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Posted to dev@arrow.apache.org by "Sam Albers (Jira)" <ji...@apache.org> on 2020/03/11 16:21:00 UTC
[jira] [Created] (ARROW-8075) Loading R.utils after arrow breaks
some arrow functions
Sam Albers created ARROW-8075:
---------------------------------
Summary: Loading R.utils after arrow breaks some arrow functions
Key: ARROW-8075
URL: https://issues.apache.org/jira/browse/ARROW-8075
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 0.16.0
Environment: - Session info ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
setting value
version R version 3.6.3 (2020-02-29)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_Canada.1252
ctype English_Canada.1252
tz America/Los_Angeles
date 2020-03-11
- Packages --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
package * version date lib source
arrow * 0.16.0.2 2020-02-14 [1] CRAN (R 3.6.2)
assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0)
backports 1.1.5 2019-10-02 [1] CRAN (R 3.6.1)
bit 1.1-15.2 2020-02-10 [1] CRAN (R 3.6.2)
bit64 0.9-7 2017-05-08 [1] CRAN (R 3.6.0)
callr 3.4.2 2020-02-12 [1] CRAN (R 3.6.2)
cli 2.0.2 2020-02-28 [1] CRAN (R 3.6.2)
crayon 1.3.4 2017-09-16 [1] CRAN (R 3.6.0)
desc 1.2.0 2018-05-01 [1] CRAN (R 3.6.0)
devtools 2.2.2 2020-02-17 [1] CRAN (R 3.6.2)
digest 0.6.25 2020-02-23 [1] CRAN (R 3.6.2)
ellipsis 0.3.0 2019-09-20 [1] CRAN (R 3.6.1)
fansi 0.4.1 2020-01-08 [1] CRAN (R 3.6.2)
fs 1.3.1 2019-05-06 [1] CRAN (R 3.6.0)
glue 1.3.1 2019-03-12 [1] CRAN (R 3.6.0)
magrittr 1.5 2014-11-22 [1] CRAN (R 3.6.0)
memoise 1.1.0 2017-04-21 [1] CRAN (R 3.6.0)
packrat 0.5.0 2018-11-14 [1] CRAN (R 3.6.0)
pkgbuild 1.0.6 2019-10-09 [1] CRAN (R 3.6.1)
pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.6.0)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 3.6.2)
processx 3.4.2 2020-02-09 [1] CRAN (R 3.6.2)
ps 1.3.2 2020-02-13 [1] CRAN (R 3.6.2)
purrr 0.3.3 2019-10-18 [1] CRAN (R 3.6.1)
R.methodsS3 * 1.8.0 2020-02-14 [1] CRAN (R 3.6.2)
R.oo * 1.23.0 2019-11-03 [1] CRAN (R 3.6.1)
R.utils * 2.9.2 2019-12-08 [1] CRAN (R 3.6.1)
R6 2.4.1 2019-11-12 [1] CRAN (R 3.6.1)
Rcpp 1.0.3 2019-11-08 [1] CRAN (R 3.6.1)
remotes 2.1.1 2020-02-15 [1] CRAN (R 3.6.2)
rlang 0.4.4 2020-01-28 [1] CRAN (R 3.6.2)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.6.0)
rstudioapi 0.11 2020-02-07 [1] CRAN (R 3.6.2)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.0)
testthat 2.3.1 2019-12-01 [1] CRAN (R 3.6.2)
tidyselect 1.0.0 2020-01-27 [1] CRAN (R 3.6.2)
usethis 1.5.1.9000 2020-01-31 [1] Github (r-lib/usethis@c31336d)
vctrs 0.2.3 2020-02-20 [1] CRAN (R 3.6.2)
withr 2.1.2 2018-03-15 [1] CRAN (R 3.6.0)
[1] C:/Users/salbers/R/win-library/3.6
[2] C:/Program Files/R/R-3.6.3/library
Reporter: Sam Albers
I am writing this as an FYI because it caught me today. My hope is that maybe this will one day help solve a bug or act as a clue if/when you encounter this behaviour. I don't have any time at the moment to track exactly what is happening so unfortunately I am just sharing as is. The issue is when one loads the R.utils package after loading arrow. Again likely this is an issue related to R.utils and therefore not strictly a bug in arrow. Still thought it would be useful to share:
{code:java}
library(arrow)
#>
#> Attaching package: 'arrow'
#> The following object is masked from 'package:utils':
#>
#> timestamp
write_parquet(iris, 'iris.parquet')
pq <- ParquetFileReader$create('iris.parquet')
library(R.utils)
#> Loading required package: R.oo
#> Loading required package: R.methodsS3
#> R.methodsS3 v1.8.0 (2020-02-14 07:10:20 UTC) successfully loaded. See ?R.methodsS3 for help.
#> R.oo v1.23.0 successfully loaded. See ?R.oo for help.
#>
#> Attaching package: 'R.oo'
#> The following object is masked from 'package:R.methodsS3':
#>
#> throw
#> The following objects are masked from 'package:methods':
#>
#> getClasses, getMethods
#> The following objects are masked from 'package:base':
#>
#> attach, detach, load, save
#> R.utils v2.9.2 successfully loaded. See ?R.utils for help.
#>
#> Attaching package: 'R.utils'
#> The following object is masked from 'package:arrow':
#>
#> timestamp
#> The following object is masked from 'package:utils':
#>
#> timestamp
#> The following objects are masked from 'package:base':
#>
#> cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
#> warnings
pq <- ParquetFileReader$create('iris.parquet')
#> Error in exists(name, envir = envir, inherits = FALSE): use of NULL environment is defunct
{code}
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