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Posted to commits@airavata.apache.org by sm...@apache.org on 2013/06/29 21:51:08 UTC

svn commit: r1497993 [1/2] - in /airavata/trunk: ./ modules/airavata-client/src/main/java/org/apache/airavata/client/impl/ modules/commons/gfac-schema/src/main/resources/schemas/ modules/credential-store/src/main/java/org/apache/airavata/credential/sto...

Author: smarru
Date: Sat Jun 29 18:20:44 2013
New Revision: 1497993

URL: http://svn.apache.org/r1497993
Log:
Adding the missing license headers

Modified:
    airavata/trunk/modules/airavata-client/src/main/java/org/apache/airavata/client/impl/CredentialStoreSecuritySettingsImpl.java
    airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-hpcpa.xsd
    airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-posix.xsd
    airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-spmd.xsd
    airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl.xsd
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/AuditInfo.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/Credential.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateAuditInfo.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateCredential.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/password/PasswordCredential.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialBootstrapper.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreOA4MPServer.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreStartServlet.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReader.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReaderFactory.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialStoreException.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialWriter.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CredentialReaderImpl.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAO.java
    airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/ParentDAO.java
    airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAOTest.java
    airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAOTest.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExecutionErrorResource.java
    airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExecutionErrorsList.java
    airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExperimentErrorsList.java
    airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/GFacErrorsList.java
    airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/NodeErrorsList.java
    airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/WorkflowErrorsList.java
    airavata/trunk/modules/rest/webapp/src/main/resources/credential-store/client.xml
    airavata/trunk/pom.xml

Modified: airavata/trunk/modules/airavata-client/src/main/java/org/apache/airavata/client/impl/CredentialStoreSecuritySettingsImpl.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/airavata-client/src/main/java/org/apache/airavata/client/impl/CredentialStoreSecuritySettingsImpl.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/airavata-client/src/main/java/org/apache/airavata/client/impl/CredentialStoreSecuritySettingsImpl.java (original)
+++ airavata/trunk/modules/airavata-client/src/main/java/org/apache/airavata/client/impl/CredentialStoreSecuritySettingsImpl.java Sat Jun 29 18:20:44 2013
@@ -24,12 +24,6 @@ package org.apache.airavata.client.impl;
 import org.apache.airavata.client.api.CredentialStoreSecuritySettings;
 
 /**
- * User: AmilaJ (amilaj@apache.org)
- * Date: 5/7/13
- * Time: 2:44 PM
- */
-
-/**
  * Implementation of credential store security settings class.
  */
 public class CredentialStoreSecuritySettingsImpl implements CredentialStoreSecuritySettings {
@@ -47,7 +41,6 @@ public class CredentialStoreSecuritySett
         this.tokenId = tokenId;
     }
 
-
     public String getTokenId() {
         return tokenId;
     }

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-hpcpa.xsd
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-hpcpa.xsd?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
Binary files - no diff available.

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-posix.xsd
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-posix.xsd?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
Binary files - no diff available.

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-spmd.xsd
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl-spmd.xsd?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
Binary files - no diff available.

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl.xsd
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/resources/schemas/jsdl.xsd?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
Binary files - no diff available.

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/AuditInfo.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/AuditInfo.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/AuditInfo.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/AuditInfo.java Sat Jun 29 18:20:44 2013
@@ -1,4 +1,3 @@
-package org.apache.airavata.credential.store.credential;
 /*
  *
  * Licensed to the Apache Software Foundation (ASF) under one
@@ -20,39 +19,35 @@ package org.apache.airavata.credential.s
  *
  */
 
+package org.apache.airavata.credential.store.credential;
 
 import java.io.Serializable;
 import java.util.Date;
 
 /**
- * User: AmilaJ (amilaj@apache.org)
- * Date: 3/22/13
- * Time: 11:55 AM
- */
-
-/**
  * Any audit information related to a credential.
  */
 public interface AuditInfo extends Serializable {
 
     /**
      * Gets the community user associated with the credential.
+     * 
      * @return The community user associated with the credential.
      */
     public CommunityUser getCommunityUser();
 
     /**
      * The portal user associated with the credential.
+     * 
      * @return The portal user name.
      */
     public String getPortalUserId();
 
     /**
      * Get the time which credentials are persisted.
+     * 
      * @return Time credentials are persisted.
      */
     public Date getTimePersisted();
 
-
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/Credential.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/Credential.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/Credential.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/Credential.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.credential;
 
 import java.io.Serializable;
@@ -5,8 +26,8 @@ import java.sql.Timestamp;
 import java.util.Date;
 
 /**
- * This class represents the actual credential. The credential can be a certificate, user name password
- * or a SSH key. As per now we only have certificate implementation.
+ * This class represents the actual credential. The credential can be a certificate, user name password or a SSH key. As
+ * per now we only have certificate implementation.
  */
 public abstract class Credential implements Serializable {
 
@@ -38,5 +59,4 @@ public abstract class Credential impleme
         return persistedTime;
     }
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateAuditInfo.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateAuditInfo.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateAuditInfo.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateAuditInfo.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+*/
+
 package org.apache.airavata.credential.store.credential.impl.certificate;
 
 import org.apache.airavata.credential.store.credential.AuditInfo;

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateCredential.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateCredential.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateCredential.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/certificate/CertificateCredential.java Sat Jun 29 18:20:44 2013
@@ -1,7 +1,29 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.credential.impl.certificate;
 
 import org.apache.airavata.credential.store.credential.CommunityUser;
-import org.apache.airavata.credential.store.credential.Credential;import java.security.PrivateKey;
+import org.apache.airavata.credential.store.credential.Credential;
+import java.security.PrivateKey;
 import java.security.cert.X509Certificate;
 
 /**
@@ -45,7 +67,6 @@ public class CertificateCredential exten
         this.notAfter = notAfter;
     }
 
-
     public PrivateKey getPrivateKey() {
         return privateKey;
     }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/password/PasswordCredential.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/password/PasswordCredential.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/password/PasswordCredential.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/credential/impl/password/PasswordCredential.java Sat Jun 29 18:20:44 2013
@@ -26,12 +26,6 @@ import org.apache.airavata.credential.st
 import java.util.Date;
 
 /**
- * User: AmilaJ (amilaj@apache.org)
- * Date: 3/22/13
- * Time: 11:41 AM
- */
-
-/**
  * User name password credentials.
  */
 public class PasswordCredential extends Credential {
@@ -55,5 +49,4 @@ public class PasswordCredential extends 
         this.password = password;
     }
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialBootstrapper.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialBootstrapper.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialBootstrapper.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialBootstrapper.java Sat Jun 29 18:20:44 2013
@@ -36,9 +36,7 @@ public class CredentialBootstrapper exte
 
     protected static Logger log = LoggerFactory.getLogger(CredentialBootstrapper.class);
 
-
-    public ConfigurationLoader getConfigurationLoader(ServletContext servletContext)
-            throws Exception {
+    public ConfigurationLoader getConfigurationLoader(ServletContext servletContext) throws Exception {
 
         File currentDirectory = new File(".");
 
@@ -46,8 +44,6 @@ public class CredentialBootstrapper exte
 
         return super.getConfigurationLoader(servletContext);
 
-
     }
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreCallbackServlet.java Sat Jun 29 18:20:44 2013
@@ -45,9 +45,8 @@ import java.util.Map;
 import static edu.uiuc.ncsa.myproxy.oa4mp.client.ClientEnvironment.CALLBACK_URI_KEY;
 
 /**
- * Callback from the portal will come here. In this class we will store incomming
- * certificate to the database.
- * Partly taken from OA4MP code base.
+ * Callback from the portal will come here. In this class we will store incomming certificate to the database. Partly
+ * taken from OA4MP code base.
  */
 public class CredentialStoreCallbackServlet extends ClientServlet {
 
@@ -100,8 +99,8 @@ public class CredentialStoreCallbackServ
         String contactEmail = request.getParameter(PORTAL_USER_EMAIL_QUERY_PARAMETER);
         String portalTokenId = request.getParameter(PORTAL_TOKEN_ID_ASSIGNED);
 
-        //TODO remove hard coded values, once passing query parameters is
-        //fixed in OA4MP client api
+        // TODO remove hard coded values, once passing query parameters is
+        // fixed in OA4MP client api
         long duration = 800;
 
         if (durationParameter != null) {
@@ -125,8 +124,10 @@ public class CredentialStoreCallbackServ
         String token = request.getParameter(TOKEN_KEY);
         String verifier = request.getParameter(VERIFIER_KEY);
         if (token == null || verifier == null) {
-            warn("2.a. The token is " + (token == null ? "null" : token) + " and the verifier is " + (verifier == null ? "null" : verifier));
-            GeneralException ge = new GeneralException("Error: This servlet requires parameters for the token and verifier. It cannot be called directly.");
+            warn("2.a. The token is " + (token == null ? "null" : token) + " and the verifier is "
+                    + (verifier == null ? "null" : verifier));
+            GeneralException ge = new GeneralException(
+                    "Error: This servlet requires parameters for the token and verifier. It cannot be called directly.");
             request.setAttribute("exception", ge);
             JSPUtil.fwd(request, response, ERROR_PAGE);
             return;
@@ -136,13 +137,12 @@ public class CredentialStoreCallbackServ
         AssetResponse assetResponse = null;
         OA4MPResponse oa4MPResponse = null;
 
-        Map<String, String> parameters = createQueryParameters(gatewayName, portalUserName,
-                                                     contactEmail, portalTokenId);
+        Map<String, String> parameters = createQueryParameters(gatewayName, portalUserName, contactEmail, portalTokenId);
 
         try {
             info("Requesting private key ...");
             oa4MPResponse = getOA4MPService().requestCert(parameters);
-            //oa4MPResponse = getOA4MPService().requestCert();
+            // oa4MPResponse = getOA4MPService().requestCert();
 
             info("2.a. Getting the cert(s) from the service");
             assetResponse = getOA4MPService().getCert(token, verifier);
@@ -164,8 +164,8 @@ public class CredentialStoreCallbackServ
         certificateCredential.setNotAfter(Utility.convertDateToString(cert.getNotAfter()));
         certificateCredential.setCertificate(cert);
         certificateCredential.setPrivateKey(oa4MPResponse.getPrivateKey());
-        certificateCredential.setCommunityUser(new CommunityUser(gatewayName, assetResponse.getUsername(),
-                contactEmail));
+        certificateCredential
+                .setCommunityUser(new CommunityUser(gatewayName, assetResponse.getUsername(), contactEmail));
         certificateCredential.setPortalUserName(portalUserName);
         certificateCredential.setLifeTime(duration);
         certificateCredential.setToken(portalTokenId);
@@ -188,10 +188,8 @@ public class CredentialStoreCallbackServ
 
     }
 
-    private Map<String, String> createQueryParameters (String gatewayName,
-                                                            String portalUserName,
-                                                            String portalEmail,
-                                                            String tokenId) {
+    private Map<String, String> createQueryParameters(String gatewayName, String portalUserName, String portalEmail,
+            String tokenId) {
 
         String callbackUriKey = getEnvironment().getConstants().get(CALLBACK_URI_KEY);
         ClientEnvironment clientEnvironment = (ClientEnvironment) getEnvironment();
@@ -200,11 +198,9 @@ public class CredentialStoreCallbackServ
 
         StringBuilder stringBuilder = new StringBuilder(callbackUri);
 
-        stringBuilder.append("?").append(GATEWAY_NAME_QUERY_PARAMETER).append("=").append(gatewayName)
-                .append("&").append(PORTAL_USER_QUERY_PARAMETER).append("=").append(portalUserName)
-                .append("&")
-                .append(PORTAL_USER_EMAIL_QUERY_PARAMETER).append("=").append(portalEmail)
-                .append("&")
+        stringBuilder.append("?").append(GATEWAY_NAME_QUERY_PARAMETER).append("=").append(gatewayName).append("&")
+                .append(PORTAL_USER_QUERY_PARAMETER).append("=").append(portalUserName).append("&")
+                .append(PORTAL_USER_EMAIL_QUERY_PARAMETER).append("=").append(portalEmail).append("&")
                 .append(PORTAL_TOKEN_ID_ASSIGNED).append("=").append(tokenId);
 
         info("Callback URI is set to - " + stringBuilder.toString());
@@ -216,4 +212,3 @@ public class CredentialStoreCallbackServ
 
     }
 }
-

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreOA4MPServer.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreOA4MPServer.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreOA4MPServer.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreOA4MPServer.java Sat Jun 29 18:20:44 2013
@@ -39,8 +39,7 @@ import static edu.uiuc.ncsa.security.uti
 import static edu.uiuc.ncsa.security.util.pkcs.KeyUtil.generateKeyPair;
 
 /**
- * Credential store specific OA4MPService.
- * Only change is add support to include get parameters.
+ * Credential store specific OA4MPService. Only change is add support to include get parameters.
  */
 public class CredentialStoreOA4MPServer extends OA4MPService {
     public CredentialStoreOA4MPServer(ClientEnvironment environment) {
@@ -58,11 +57,12 @@ public class CredentialStoreOA4MPServer 
             PKCS10CertificationRequest certReq = createCertRequest(keyPair);
             OA4MPResponse mpdsResponse = new OA4MPResponse();
             mpdsResponse.setPrivateKey(keyPair.getPrivate());
-            additionalParameters.put(ClientEnvironment.CERT_REQUEST_KEY, Base64.encodeBase64String(certReq.getDEREncoded()));
+            additionalParameters.put(ClientEnvironment.CERT_REQUEST_KEY,
+                    Base64.encodeBase64String(certReq.getDEREncoded()));
 
             if (additionalParameters.get(getEnvironment().getConstants().get(CALLBACK_URI_KEY)) == null) {
-                additionalParameters.put(getEnvironment().getConstants().get(CALLBACK_URI_KEY), getEnvironment().
-                        getCallback().toString());
+                additionalParameters.put(getEnvironment().getConstants().get(CALLBACK_URI_KEY), getEnvironment()
+                        .getCallback().toString());
             }
 
             DelegationRequest daReq = new DelegationRequest();

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreStartServlet.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreStartServlet.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreStartServlet.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/servlet/CredentialStoreStartServlet.java Sat Jun 29 18:20:44 2013
@@ -76,8 +76,7 @@ public class CredentialStoreStartServlet
     }
 
     @Override
-    protected void doIt(HttpServletRequest request, HttpServletResponse response)
-            throws Throwable {
+    protected void doIt(HttpServletRequest request, HttpServletResponse response) throws Throwable {
 
         String gatewayName = request.getParameter("gatewayName");
         String portalUserName = request.getParameter("portalUserName");
@@ -85,21 +84,20 @@ public class CredentialStoreStartServlet
         String associatedToken = request.getParameter("associatedToken");
 
         if (gatewayName == null) {
-            JSPUtil.handleException(new RuntimeException("Please specify a gateway name."), request,
-                    response, "/credential-store/error.jsp");
+            JSPUtil.handleException(new RuntimeException("Please specify a gateway name."), request, response,
+                    "/credential-store/error.jsp");
             return;
         }
 
         if (portalUserName == null) {
-            JSPUtil.handleException(new RuntimeException("Please specify a portal user name."), request,
-                    response, "/credential-store/error.jsp");
+            JSPUtil.handleException(new RuntimeException("Please specify a portal user name."), request, response,
+                    "/credential-store/error.jsp");
             return;
         }
 
         if (contactEmail == null) {
-            JSPUtil.handleException(new RuntimeException("Please specify a contact email address for community" +
-                    " user account."), request,
-                    response, "/credential-store/error.jsp");
+            JSPUtil.handleException(new RuntimeException("Please specify a contact email address for community"
+                    + " user account."), request, response, "/credential-store/error.jsp");
             return;
         }
 
@@ -120,7 +118,6 @@ public class CredentialStoreStartServlet
 
         additionalParameters.put(getEnvironment().getConstants().get(CALLBACK_URI_KEY), modifiedCallbackUri);
 
-
         // Drumroll please: here is the work for this call.
         try {
             gtwResp = getOA4MPService().requestCert(additionalParameters);

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReader.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReader.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReader.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReader.java Sat Jun 29 18:20:44 2013
@@ -1,57 +1,92 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store;
 
 import org.apache.airavata.credential.store.credential.AuditInfo;
 import org.apache.airavata.credential.store.credential.Credential;
 
 /**
- * This interface provides an API for Credential Store.
- * Provides methods to manipulate credential store data.
+ * This interface provides an API for Credential Store. Provides methods to manipulate credential store data.
  */
 public interface CredentialReader {
 
-
     /**
      * Retrieves the credential from the credential store.
-     * @param gatewayId The gateway id
-     * @param tokenId The token id associated with the credential
+     * 
+     * @param gatewayId
+     *            The gateway id
+     * @param tokenId
+     *            The token id associated with the credential
      * @return The Credential object associated with the token.
-     * @throws CredentialStoreException If an error occurred while retrieving a credential.
+     * @throws CredentialStoreException
+     *             If an error occurred while retrieving a credential.
      */
     Credential getCredential(String gatewayId, String tokenId) throws CredentialStoreException;
 
     /**
-     * Gets the admin portal user name who  retrieved given community user for
-     * given portal user name.
-     * @param gatewayName The gateway name
-     * @param tokenId The issued token id.
+     * Gets the admin portal user name who retrieved given community user for given portal user name.
+     * 
+     * @param gatewayName
+     *            The gateway name
+     * @param tokenId
+     *            The issued token id.
      * @return The portal user name who requested given community user credentials.
      */
     String getPortalUser(String gatewayName, String tokenId) throws CredentialStoreException;
 
     /**
-     * Gets audit information related to given gateway name and community
-     * user name.
-     * @param gatewayName The gateway name.
-     * @param tokenId The community user name.
+     * Gets audit information related to given gateway name and community user name.
+     * 
+     * @param gatewayName
+     *            The gateway name.
+     * @param tokenId
+     *            The community user name.
      * @return CertificateAuditInfo object.
      */
     AuditInfo getAuditInfo(String gatewayName, String tokenId) throws CredentialStoreException;
 
     /**
      * Updates the community user contact email address.
-     * @param gatewayName The gateway name.
-     * @param communityUser The community user name.
-     * @param email The new email address.
+     * 
+     * @param gatewayName
+     *            The gateway name.
+     * @param communityUser
+     *            The community user name.
+     * @param email
+     *            The new email address.
      */
-    void updateCommunityUserEmail(String gatewayName, String communityUser, String email) throws CredentialStoreException;
+    void updateCommunityUserEmail(String gatewayName, String communityUser, String email)
+            throws CredentialStoreException;
 
     /**
      * Will remove credentials for the given gateway id and community user.
-     * @param gatewayName The gateway Id
-     * @param tokenId The issued token id.
-     * @throws CredentialStoreException If an error occurred while retrieving data.
+     * 
+     * @param gatewayName
+     *            The gateway Id
+     * @param tokenId
+     *            The issued token id.
+     * @throws CredentialStoreException
+     *             If an error occurred while retrieving data.
      */
     void removeCredentials(String gatewayName, String tokenId) throws CredentialStoreException;
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReaderFactory.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReaderFactory.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReaderFactory.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialReaderFactory.java Sat Jun 29 18:20:44 2013
@@ -21,12 +21,6 @@
 
 package org.apache.airavata.credential.store.store;
 
-/**
- * User: AmilaJ (amilaj@apache.org)
- * Date: 5/8/13
- * Time: 3:44 PM
- */
-
 import org.apache.airavata.common.utils.DBUtil;
 import org.apache.airavata.credential.store.store.impl.CredentialReaderImpl;
 

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialStoreException.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialStoreException.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialStoreException.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialStoreException.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store;
 
 /**

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialWriter.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialWriter.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialWriter.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/CredentialWriter.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store;
 
 import org.apache.airavata.credential.store.credential.Credential;
@@ -9,9 +30,10 @@ public interface CredentialWriter {
 
     /**
      * Writes given credentials to a persistent storage.
-     * @param credential The credentials implementation.
+     * 
+     * @param credential
+     *            The credentials implementation.
      */
     void writeCredentials(Credential credential) throws CredentialStoreException;
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CertificateCredentialWriter.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl;
 
 import org.apache.airavata.common.utils.DBUtil;
@@ -32,7 +53,7 @@ public class CertificateCredentialWriter
 
     public void writeCredentials(Credential credential) throws CredentialStoreException {
 
-        CertificateCredential certificateCredential = (CertificateCredential)credential;
+        CertificateCredential certificateCredential = (CertificateCredential) credential;
 
         Connection connection = null;
 
@@ -45,7 +66,8 @@ public class CertificateCredentialWriter
             credentialsDAO.deleteCredentials(certificateCredential.getCommunityUser().getGatewayName(),
                     certificateCredential.getToken(), connection);
             // Add the new certificate
-            credentialsDAO.addCredentials(certificateCredential.getCommunityUser().getGatewayName(), credential, connection);
+            credentialsDAO.addCredentials(certificateCredential.getCommunityUser().getGatewayName(), credential,
+                    connection);
 
         } catch (SQLException e) {
             throw new CredentialStoreException("Unable to retrieve database connection.", e);
@@ -55,7 +77,8 @@ public class CertificateCredentialWriter
 
     }
 
-    public void writeCommunityUser(CommunityUser communityUser, String token, Connection connection) throws CredentialStoreException {
+    public void writeCommunityUser(CommunityUser communityUser, String token, Connection connection)
+            throws CredentialStoreException {
 
         // First delete existing community user
         communityUserDAO.deleteCommunityUserByToken(communityUser, token, connection);
@@ -65,18 +88,14 @@ public class CertificateCredentialWriter
 
     }
 
-    /* TODO Remove later - If we dont need to expose this in the interface
-    public void writeCommunityUser(CommunityUser communityUser, String token) throws CredentialStoreException {
-
-        Connection connection = null;
-        try {
-            connection = dbUtil.getConnection();
-            writeCommunityUser(communityUser, token, connection);
-
-        } catch (SQLException e) {
-            throw new CredentialStoreException("Unable to retrieve database connection.", e);
-        } finally {
-            DBUtil.cleanup(connection);
-        }
-    }*/
+    /*
+     * TODO Remove later - If we dont need to expose this in the interface public void writeCommunityUser(CommunityUser
+     * communityUser, String token) throws CredentialStoreException {
+     * 
+     * Connection connection = null; try { connection = dbUtil.getConnection(); writeCommunityUser(communityUser, token,
+     * connection);
+     * 
+     * } catch (SQLException e) { throw new CredentialStoreException("Unable to retrieve database connection.", e); }
+     * finally { DBUtil.cleanup(connection); } }
+     */
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CredentialReaderImpl.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CredentialReaderImpl.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CredentialReaderImpl.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/CredentialReaderImpl.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl;
 
 import org.apache.airavata.common.utils.DBUtil;
@@ -13,7 +34,6 @@ import java.io.Serializable;
 import java.sql.Connection;
 import java.sql.SQLException;
 
-
 /**
  * Credential store API implementation.
  */
@@ -38,7 +58,6 @@ public class CredentialReaderImpl implem
         }
     }
 
-
     @Override
     public Credential getCredential(String gatewayId, String tokenId) throws CredentialStoreException {
 
@@ -58,8 +77,7 @@ public class CredentialReaderImpl implem
         Credential credential;
 
         try {
-             credential
-                    = this.credentialsDAO.getCredential(gatewayName, tokenId, connection);
+            credential = this.credentialsDAO.getCredential(gatewayName, tokenId, connection);
 
         } finally {
             DBUtil.cleanup(connection);
@@ -68,8 +86,7 @@ public class CredentialReaderImpl implem
         return credential.getPortalUserName();
     }
 
-    public CertificateAuditInfo getAuditInfo(String gatewayName, String tokenId)
-            throws CredentialStoreException {
+    public CertificateAuditInfo getAuditInfo(String gatewayName, String tokenId) throws CredentialStoreException {
 
         Connection connection = getConnection();
 
@@ -77,8 +94,8 @@ public class CredentialReaderImpl implem
 
         try {
 
-            CertificateCredential certificateCredential
-                    = (CertificateCredential)this.credentialsDAO.getCredential(gatewayName, tokenId, connection);
+            CertificateCredential certificateCredential = (CertificateCredential) this.credentialsDAO.getCredential(
+                    gatewayName, tokenId, connection);
 
             certificateAuditInfo = new CertificateAuditInfo();
 
@@ -100,7 +117,7 @@ public class CredentialReaderImpl implem
 
     public void updateCommunityUserEmail(String gatewayName, String communityUser, String email)
             throws CredentialStoreException {
-        //TODO
+        // TODO
     }
 
     public void removeCredentials(String gatewayName, String tokenId) throws CredentialStoreException {
@@ -115,6 +132,4 @@ public class CredentialReaderImpl implem
 
     }
 
-
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAO.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl.db;
 
 import org.apache.airavata.common.utils.DBUtil;
@@ -20,7 +41,8 @@ public class CommunityUserDAO extends Pa
         super();
     }
 
-    public void addCommunityUser(CommunityUser user, String token, Connection connection) throws CredentialStoreException {
+    public void addCommunityUser(CommunityUser user, String token, Connection connection)
+            throws CredentialStoreException {
 
         String sql = "insert into community_user values (?, ?, ?, ?)";
 
@@ -54,7 +76,6 @@ public class CommunityUserDAO extends Pa
         }
     }
 
-
     public void deleteCommunityUser(CommunityUser user, Connection connection) throws CredentialStoreException {
 
         String sql = "delete from community_user where gateway_name=? and community_user_name=?";
@@ -84,7 +105,8 @@ public class CommunityUserDAO extends Pa
         }
     }
 
-    public void deleteCommunityUserByToken(CommunityUser user, String token, Connection connection) throws CredentialStoreException {
+    public void deleteCommunityUserByToken(CommunityUser user, String token, Connection connection)
+            throws CredentialStoreException {
 
         String sql = "delete from community_user where gateway_name=? and community_user_name=? and token_id=?";
 
@@ -116,11 +138,11 @@ public class CommunityUserDAO extends Pa
 
     public void updateCommunityUser(CommunityUser user) throws CredentialStoreException {
 
-        //TODO
+        // TODO
     }
 
     public CommunityUser getCommunityUser(String gatewayName, String communityUserName, Connection connection)
-            throws CredentialStoreException{
+            throws CredentialStoreException {
 
         String sql = "select * from community_user where gateway_name=? and community_user_name=?";
 
@@ -135,7 +157,7 @@ public class CommunityUserDAO extends Pa
             ResultSet resultSet = preparedStatement.executeQuery();
 
             if (resultSet.next()) {
-                String email = resultSet.getString("COMMUNITY_USER_EMAIL");  //TODO fix typo
+                String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo
 
                 return new CommunityUser(gatewayName, communityUserName, email);
 
@@ -157,7 +179,7 @@ public class CommunityUserDAO extends Pa
     }
 
     public CommunityUser getCommunityUserByToken(String gatewayName, String tokenId, Connection connection)
-            throws CredentialStoreException{
+            throws CredentialStoreException {
 
         String sql = "select * from community_user where gateway_name=? and token_id=?";
 
@@ -173,7 +195,7 @@ public class CommunityUserDAO extends Pa
 
             if (resultSet.next()) {
                 String communityUserName = resultSet.getString("community_user_name");
-                String email = resultSet.getString("COMMUNITY_USER_EMAIL");  //TODO fix typo
+                String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo
 
                 return new CommunityUser(gatewayName, communityUserName, email);
 
@@ -194,9 +216,8 @@ public class CommunityUserDAO extends Pa
         return null;
     }
 
-
     public List<CommunityUser> getCommunityUsers(String gatewayName, Connection connection)
-            throws CredentialStoreException{
+            throws CredentialStoreException {
 
         List<CommunityUser> userList = new ArrayList<CommunityUser>();
 
@@ -213,7 +234,7 @@ public class CommunityUserDAO extends Pa
 
             while (resultSet.next()) {
                 String userName = resultSet.getString("COMMUNITY_USER_NAME");
-                String email = resultSet.getString("COMMUNITY_USER_EMAIL");  //TODO fix typo
+                String email = resultSet.getString("COMMUNITY_USER_EMAIL"); // TODO fix typo
 
                 userList.add(new CommunityUser(gatewayName, userName, email));
 
@@ -233,5 +254,4 @@ public class CommunityUserDAO extends Pa
         return userList;
     }
 
-
 }

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAO.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAO.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAO.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAO.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl.db;
 
 import org.apache.airavata.common.utils.DBUtil;
@@ -19,19 +40,15 @@ public class CredentialsDAO extends Pare
     }
 
     /**
-     * String createTable = "CREATE TABLE CREDENTIALS\n" +
-     "(\n" +
-     "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
-     "        TOKEN_ID VARCHAR(256) NOT NULL,\n" +       // Actual token used to identify the credential
-     "        CREDENTIAL BLOB NOT NULL,\n" +
-     "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
-     "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" +
-     "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" +
-     ")";
+     * String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n" + "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TOKEN_ID VARCHAR(256) NOT NULL,\n" + // Actual token used to identify the credential
+     * "        CREDENTIAL BLOB NOT NULL,\n" + "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" + "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n"
+     * + ")";
      */
 
-    public void addCredentials(String gatewayId, Credential credential,
-                               Connection connection) throws CredentialStoreException {
+    public void addCredentials(String gatewayId, Credential credential, Connection connection)
+            throws CredentialStoreException {
 
         String sql = "insert into credentials values (?, ?, ?, ?, ?)";
 
@@ -43,13 +60,12 @@ public class CredentialsDAO extends Pare
             preparedStatement.setString(1, gatewayId);
             preparedStatement.setString(2, credential.getToken());
 
-            InputStream isCert = new ByteArrayInputStream(
-                    convertObjectToByteArray(credential));
+            InputStream isCert = new ByteArrayInputStream(convertObjectToByteArray(credential));
             preparedStatement.setBinaryStream(3, isCert);
 
             preparedStatement.setString(4, credential.getPortalUserName());
 
-            java.util.Date date= new java.util.Date();
+            java.util.Date date = new java.util.Date();
             Timestamp timestamp = new Timestamp(date.getTime());
 
             preparedStatement.setTimestamp(5, timestamp);
@@ -65,7 +81,8 @@ public class CredentialsDAO extends Pare
 
             throw new CredentialStoreException(stringBuilder.toString(), e);
         } catch (UnsupportedEncodingException e) {
-            StringBuilder stringBuilder = new StringBuilder("Error persisting community credentials. Unsupported encoding.");
+            StringBuilder stringBuilder = new StringBuilder(
+                    "Error persisting community credentials. Unsupported encoding.");
             stringBuilder.append(" gateway - ").append(gatewayId);
             stringBuilder.append(" token id - ").append(credential.getToken());
 
@@ -73,8 +90,8 @@ public class CredentialsDAO extends Pare
 
             throw new CredentialStoreException(stringBuilder.toString(), e);
         } catch (IOException e) {
-            StringBuilder stringBuilder = new StringBuilder("Error persisting community credentials. Error serializing " +
-                    "credentials.");
+            StringBuilder stringBuilder = new StringBuilder(
+                    "Error persisting community credentials. Error serializing " + "credentials.");
             stringBuilder.append(" gateway - ").append(gatewayId);
             stringBuilder.append(" community user name - ").append(credential.getToken());
 
@@ -87,7 +104,6 @@ public class CredentialsDAO extends Pare
         }
     }
 
-
     public void deleteCredentials(String gatewayName, String tokenId, Connection connection)
             throws CredentialStoreException {
 
@@ -117,18 +133,14 @@ public class CredentialsDAO extends Pare
     }
 
     /**
-     * String createTable = "CREATE TABLE CREDENTIALS\n" +
-     "(\n" +
-     "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
-     "        TOKEN_ID VARCHAR(256) NOT NULL,\n" +       // Actual token used to identify the credential
-     "        CREDENTIAL BLOB NOT NULL,\n" +
-     "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
-     "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" +
-     "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" +
-     ")";
+     * String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n" + "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TOKEN_ID VARCHAR(256) NOT NULL,\n" + // Actual token used to identify the credential
+     * "        CREDENTIAL BLOB NOT NULL,\n" + "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" + "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n"
+     * + ")";
      */
-    public void updateCredentials(String gatewayId, Credential credential,
-                                  Connection connection) throws CredentialStoreException {
+    public void updateCredentials(String gatewayId, Credential credential, Connection connection)
+            throws CredentialStoreException {
 
         String sql = "update CREDENTIALS set CREDENTIAL = ?, PORTAL_USER_ID = ?, TIME_PERSISTED = ? where GATEWAY_ID = ? and TOKEN_ID = ?";
 
@@ -137,8 +149,7 @@ public class CredentialsDAO extends Pare
         try {
             preparedStatement = connection.prepareStatement(sql);
 
-            InputStream isCert = new ByteArrayInputStream(
-                    convertObjectToByteArray(credential));
+            InputStream isCert = new ByteArrayInputStream(convertObjectToByteArray(credential));
             preparedStatement.setBinaryStream(1, isCert);
 
             preparedStatement.setString(2, credential.getPortalUserName());
@@ -147,7 +158,6 @@ public class CredentialsDAO extends Pare
             preparedStatement.setString(4, gatewayId);
             preparedStatement.setString(5, credential.getToken());
 
-
             preparedStatement.executeUpdate();
 
         } catch (SQLException e) {
@@ -182,15 +192,11 @@ public class CredentialsDAO extends Pare
     }
 
     /**
-     * String createTable = "CREATE TABLE CREDENTIALS\n" +
-     "(\n" +
-     "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
-     "        TOKEN_ID VARCHAR(256) NOT NULL,\n" +       // Actual token used to identify the credential
-     "        CREDENTIAL BLOB NOT NULL,\n" +
-     "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
-     "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" +
-     "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" +
-     ")";
+     * String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n" + "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TOKEN_ID VARCHAR(256) NOT NULL,\n" + // Actual token used to identify the credential
+     * "        CREDENTIAL BLOB NOT NULL,\n" + "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" + "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n"
+     * + ")";
      */
     public Credential getCredential(String gatewayName, String tokenId, Connection connection)
             throws CredentialStoreException {
@@ -207,9 +213,8 @@ public class CredentialsDAO extends Pare
 
             ResultSet resultSet = preparedStatement.executeQuery();
 
-
             if (resultSet.next()) {
-                //CertificateCredential certificateCredential = new CertificateCredential();
+                // CertificateCredential certificateCredential = new CertificateCredential();
 
                 Blob blobCredentials = resultSet.getBlob("CREDENTIAL");
                 byte[] certificate = blobCredentials.getBytes(1, (int) blobCredentials.length());
@@ -231,8 +236,8 @@ public class CredentialsDAO extends Pare
 
             throw new CredentialStoreException(stringBuilder.toString(), e);
         } catch (ClassNotFoundException e) {
-            StringBuilder stringBuilder = new StringBuilder("Error retrieving credentials for community user. Error " +
-                    "de-serializing credential objects.");
+            StringBuilder stringBuilder = new StringBuilder("Error retrieving credentials for community user. Error "
+                    + "de-serializing credential objects.");
             stringBuilder.append("gateway - ").append(gatewayName);
             stringBuilder.append("token id - ").append(tokenId);
 
@@ -240,8 +245,8 @@ public class CredentialsDAO extends Pare
 
             throw new CredentialStoreException(stringBuilder.toString(), e);
         } catch (IOException e) {
-            StringBuilder stringBuilder = new StringBuilder("Error retrieving credentials for community user. Error " +
-                    "de-serializing credential objects. An IO Error.");
+            StringBuilder stringBuilder = new StringBuilder("Error retrieving credentials for community user. Error "
+                    + "de-serializing credential objects. An IO Error.");
             stringBuilder.append("gateway - ").append(gatewayName);
             stringBuilder.append("tokenId - ").append(tokenId);
 
@@ -255,20 +260,14 @@ public class CredentialsDAO extends Pare
         return null;
     }
 
-
     /**
-     * String createTable = "CREATE TABLE CREDENTIALS\n" +
-     "(\n" +
-     "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
-     "        TOKEN_ID VARCHAR(256) NOT NULL,\n" +       // Actual token used to identify the credential
-     "        CREDENTIAL BLOB NOT NULL,\n" +
-     "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
-     "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" +
-     "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" +
-     ")";
+     * String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n" + "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TOKEN_ID VARCHAR(256) NOT NULL,\n" + // Actual token used to identify the credential
+     * "        CREDENTIAL BLOB NOT NULL,\n" + "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
+     * "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" + "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n"
+     * + ")";
      */
-    public List<Credential> getCredentials(String gatewayName, Connection connection)
-            throws CredentialStoreException {
+    public List<Credential> getCredentials(String gatewayName, Connection connection) throws CredentialStoreException {
 
         List<Credential> credentialList = new ArrayList<Credential>();
 
@@ -326,10 +325,8 @@ public class CredentialsDAO extends Pare
         return credentialList;
     }
 
-    public static Object convertByteArrayToObject(byte[] data) throws IOException,
-            ClassNotFoundException {
-        ObjectInputStream objectInputStream = new ObjectInputStream(
-                new ByteArrayInputStream(data));
+    public static Object convertByteArrayToObject(byte[] data) throws IOException, ClassNotFoundException {
+        ObjectInputStream objectInputStream = new ObjectInputStream(new ByteArrayInputStream(data));
         Object o = null;
         try {
             o = objectInputStream.readObject();

Modified: airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/ParentDAO.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/ParentDAO.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/ParentDAO.java (original)
+++ airavata/trunk/modules/credential-store/src/main/java/org/apache/airavata/credential/store/store/impl/db/ParentDAO.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl.db;
 
 import org.apache.airavata.common.utils.DBUtil;

Modified: airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAOTest.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAOTest.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAOTest.java (original)
+++ airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CommunityUserDAOTest.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl.db;
 
 import org.apache.airavata.common.utils.DBUtil;
@@ -17,27 +38,26 @@ public class CommunityUserDAOTest extend
     private CommunityUserDAO communityUserDAO;
 
     @BeforeClass
-    public static void setUpDatabase() throws Exception{
+    public static void setUpDatabase() throws Exception {
 
         DerbyUtil.startDerbyInServerMode(getHostAddress(), getPort(), getUserName(), getPassword());
 
         waitTillServerStarts();
 
-        String createTable = "CREATE TABLE COMMUNITY_USER\n" +
-                "                (\n" +
-                "                        GATEWAY_NAME VARCHAR(256) NOT NULL,\n" +
-                "                        COMMUNITY_USER_NAME VARCHAR(256) NOT NULL,\n" +
-                "                        TOKEN_ID VARCHAR(256) NOT NULL,\n" +
-                "                        COMMUNITY_USER_EMAIL VARCHAR(256) NOT NULL,\n" +
-                "                        PRIMARY KEY (GATEWAY_NAME, COMMUNITY_USER_NAME, TOKEN_ID)\n" +
-                "                )";
-
+        String createTable = "CREATE TABLE COMMUNITY_USER\n" + "                (\n"
+                + "                        GATEWAY_NAME VARCHAR(256) NOT NULL,\n"
+                + "                        COMMUNITY_USER_NAME VARCHAR(256) NOT NULL,\n"
+                + "                        TOKEN_ID VARCHAR(256) NOT NULL,\n"
+                + "                        COMMUNITY_USER_EMAIL VARCHAR(256) NOT NULL,\n"
+                + "                        PRIMARY KEY (GATEWAY_NAME, COMMUNITY_USER_NAME, TOKEN_ID)\n"
+                + "                )";
 
         String dropTable = "drop table COMMUNITY_USER";
 
         try {
             executeSQL(dropTable);
-        } catch (Exception e){}
+        } catch (Exception e) {
+        }
 
         executeSQL(createTable);
 
@@ -70,10 +90,10 @@ public class CommunityUserDAOTest extend
 
         try {
 
-            CommunityUser communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            CommunityUser communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.addCommunityUser(communityUser, "Token1", connection);
 
-            communityUser = new CommunityUser("gw1", "ogce2","ogce@sciencegateway.org");
+            communityUser = new CommunityUser("gw1", "ogce2", "ogce@sciencegateway.org");
             communityUserDAO.addCommunityUser(communityUser, "Token2", connection);
 
             CommunityUser user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
@@ -106,13 +126,13 @@ public class CommunityUserDAOTest extend
         Connection connection = getConnection();
 
         try {
-            CommunityUser communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            CommunityUser communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.addCommunityUser(communityUser, "Token1", connection);
 
             CommunityUser user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
             Assert.assertNotNull(user);
 
-            communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.deleteCommunityUser(communityUser, connection);
 
             user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
@@ -129,13 +149,13 @@ public class CommunityUserDAOTest extend
         Connection connection = getConnection();
 
         try {
-            CommunityUser communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            CommunityUser communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.addCommunityUser(communityUser, "Token1", connection);
 
             CommunityUser user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
             Assert.assertNotNull(user);
 
-            communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.deleteCommunityUserByToken(communityUser, "Token1", connection);
 
             user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
@@ -145,7 +165,6 @@ public class CommunityUserDAOTest extend
             connection.close();
         }
 
-
     }
 
     @Test
@@ -154,7 +173,7 @@ public class CommunityUserDAOTest extend
         Connection connection = getConnection();
 
         try {
-            CommunityUser communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+            CommunityUser communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
             communityUserDAO.addCommunityUser(communityUser, "Token1", connection);
 
             CommunityUser user = communityUserDAO.getCommunityUser("gw1", "ogce", connection);
@@ -165,7 +184,6 @@ public class CommunityUserDAOTest extend
             connection.close();
         }
 
-
     }
 
     @Test
@@ -173,10 +191,10 @@ public class CommunityUserDAOTest extend
 
         Connection connection = getConnection();
 
-        CommunityUser communityUser = new CommunityUser("gw1", "ogce","ogce@sciencegateway.org");
+        CommunityUser communityUser = new CommunityUser("gw1", "ogce", "ogce@sciencegateway.org");
         communityUserDAO.addCommunityUser(communityUser, "Token1", connection);
 
-        communityUser = new CommunityUser("gw1", "ogce2","ogce@sciencegateway.org");
+        communityUser = new CommunityUser("gw1", "ogce2", "ogce@sciencegateway.org");
         communityUserDAO.addCommunityUser(communityUser, "Token2", connection);
 
         List<CommunityUser> users = communityUserDAO.getCommunityUsers("gw1", connection);

Modified: airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAOTest.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAOTest.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAOTest.java (original)
+++ airavata/trunk/modules/credential-store/src/test/java/org/apache/airavata/credential/store/store/impl/db/CredentialsDAOTest.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.credential.store.store.impl.db;
 
 import junit.framework.Assert;
@@ -40,36 +61,30 @@ public class CredentialsDAOTest extends 
 
         waitTillServerStarts();
 
-        /*String createTable = "CREATE TABLE CREDENTIALS\n" +
-                "(\n" +
-                "        GATEWAY_NAME VARCHAR(256) NOT NULL,\n" +
-                "        COMMUNITY_USER_NAME VARCHAR(256) NOT NULL,\n" +
-                "        CREDENTIAL BLOB NOT NULL,\n" +
-                "        PRIVATE_KEY BLOB NOT NULL,\n" +
-                "        NOT_BEFORE VARCHAR(256) NOT NULL,\n" +
-                "        NOT_AFTER VARCHAR(256) NOT NULL,\n" +
-                "        LIFETIME INTEGER NOT NULL,\n" +
-                "        REQUESTING_PORTAL_USER_NAME VARCHAR(256) NOT NULL,\n" +
-                "        REQUESTED_TIME TIMESTAMP DEFAULT '0000-00-00 00:00:00',\n" +
-                "        PRIMARY KEY (GATEWAY_NAME, COMMUNITY_USER_NAME)\n" +
-                ")"; */
-
-        String createTable = "CREATE TABLE CREDENTIALS\n" +
-                "(\n" +
-                "        GATEWAY_ID VARCHAR(256) NOT NULL,\n" +
-                "        TOKEN_ID VARCHAR(256) NOT NULL,\n" +       // Actual token used to identify the credential
-                "        CREDENTIAL BLOB NOT NULL,\n" +
-                "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n" +
-                "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n" +
-                "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" +
-                ")";
-
+        /*
+         * String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n" + "        GATEWAY_NAME VARCHAR(256) NOT NULL,\n" +
+         * "        COMMUNITY_USER_NAME VARCHAR(256) NOT NULL,\n" + "        CREDENTIAL BLOB NOT NULL,\n" +
+         * "        PRIVATE_KEY BLOB NOT NULL,\n" + "        NOT_BEFORE VARCHAR(256) NOT NULL,\n" +
+         * "        NOT_AFTER VARCHAR(256) NOT NULL,\n" + "        LIFETIME INTEGER NOT NULL,\n" +
+         * "        REQUESTING_PORTAL_USER_NAME VARCHAR(256) NOT NULL,\n" +
+         * "        REQUESTED_TIME TIMESTAMP DEFAULT '0000-00-00 00:00:00',\n" +
+         * "        PRIMARY KEY (GATEWAY_NAME, COMMUNITY_USER_NAME)\n" + ")";
+         */
+
+        String createTable = "CREATE TABLE CREDENTIALS\n" + "(\n"
+                + "        GATEWAY_ID VARCHAR(256) NOT NULL,\n"
+                + "        TOKEN_ID VARCHAR(256) NOT NULL,\n"
+                + // Actual token used to identify the credential
+                "        CREDENTIAL BLOB NOT NULL,\n" + "        PORTAL_USER_ID VARCHAR(256) NOT NULL,\n"
+                + "        TIME_PERSISTED TIMESTAMP DEFAULT CURRENT_TIMESTAMP,\n"
+                + "        PRIMARY KEY (GATEWAY_ID, TOKEN_ID)\n" + ")";
 
         String dropTable = "drop table CREDENTIALS";
 
         try {
             executeSQL(dropTable);
-        } catch (Exception e) {}
+        } catch (Exception e) {
+        }
 
         executeSQL(createTable);
 
@@ -97,7 +112,6 @@ public class CredentialsDAOTest extends 
         initializeKeys();
     }
 
-
     private void initializeKeys() throws Exception {
         KeyStore ks = KeyStore.getInstance("JKS");
         char[] password = "password".toCharArray();
@@ -137,7 +151,6 @@ public class CredentialsDAOTest extends 
 
     }
 
-
     @Test
     public void testKeyReading() throws Exception {
         initializeKeys();
@@ -188,13 +201,18 @@ public class CredentialsDAOTest extends 
         CertificateCredential certificateCredential = getTestCredentialObject();
 
         byte[] array = CredentialsDAO.convertObjectToByteArray(certificateCredential);
-        CertificateCredential readCertificateCredential = (CertificateCredential) CredentialsDAO.convertByteArrayToObject(array);
+        CertificateCredential readCertificateCredential = (CertificateCredential) CredentialsDAO
+                .convertByteArrayToObject(array);
 
         Assert.assertEquals(certificateCredential.getCertificate(), readCertificateCredential.getCertificate());
-        Assert.assertEquals(certificateCredential.getCertificateRequestedTime(), readCertificateCredential.getCertificateRequestedTime());
-        Assert.assertEquals(certificateCredential.getCommunityUser().getGatewayName(), readCertificateCredential.getCommunityUser().getGatewayName());
-        Assert.assertEquals(certificateCredential.getCommunityUser().getUserEmail(), readCertificateCredential.getCommunityUser().getUserEmail());
-        Assert.assertEquals(certificateCredential.getCommunityUser().getUserName(), readCertificateCredential.getCommunityUser().getUserName());
+        Assert.assertEquals(certificateCredential.getCertificateRequestedTime(),
+                readCertificateCredential.getCertificateRequestedTime());
+        Assert.assertEquals(certificateCredential.getCommunityUser().getGatewayName(), readCertificateCredential
+                .getCommunityUser().getGatewayName());
+        Assert.assertEquals(certificateCredential.getCommunityUser().getUserEmail(), readCertificateCredential
+                .getCommunityUser().getUserEmail());
+        Assert.assertEquals(certificateCredential.getCommunityUser().getUserName(), readCertificateCredential
+                .getCommunityUser().getUserName());
         Assert.assertEquals(certificateCredential.getLifeTime(), readCertificateCredential.getLifeTime());
         Assert.assertEquals(certificateCredential.getNotAfter(), readCertificateCredential.getNotAfter());
         Assert.assertEquals(certificateCredential.getNotBefore(), readCertificateCredential.getNotBefore());
@@ -218,8 +236,8 @@ public class CredentialsDAOTest extends 
         Connection connection = getConnection();
 
         try {
-            CertificateCredential certificateCredential
-                    = (CertificateCredential)credentialsDAO.getCredential("gw1", "tom", connection);
+            CertificateCredential certificateCredential = (CertificateCredential) credentialsDAO.getCredential("gw1",
+                    "tom", connection);
             Assert.assertNotNull(certificateCredential);
             Assert.assertEquals("jerry", certificateCredential.getPortalUserName());
             Assert.assertEquals(x509Certificate, certificateCredential.getCertificate());
@@ -237,13 +255,13 @@ public class CredentialsDAOTest extends 
         Connection connection = getConnection();
 
         try {
-            CertificateCredential certificateCredential
-                    = (CertificateCredential)credentialsDAO.getCredential("gw1", "tom", connection);
+            CertificateCredential certificateCredential = (CertificateCredential) credentialsDAO.getCredential("gw1",
+                    "tom", connection);
             Assert.assertNotNull(certificateCredential);
 
             credentialsDAO.deleteCredentials("gw1", "tom", connection);
 
-            certificateCredential = (CertificateCredential)credentialsDAO.getCredential("gw1", "tom", connection);
+            certificateCredential = (CertificateCredential) credentialsDAO.getCredential("gw1", "tom", connection);
             Assert.assertNull(certificateCredential);
 
         } finally {
@@ -264,7 +282,7 @@ public class CredentialsDAOTest extends 
             certificateCredential.setToken("tom");
             certificateCredential.setCommunityUser(communityUser);
             certificateCredential.setCertificate(x509Certificate);
-            //certificateCredential.setPrivateKey(privateKey);
+            // certificateCredential.setPrivateKey(privateKey);
             certificateCredential.setPortalUserName("test2");
             certificateCredential.setLifeTime(50);
             certificateCredential.setNotBefore("15 OCT 2012 5:34:23");
@@ -272,11 +290,11 @@ public class CredentialsDAOTest extends 
 
             credentialsDAO.updateCredentials(communityUser.getGatewayName(), certificateCredential, connection);
 
-            certificateCredential = (CertificateCredential)credentialsDAO.getCredential("gw1", "tom", connection);
+            certificateCredential = (CertificateCredential) credentialsDAO.getCredential("gw1", "tom", connection);
 
             Assert.assertEquals("CN=Airavata Project, OU=IU, O=Indiana University, L=Bloomington, ST=IN, C=US",
                     certificateCredential.getCertificate().getIssuerDN().toString());
-            //Assert.assertNotNull(certificateCredential.getPrivateKey());
+            // Assert.assertNotNull(certificateCredential.getPrivateKey());
             Assert.assertEquals("test2", certificateCredential.getPortalUserName());
 
         } finally {
@@ -294,10 +312,11 @@ public class CredentialsDAOTest extends 
 
         try {
 
-            CertificateCredential certificateCredential = (CertificateCredential)credentialsDAO.getCredential("gw1", "tom", connection);
+            CertificateCredential certificateCredential = (CertificateCredential) credentialsDAO.getCredential("gw1",
+                    "tom", connection);
             Assert.assertEquals("CN=Airavata Project, OU=IU, O=Indiana University, L=Bloomington, ST=IN, C=US",
                     certificateCredential.getCertificate().getIssuerDN().toString());
-           // Assert.assertNotNull(certificateCredential.getPrivateKey());
+            // Assert.assertNotNull(certificateCredential.getPrivateKey());
 
         } finally {
             connection.close();

Modified: airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExecutionErrorResource.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExecutionErrorResource.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExecutionErrorResource.java (original)
+++ airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExecutionErrorResource.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.persistance.registry.jpa.resources;
 
 import java.sql.Timestamp;
@@ -76,13 +97,12 @@ public class ExecutionErrorResource exte
         execution_error.setGfacJobID(gfacJobID);
         em.persist(execution_error);
         errorID = execution_error.getError_id();
-//        System.out.println("Error ID : " + errorID);
+        // System.out.println("Error ID : " + errorID);
         em.getTransaction().commit();
         em.close();
 
     }
 
-
     public ExperimentDataResource getExperimentDataResource() {
         return experimentDataResource;
     }

Modified: airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExecutionErrorsList.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExecutionErrorsList.java?rev=1497993&r1=1497992&r2=1497993&view=diff
==============================================================================
--- airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExecutionErrorsList.java (original)
+++ airavata/trunk/modules/rest/mappings/src/main/java/org/apache/airavata/rest/mappings/resourcemappings/ExecutionErrorsList.java Sat Jun 29 18:20:44 2013
@@ -1,3 +1,24 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
 package org.apache.airavata.rest.mappings.resourcemappings;
 
 import org.apache.airavata.registry.api.workflow.ExecutionError;