is described in the [paper](http://dx.doi.org/10.1093/nar/gki034) 
+   *The ProDom database of protein domain families: more emphasis on 3D * by Bru et al.
+
+A Web-based front-end is [available](http://prodom.prabi.fr/prodom/current/html/form.php)
+   to perform searches and comparisons on the content of the database.
+
+Some of the queries used by the front-end make use of Taverna 
+   [workflows](http://prodom.prabi.fr/prodom/current/html/webservices.html).