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Posted to issues@airavata.apache.org by "Dimuthu (Jira)" <ji...@apache.org> on 2023/03/03 16:38:00 UTC
[jira] [Commented] (AIRAVATA-3683) Implement merge of application inputs on command line and pre job commands for Condor job submissions
[ https://issues.apache.org/jira/browse/AIRAVATA-3683?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17696214#comment-17696214 ]
Dimuthu commented on AIRAVATA-3683:
-----------------------------------
Fixed in https://github.com/apache/airavata/commit/5836029d0e0237552afa1d2751e491aa734062b1
> Implement merge of application inputs on command line and pre job commands for Condor job submissions
> ------------------------------------------------------------------------------------------------------
>
> Key: AIRAVATA-3683
> URL: https://issues.apache.org/jira/browse/AIRAVATA-3683
> Project: Airavata
> Issue Type: Task
> Components: Airavata System, helix implementation
> Reporter: Eroma
> Assignee: Dimuthu
> Priority: Major
>
> This implementation is required for HTCondor job submissions.
> Currently the pre job commands need to be enabled as well as merge with the printing input files on command line through application interface.
>
> Pre job command (currently not printed on job script)
> transfer_input_files = receptor.pdbqt, ligand1.pdbqt, config, autodock_vina_1_1_ 2_linux_x86.tgz, vina_wrapper.bash
>
> Due to printing input files on command line, below line printed in the job script (without the arguments)
> transfer_input_files = receptor.pdbqt, ligand1.pdbqt, config,
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