[GitHub] [arrow] eddelbuettel commented on issue #6435: CRAN package installation issues on Linux

[GitBox <gi...@apache.org>]

eddelbuettel commented on issue #6435:
URL: https://github.com/apache/arrow/issues/6435#issuecomment-632074661


   CRAN package arrow (0.17.0, 0.17.1) continues to fail to install on a very standard Ubuntu 19.10 machine _which happens to have `libthrift-0.11.0` and `libthrift-dev` installed_.  Machine it reasonably powerful so it "only" takes seven minutes to run into this at the end:
   
   ```
   [...other stuff omitted...]
   ccache g++ -std=gnu++11 -Wl,-S -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compress
   ion.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbol
   s.o table.o threadpool.o -L/tmp/Rtmp4fJ9VB/R.INSTALL74767d0fadcf/arrow/libarrow/arrow-0.17.1/lib -larrow_dataset -lparquet -larrow -larrow -larrow_dataset -ljemalloc_pic -lparquet -L/usr/lib/R/lib -lR
   installing to /usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs
   ** R
   ** inst
   ** byte-compile and prepare package for lazy loading
   ** help
   *** installing help indices
   ** building package indices
   ** installing vignettes
   ** testing if installed package can be loaded from temporary location
   Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
    unable to load shared object '/usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs/arrow.so':
     /usr/local/lib/R/site-library/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: _ZTIN6apache6thrift8protocol9TProtocolE
   Error: loading failed
   Execution halted
   ERROR: loading failed
   * removing ‘/usr/local/lib/R/site-library/arrow’
   
   The downloaded source packages are in
           ‘/tmp/downloaded_packages’
   Warning message:
   In install.packages(pkgs = argv, lib = lib.loc, repos = repos, Ncpus = getOption("Ncpus",  :
     installation of package ‘arrow’ had non-zero exit status
   ```
   
   The package does install, however, on a (smaller) machine (that does not have thrift installed).  It would be nice if you could dive into, say, a Docker container or VM and see why the presence of Thrift leads the build astray.


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