You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@drill.apache.org by "Paul Rogers (JIRA)" <ji...@apache.org> on 2017/05/10 23:37:04 UTC
[jira] [Updated] (DRILL-5470) Offset vector data corruption on CSV
data
[ https://issues.apache.org/jira/browse/DRILL-5470?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Paul Rogers updated DRILL-5470:
-------------------------------
Summary: Offset vector data corruption on CSV data (was: CSV reader data corruption on truncated lines)
> Offset vector data corruption on CSV data
> -----------------------------------------
>
> Key: DRILL-5470
> URL: https://issues.apache.org/jira/browse/DRILL-5470
> Project: Apache Drill
> Issue Type: Bug
> Components: Server
> Affects Versions: 1.10.0
> Environment: - ubuntu 14.04
> - r3.8xl (32 CPU/240GB Mem)
> - openjdk version "1.8.0_111"
> - drill 1.10.0 with 8656c83b00f8ab09fb6817e4e9943b2211772541 cherry-picked
> Reporter: Nathan Butler
> Assignee: Paul Rogers
> Priority: Critical
>
> Per the mailing list discussion and Rahul's and Paul's suggestion I'm filing this Jira issue. Drill seems to be running out of memory when doing an External Sort. Per Zelaine's suggestion I enabled sort.external.disable_managed in drill-override.conf and in the sqlline session. This caused the query to run for longer but it still would fail with the same message.
> Per Paul's suggestion, I enabled debug logging for the org.apache.drill.exec.physical.impl.xsort.managed package and re-ran the query.
> Here's the initial DEBUG line for ExternalSortBatch for our query:
> bq. 2017-05-03 12:02:56,095 [26f600f1-17b3-d649-51be-2ca0c9bf7606:frag:2:15] DEBUG o.a.d.e.p.i.x.m.ExternalSortBatch - Config: memory limit = 10737418240, spill file size = 268435456, spill batch size = 8388608, merge limit = 2147483647, merge batch size = 16777216
> And here's the last DEBUG line before the stack trace:
> bq. 2017-05-03 12:37:44,249 [26f600f1-17b3-d649-51be-2ca0c9bf7606:frag:2:4] DEBUG o.a.d.e.p.i.x.m.ExternalSortBatch - Available memory: 10737418240, buffer memory = 10719535268, merge memory = 10707140978
> And the stacktrace:
> {quote}
> 2017-05-03 12:38:02,927 [26f600f1-17b3-d649-51be-2ca0c9bf7606:frag:2:6] INFO o.a.d.e.p.i.x.m.ExternalSortBatch - User Error Occurred: External Sort encountered an error while spilling to disk (Un
> able to allocate buffer of size 268435456 due to memory limit. Current allocation: 10579849472)
> org.apache.drill.common.exceptions.UserException: RESOURCE ERROR: External Sort encountered an error while spilling to disk
> [Error Id: 5d53c677-0cd9-4c01-a664-c02089670a1c ]
> at org.apache.drill.common.exceptions.UserException$Builder.build(UserException.java:544) ~[drill-common-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.doMergeAndSpill(ExternalSortBatch.java:1447) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.mergeAndSpill(ExternalSortBatch.java:1376) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.spillFromMemory(ExternalSortBatch.java:1339) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.processBatch(ExternalSortBatch.java:831) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.loadBatch(ExternalSortBatch.java:618) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.load(ExternalSortBatch.java:660) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.innerNext(ExternalSortBatch.java:559) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:119) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:109) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.aggregate.StreamingAggBatch.innerNext(StreamingAggBatch.java:137) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.record.AbstractRecordBatch.next(AbstractRecordBatch.java:162) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.BaseRootExec.next(BaseRootExec.java:104) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.partitionsender.PartitionSenderRootExec.innerNext(PartitionSenderRootExec.java:144) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.BaseRootExec.next(BaseRootExec.java:94) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.work.fragment.FragmentExecutor$1.run(FragmentExecutor.java:232) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.work.fragment.FragmentExecutor$1.run(FragmentExecutor.java:226) [drill-java-exec-1.10.0.jar:1.10.0]
> at java.security.AccessController.doPrivileged(Native Method) [na:1.8.0_111]
> at javax.security.auth.Subject.doAs(Subject.java:422) [na:1.8.0_111]
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1657) [hadoop-common-2.7.1.jar:na]
> at org.apache.drill.exec.work.fragment.FragmentExecutor.run(FragmentExecutor.java:226) [drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.common.SelfCleaningRunnable.run(SelfCleaningRunnable.java:38) [drill-common-1.10.0.jar:1.10.0]
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111]
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111]
> at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111]
> Caused by: org.apache.drill.exec.exception.OutOfMemoryException: Unable to allocate buffer of size 268435456 due to memory limit. Current allocation: 10579849472
> at org.apache.drill.exec.memory.BaseAllocator.buffer(BaseAllocator.java:220) ~[drill-memory-base-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.memory.BaseAllocator.buffer(BaseAllocator.java:195) ~[drill-memory-base-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.vector.VarCharVector.reAlloc(VarCharVector.java:425) ~[vector-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.vector.VarCharVector.copyFromSafe(VarCharVector.java:278) ~[vector-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.vector.NullableVarCharVector.copyFromSafe(NullableVarCharVector.java:379) ~[vector-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.test.generated.PriorityQueueCopierGen140.doCopy(PriorityQueueCopierTemplate.java:22) ~[na:na]
> at org.apache.drill.exec.test.generated.PriorityQueueCopierGen140.next(PriorityQueueCopierTemplate.java:76) ~[na:na]
> at org.apache.drill.exec.physical.impl.xsort.managed.CopierHolder$BatchMerger.next(CopierHolder.java:234) ~[drill-java-exec-1.10.0.jar:1.10.0]
> at org.apache.drill.exec.physical.impl.xsort.managed.ExternalSortBatch.doMergeAndSpill(ExternalSortBatch.java:1408) [drill-java-exec-1.10.0.jar:1.10.0]
> ... 24 common frames omitted
> {quote}
> I'm in communication with Paul and will send him the full log file.
> Thanks,
> Nathan
--
This message was sent by Atlassian JIRA
(v6.3.15#6346)