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Posted to reviews@spark.apache.org by brkyvz <gi...@git.apache.org> on 2016/09/16 23:05:25 UTC

[GitHub] spark pull request #15122: [SPARK-17569] Make StructuredStreaming FileStream...

GitHub user brkyvz opened a pull request:

    https://github.com/apache/spark/pull/15122

    [SPARK-17569] Make StructuredStreaming FileStreamSource batch generation faster

    ## What changes were proposed in this pull request?
    
    While getting the batch for a `FileStreamSource` in StructuredStreaming, we know which files we must take specifically. We already have verified that they exist, and have committed them to a metadata log. When creating the FileSourceRelation however for an incremental execution, the code checks the existence of every single file once again!
    
    When you have 100,000s of files in a folder, creating the first batch takes 2 hours+ when working with S3! This PR disables that check
    
    
    ## How was this patch tested?
    
    Couldn't find any easy way to add a unit test for this. It's not easy to add a mock `FileSystem`, because the `FileSystem` instance is generated per file in the method itself. Only way to work around it maybe would be to expose a method for testing that generates the `FileSystem`?

You can merge this pull request into a Git repository by running:

    $ git pull https://github.com/brkyvz/spark SPARK-17569

Alternatively you can review and apply these changes as the patch at:

    https://github.com/apache/spark/pull/15122.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

    This closes #15122
    
----
commit 9b7e2de8d9b6a80095300b9e9f64bc620aa50023
Author: Burak Yavuz <br...@gmail.com>
Date:   2016-09-16T23:00:26Z

    make StructuredStreaming fileSource batch generation faster

----


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by brkyvz <gi...@git.apache.org>.
Github user brkyvz commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    @petermaxlee Thank you for the suggestions for testing. I will try out Option 1, since 2 is a bit much work for a minor PR as this.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by petermaxlee <gi...@git.apache.org>.
Github user petermaxlee commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Can you test this by deleting the file on purpose, and see what kind of exceptions are thrown?



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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by zsxwing <gi...@git.apache.org>.
Github user zsxwing commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    There are some conflicts with 2.0. Could you submit a patch for branch 2.0?


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65512 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65512/consoleFull)** for PR 15122 at commit [`9b7e2de`](https://github.com/apache/spark/commit/9b7e2de8d9b6a80095300b9e9f64bc620aa50023).


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by yhuai <gi...@git.apache.org>.
Github user yhuai commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    also cc @cloud-fan 


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Test PASSed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/65512/
    Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by brkyvz <gi...@git.apache.org>.
Github user brkyvz commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Added test using Option 2 in the end.


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[GitHub] spark pull request #15122: [SPARK-17569] Make StructuredStreaming FileStream...

Posted by zsxwing <gi...@git.apache.org>.
Github user zsxwing commented on a diff in the pull request:

    https://github.com/apache/spark/pull/15122#discussion_r79925163
  
    --- Diff: sql/core/src/test/scala/org/apache/spark/sql/execution/streaming/FileStreamSourceSuite.scala ---
    @@ -73,4 +83,44 @@ class FileStreamSourceSuite extends SparkFunSuite {
         assert(map.isNewFile(FileEntry("b", 10)))
       }
     
    +  testWithUninterruptibleThread("do not recheck that files exist during getBatch") {
    +    withTempDir { temp =>
    +      spark.conf.set(
    +        s"fs.$scheme.impl",
    +        classOf[ExistsThrowsExceptionFileSystem].getName)
    +      // add the metadata entries as a pre-req
    +      val dir = new File(temp, "dir") // use non-existent directory to test whether log make the dir
    +      val metadataLog = new HDFSMetadataLog[Array[FileEntry]](spark, dir.getAbsolutePath)
    --- End diff --
    
    Need to use `FileStreamSourceLog` here to add FileEntry.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by brkyvz <gi...@git.apache.org>.
Github user brkyvz commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    cc @zsxwing @yhuai 


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Merged build finished. Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65604 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65604/consoleFull)** for PR 15122 at commit [`0cf9c08`](https://github.com/apache/spark/commit/0cf9c0882ed99bc4b4cffafb730e28d7d0cdb69e).
     * This patch passes all tests.
     * This patch merges cleanly.
     * This patch adds the following public classes _(experimental)_:
      * `class ExistsThrowsExceptionFileSystem extends RawLocalFileSystem `


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by petermaxlee <gi...@git.apache.org>.
Github user petermaxlee commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    I looked into this. I think there are two ways that you can intercept any calls to HDFS.
    
    The first way is slightly hacky but pretty simple. FileSystem.addFileSystemForTesting is a package private method that can be used to inject a mock file system. You can create an implementation of FilterFileSystem and pass it in as "file" schema. Then all accesses to local file system will go through your implementation. Of course, you can also use a mocking library to do that, but that is not as clean since FilterFileSystem is a public interface.
    
    The second way is more robust and does not depend on any private APIs. Create an implementation of FilterFileSystem by pointing to LocalFileSystem, e.g. call it MockFileSystem. MockFileSystem.getScheme should return "mockfs://". You can then use this as the path when passing to structured streaming. This is probably a more robust, generic solution.
    



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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by yhuai <gi...@git.apache.org>.
Github user yhuai commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    ok, got it. Thanks!


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[GitHub] spark pull request #15122: [SPARK-17569] Make StructuredStreaming FileStream...

Posted by asfgit <gi...@git.apache.org>.
Github user asfgit closed the pull request at:

    https://github.com/apache/spark/pull/15122


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65604 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65604/consoleFull)** for PR 15122 at commit [`0cf9c08`](https://github.com/apache/spark/commit/0cf9c0882ed99bc4b4cffafb730e28d7d0cdb69e).


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65605 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65605/consoleFull)** for PR 15122 at commit [`6221b37`](https://github.com/apache/spark/commit/6221b37ebc648d91e934f0425a6f60885215d78a).


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by brkyvz <gi...@git.apache.org>.
Github user brkyvz commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    @yhuai The suggestions are for purely testing purposes, to make sure that StructuredStreaming doesn't check for file existence twice.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by yhuai <gi...@git.apache.org>.
Github user yhuai commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    @petermaxlee I believe you will get a runtime exception saying that the file does not exist. 
    
    Also, regarding your options 2, are you suggesting that users of structured streaming to use such a mock fs? Or you are suggesting that structured streaming to use such a fs. Also, why LocalFS is related to this case? 


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Test PASSed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/65736/
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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #3285 has finished](https://amplab.cs.berkeley.edu/jenkins/job/NewSparkPullRequestBuilder/3285/consoleFull)** for PR 15122 at commit [`6221b37`](https://github.com/apache/spark/commit/6221b37ebc648d91e934f0425a6f60885215d78a).
     * This patch **fails Spark unit tests**.
     * This patch merges cleanly.
     * This patch adds the following public classes _(experimental)_:
      * `class FileStreamSourceSuite extends SparkFunSuite with SharedSQLContext `


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65736 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65736/consoleFull)** for PR 15122 at commit [`666c2c5`](https://github.com/apache/spark/commit/666c2c50114349eeae5bf0d532e03a13de09c434).
     * This patch passes all tests.
     * This patch merges cleanly.
     * This patch adds no public classes.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65512 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65512/consoleFull)** for PR 15122 at commit [`9b7e2de`](https://github.com/apache/spark/commit/9b7e2de8d9b6a80095300b9e9f64bc620aa50023).
     * This patch passes all tests.
     * This patch merges cleanly.
     * This patch adds no public classes.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65736 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65736/consoleFull)** for PR 15122 at commit [`666c2c5`](https://github.com/apache/spark/commit/666c2c50114349eeae5bf0d532e03a13de09c434).


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Test PASSed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/65605/
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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Merged build finished. Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #65605 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/65605/consoleFull)** for PR 15122 at commit [`6221b37`](https://github.com/apache/spark/commit/6221b37ebc648d91e934f0425a6f60885215d78a).
     * This patch passes all tests.
     * This patch merges cleanly.
     * This patch adds the following public classes _(experimental)_:
      * `class FileStreamSourceSuite extends SparkFunSuite with SharedSQLContext `


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by zsxwing <gi...@git.apache.org>.
Github user zsxwing commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    LGTM. Let's run the test again since there are several PRs got merged in the past two days.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Merged build finished. Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    **[Test build #3285 has started](https://amplab.cs.berkeley.edu/jenkins/job/NewSparkPullRequestBuilder/3285/consoleFull)** for PR 15122 at commit [`6221b37`](https://github.com/apache/spark/commit/6221b37ebc648d91e934f0425a6f60885215d78a).


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Merged build finished. Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    Test PASSed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/65604/
    Test PASSed.


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by brkyvz <gi...@git.apache.org>.
Github user brkyvz commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    @zsxwing Thanks for the comment. Updated!


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[GitHub] spark issue #15122: [SPARK-17569] Make StructuredStreaming FileStreamSource ...

Posted by zsxwing <gi...@git.apache.org>.
Github user zsxwing commented on the issue:

    https://github.com/apache/spark/pull/15122
  
    LGTM. Merging to master and 2.0. Thanks!


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