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Posted to commits@uima.apache.org by sc...@apache.org on 2007/04/12 17:55:03 UTC

svn commit: r527996 [4/9] - in /incubator/uima/uimaj/trunk/uima-docbooks/src: docbook/ docbook/overview_and_setup/ docbook/references/ docbook/tools/ docbook/tutorials_and_users_guides/ olink/overview_and_setup/ olink/references/ olink/tools/ olink/tut...

Modified: incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/htmlsingle-target.db
URL: http://svn.apache.org/viewvc/incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/htmlsingle-target.db?view=diff&rev=527996&r1=527995&r2=527996
==============================================================================
--- incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/htmlsingle-target.db (original)
+++ incubator/uima/uimaj/trunk/uima-docbooks/src/olink/references/htmlsingle-target.db Thu Apr 12 08:54:59 2007
@@ -1,575 +1 @@
-<div element="book" href="#d0e2" number="" lang="en">
-   <ttl>UIMA References</ttl>
-   <xreftext>UIMA References</xreftext>
-   <div element="chapter" href="#ugr.ref.javadocs" number="1" targetptr="ugr.ref.javadocs">
-      <ttl>Javadocs</ttl>
-      <xreftext>Chapter 1, <i>Javadocs</i>
-      </xreftext>
-   </div>
-   <div element="chapter" href="#ugr.ref.xml.component_descriptor" number="2" targetptr="ugr.ref.xml.component_descriptor">
-      <ttl>Component Descriptor Reference</ttl>
-      <xreftext>Chapter 2, <i>Component Descriptor Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.notation" number="2.1" targetptr="ugr.ref.xml.component_descriptor.notation">
-         <ttl>Notation</ttl>
-         <xreftext>Section 2.1, “Notation”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.imports" number="2.2" targetptr="ugr.ref.xml.component_descriptor.imports">
-         <ttl>Imports</ttl>
-         <xreftext>Section 2.2, “Imports”</xreftext>
-         <obj element="para" href="#ugr.ref.xml.component_descriptor.datapath" number="" targetptr="ugr.ref.xml.component_descriptor.datapath">
-            <ttl>???TITLE???</ttl>
-            <xreftext>Section 2.2, “Imports”</xreftext>
-         </obj>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.type_system" number="2.3" targetptr="ugr.ref.xml.component_descriptor.type_system">
-         <ttl>Type System Descriptors</ttl>
-         <xreftext>Section 2.3, “Type System Descriptors”</xreftext>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.type_system.imports" number="2.3.1" targetptr="ugr.ref.xml.component_descriptor.type_system.imports">
-            <ttl>Imports</ttl>
-            <xreftext>Section 2.3.1, “Imports”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.type_system.types" number="2.3.2" targetptr="ugr.ref.xml.component_descriptor.type_system.types">
-            <ttl>Types</ttl>
-            <xreftext>Section 2.3.2, “Types”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.type_system.features" number="2.3.3" targetptr="ugr.ref.xml.component_descriptor.type_system.features">
-            <ttl>Features</ttl>
-            <xreftext>Section 2.3.3, “Features”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.type_system.string_subtypes" number="2.3.4" targetptr="ugr.ref.xml.component_descriptor.type_system.string_subtypes">
-            <ttl>String Subtypes</ttl>
-            <xreftext>Section 2.3.4, “String Subtypes”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.aes" number="2.4" targetptr="ugr.ref.xml.component_descriptor.aes">
-         <ttl>Analysis Engine Descriptors</ttl>
-         <xreftext>Section 2.4, “Analysis Engine Descriptors”</xreftext>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive" number="2.4.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive">
-            <ttl>Primitive Analysis Engine Descriptors</ttl>
-            <xreftext>Section 2.4.1, “Primitive Analysis Engine Descriptors”</xreftext>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.basic" number="2.4.1.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.basic">
-               <ttl>Basic Structure</ttl>
-               <xreftext>Section 2.4.1.1, “Basic Structure”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.metadata" number="2.4.1.2" targetptr="ugr.ref.xml.component_descriptor.aes.metadata">
-               <ttl>Analysis Engine MetaData</ttl>
-               <xreftext>Section 2.4.1.2, “Analysis Engine MetaData”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration" number="2.4.1.3" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration">
-               <ttl>Configuration Parameter Declaration</ttl>
-               <xreftext>Section 2.4.1.3, “Configuration Parameter Declaration”</xreftext>
-               <div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example">
-                  <ttl>Example</ttl>
-                  <xreftext>the section called “Example”</xreftext>
-               </div>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings" number="2.4.1.4" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings">
-               <ttl>Configuration Parameter Settings</ttl>
-               <xreftext>Section 2.4.1.4, “Configuration Parameter Settings”</xreftext>
-               <div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example">
-                  <ttl>Example</ttl>
-                  <xreftext>the section called “Example”</xreftext>
-               </div>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_system" number="2.4.1.5" targetptr="ugr.ref.xml.component_descriptor.aes.type_system">
-               <ttl>Type System Definition</ttl>
-               <xreftext>Section 2.4.1.5, “Type System Definition”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_priority" number="2.4.1.6" targetptr="ugr.ref.xml.component_descriptor.aes.type_priority">
-               <ttl>Type Priority Definition</ttl>
-               <xreftext>Section 2.4.1.6, “Type Priority Definition”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.index" number="2.4.1.7" targetptr="ugr.ref.xml.component_descriptor.aes.index">
-               <ttl>Index Definition</ttl>
-               <xreftext>Section 2.4.1.7, “Index Definition”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.capabilities" number="2.4.1.8" targetptr="ugr.ref.xml.component_descriptor.aes.capabilities">
-               <ttl>Capabilities</ttl>
-               <xreftext>Section 2.4.1.8, “Capabilities”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.operational_properties" number="2.4.1.9" targetptr="ugr.ref.xml.component_descriptor.aes.operational_properties">
-               <ttl>OperationalProperties</ttl>
-               <xreftext>Section 2.4.1.9, “OperationalProperties”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies" number="2.4.1.10" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies">
-               <ttl>External Resource Dependencies</ttl>
-               <xreftext>Section 2.4.1.10, “External Resource Dependencies”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration" number="2.4.1.11" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration">
-               <ttl>Resource Manager Configuration</ttl>
-               <xreftext>Section 2.4.1.11, “Resource Manager Configuration”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.environment_variable_references" number="2.4.1.12" targetptr="ugr.ref.xml.component_descriptor.aes.environment_variable_references">
-               <ttl>Environment Variable References</ttl>
-               <xreftext>Section 2.4.1.12, “Environment Variable References”</xreftext>
-            </div>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate" number="2.4.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate">
-            <ttl>Aggregate Analysis Engine Descriptors</ttl>
-            <xreftext>Section 2.4.2, “Aggregate Analysis Engine Descriptors”</xreftext>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.delegates" number="2.4.2.1" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.delegates">
-               <ttl>Delegate Analysis Engine Specifiers</ttl>
-               <xreftext>Section 2.4.2.1, “Delegate Analysis Engine Specifiers”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller" number="2.4.2.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller">
-               <ttl>FlowController</ttl>
-               <xreftext>Section 2.4.2.2, “FlowController”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints" number="2.4.2.3" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints">
-               <ttl>FlowConstraints</ttl>
-               <xreftext>Section 2.4.2.3, “FlowConstraints”</xreftext>
-               <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow">
-                  <ttl>Fixed Flow</ttl>
-                  <xreftext>the section called “Fixed Flow”</xreftext>
-               </div>
-               <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow">
-                  <ttl>Capability Language Flow</ttl>
-                  <xreftext>the section called “Capability Language Flow”</xreftext>
-               </div>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides" number="2.4.2.4" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides">
-               <ttl>Configuration Parameter Overrides</ttl>
-               <xreftext>Section 2.4.2.4, “Configuration Parameter Overrides”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings" number="2.4.2.5" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings">
-               <ttl>External Resource Bindings</ttl>
-               <xreftext>Section 2.4.2.5, “External Resource Bindings”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings" number="2.4.2.6" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings">
-               <ttl>Sofa Mappings</ttl>
-               <xreftext>Section 2.4.2.6, “Sofa Mappings”</xreftext>
-            </div>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.flow_controller" number="2.5" targetptr="ugr.ref.xml.component_descriptor.flow_controller">
-         <ttl>Flow Controller Descriptors</ttl>
-         <xreftext>Section 2.5, “Flow Controller Descriptors”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts" number="2.6" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts">
-         <ttl>Collection Processing Component Descriptors</ttl>
-         <xreftext>Section 2.6, “Collection Processing Component Descriptors”</xreftext>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader" number="2.6.1" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader">
-            <ttl>Collection Reader Descriptors</ttl>
-            <xreftext>Section 2.6.1, “Collection Reader Descriptors”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer" number="2.6.2" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer">
-            <ttl>CAS Initializer Descriptors (deprecated)</ttl>
-            <xreftext>Section 2.6.2, “CAS Initializer Descriptors (deprecated)”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer" number="2.6.3" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer">
-            <ttl>CAS Consumer Descriptors</ttl>
-            <xreftext>Section 2.6.3, “CAS Consumer Descriptors”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xml.component_descriptor.service_client" number="2.7" targetptr="ugr.ref.xml.component_descriptor.service_client">
-         <ttl>Service Client Descriptors</ttl>
-         <xreftext>Section 2.7, “Service Client Descriptors”</xreftext>
-      </div>
-   </div>
-   <div element="chapter" href="#ugr.ref.xml.cpe_descriptor" number="3" targetptr="ugr.ref.xml.cpe_descriptor">
-      <ttl>Collection Processing Engine Descriptor Reference</ttl>
-      <xreftext>Chapter 3, <i>Collection Processing Engine Descriptor Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.overview" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview">
-         <ttl>CPE Overview</ttl>
-         <xreftext>Section 3.1, “CPE Overview”</xreftext>
-         <obj element="figure" href="#ugr.ref.xml.cpe_descriptor.overview.fig.runtime" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview.fig.runtime">
-            <ttl>CPE Runtime Overview</ttl>
-            <xreftext>Figure 3.1, “CPE Runtime Overview”</xreftext>
-         </obj>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.notation" number="3.2" targetptr="ugr.ref.xml.cpe_descriptor.notation">
-         <ttl>Notation</ttl>
-         <xreftext>Section 3.2, “Notation”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.imports" number="3.3" targetptr="ugr.ref.xml.cpe_descriptor.imports">
-         <ttl>Imports</ttl>
-         <xreftext>Section 3.3, “Imports”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor" number="3.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor">
-         <ttl>CPE Descriptor Overview</ttl>
-         <xreftext>Section 3.4, “CPE Descriptor Overview”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader" number="3.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader">
-         <ttl>Collection Reader</ttl>
-         <xreftext>Section 3.5, “Collection Reader”</xreftext>
-         <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling" number="3.5.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling">
-            <ttl>Error handling for Collection Readers</ttl>
-            <xreftext>Section 3.5.1, “Error handling for Collection Readers”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors" number="3.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors">
-         <ttl>CAS Processors</ttl>
-         <xreftext>Section 3.6, “CAS Processors”</xreftext>
-         <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual" number="3.6.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual">
-            <ttl>Specifying an Individual CAS Processor</ttl>
-            <xreftext>Section 3.6.1, “Specifying an Individual CAS Processor”</xreftext>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor" number="3.6.1.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor">
-               <ttl>&lt;descriptor&gt; Element</ttl>
-               <xreftext>Section 3.6.1.1, “&lt;descriptor&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings" number="3.6.1.2" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings">
-               <ttl>&lt;configurationParameterSettings&gt; Element</ttl>
-               <xreftext>Section 3.6.1.2, “&lt;configurationParameterSettings&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings" number="3.6.1.3" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings">
-               <ttl>&lt;sofaNameMappings&gt; Element</ttl>
-               <xreftext>Section 3.6.1.3, “&lt;sofaNameMappings&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process" number="3.6.1.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process">
-               <ttl>&lt;runInSeparateProcess&gt; Element</ttl>
-               <xreftext>Section 3.6.1.4, “&lt;runInSeparateProcess&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters" number="3.6.1.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters">
-               <ttl>&lt;deploymentParameters&gt; Element</ttl>
-               <xreftext>Section 3.6.1.5, “&lt;deploymentParameters&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter" number="3.6.1.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter">
-               <ttl>&lt;filter&gt; Element</ttl>
-               <xreftext>Section 3.6.1.6, “&lt;filter&gt; Element”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling" number="3.6.1.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling">
-               <ttl>&lt;errorHandling&gt; Element</ttl>
-               <xreftext>Section 3.6.1.7, “&lt;errorHandling&gt; Element”</xreftext>
-               <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action" number="" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action">
-                  <ttl>Retry action taken on a timeout</ttl>
-                  <xreftext>the section called “Retry action taken on a timeout”</xreftext>
-               </div>
-            </div>
-            <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint" number="3.6.1.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint">
-               <ttl>&lt;checkpoint&gt; Element</ttl>
-               <xreftext>Section 3.6.1.8, “&lt;checkpoint&gt; Element”</xreftext>
-            </div>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters" number="3.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters">
-         <ttl>CPE Operational Parameters</ttl>
-         <xreftext>Section 3.7, “CPE Operational Parameters”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration" number="3.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration">
-         <ttl>Resource Manager Configuration</ttl>
-         <xreftext>Section 3.8, “Resource Manager Configuration”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.example" number="3.9" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.example">
-         <ttl>Example CPE Descriptor</ttl>
-         <xreftext>Section 3.9, “Example CPE Descriptor”</xreftext>
-      </div>
-   </div>
-   <div element="chapter" href="#ugr.ref.cas" number="4" targetptr="ugr.ref.cas">
-      <ttl>CAS Reference</ttl>
-      <xreftext>Chapter 4, <i>CAS Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.cas.javadocs" number="4.1" targetptr="ugr.ref.cas.javadocs">
-         <ttl>JavaDocs</ttl>
-         <xreftext>Section 4.1, “JavaDocs”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.cas.overview" number="4.2" targetptr="ugr.ref.cas.overview">
-         <ttl>CAS Overview</ttl>
-         <xreftext>Section 4.2, “CAS Overview”</xreftext>
-         <div element="section" href="#ugr.ref.cas.type_system" number="4.2.1" targetptr="ugr.ref.cas.type_system">
-            <ttl>The Type System</ttl>
-            <xreftext>Section 4.2.1, “The Type System”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.creating_accessing_manipulating_data" number="4.2.2" targetptr="ugr.ref.cas.creating_accessing_manipulating_data">
-            <ttl>Creating, accessing and manipulating data</ttl>
-            <xreftext>Section 4.2.2, “Creating/Accessing/Changing data”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.creating_using_indexes" number="4.2.3" targetptr="ugr.ref.cas.creating_using_indexes">
-            <ttl>Creating and using indexes</ttl>
-            <xreftext>Section 4.2.3, “Creating and using indexes”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.cas.builtin_types" number="4.3" targetptr="ugr.ref.cas.builtin_types">
-         <ttl>Built-in CAS Types</ttl>
-         <xreftext>Section 4.3, “Built-in CAS Types”</xreftext>
-         <obj element="para" href="#ugr.ref.cas.document_annotation" number="" targetptr="ugr.ref.cas.document_annotation">
-            <ttl>???TITLE???</ttl>
-            <xreftext>Section 4.3, “Built-in CAS Types”</xreftext>
-         </obj>
-      </div>
-      <div element="section" href="#ugr.ref.cas.accessing_the_type_system" number="4.4" targetptr="ugr.ref.cas.accessing_the_type_system">
-         <ttl>Accessing the type system</ttl>
-         <xreftext>Section 4.4, “Accessing the type system”</xreftext>
-         <div element="section" href="#ugr.ref.cas.type_system.printer_example" number="4.4.1" targetptr="ugr.ref.cas.type_system.printer_example">
-            <ttl>TypeSystemPrinter example</ttl>
-            <xreftext>Section 4.4.1, “TypeSystemPrinter example”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.cas_apis_create_modify_feature_structures" number="4.4.2" targetptr="ugr.ref.cas.cas_apis_create_modify_feature_structures">
-            <ttl>Using the CAS APIs to create and modify feature structures</ttl>
-            <xreftext>Section 4.4.2, “Using CAS APIs: Feature Structures”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.cas.creating_feature_structures" number="4.5" targetptr="ugr.ref.cas.creating_feature_structures">
-         <ttl>Creating feature structures</ttl>
-         <xreftext>Section 4.5, “Creating feature structures”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.cas.accessing_modifying_features_of_feature_structures" number="4.6" targetptr="ugr.ref.cas.accessing_modifying_features_of_feature_structures">
-         <ttl>Accessing or modifying features of feature structures</ttl>
-         <xreftext>Section 4.6, “Accessing or modifying Features”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.cas.indexes_and_iterators" number="4.7" targetptr="ugr.ref.cas.indexes_and_iterators">
-         <ttl>Indexes and Iterators</ttl>
-         <xreftext>Section 4.7, “Indexes and Iterators”</xreftext>
-         <div element="section" href="#ugr.ref.cas.index.built_in_indexes" number="4.7.1" targetptr="ugr.ref.cas.index.built_in_indexes">
-            <ttl>Built-in Indexes</ttl>
-            <xreftext>Section 4.7.1, “Built-in Indexes”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.index.adding_to_indexes" number="4.7.2" targetptr="ugr.ref.cas.index.adding_to_indexes">
-            <ttl>Adding Feature Structures to the Indexes</ttl>
-            <xreftext>Section 4.7.2, “Adding Feature Structures to the Indexes”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.index.iterators" number="4.7.3" targetptr="ugr.ref.cas.index.iterators">
-            <ttl>Iterators</ttl>
-            <xreftext>Section 4.7.3, “Iterators”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.index.annotation_index" number="4.7.4" targetptr="ugr.ref.cas.index.annotation_index">
-            <ttl>Special iterators for Annotation types</ttl>
-            <xreftext>Section 4.7.4, “Special iterators for Annotation types”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.cas.index.constraints_and_filtered_iterators" number="4.7.5" targetptr="ugr.ref.cas.index.constraints_and_filtered_iterators">
-            <ttl>Constraints and Filtered iterators</ttl>
-            <xreftext>Section 4.7.5, “Constraints and Filtered iterators”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.cas.guide_to_javadocs" number="4.8" targetptr="ugr.ref.cas.guide_to_javadocs">
-         <ttl>The CAS API's – a guide to the JavaDocs</ttl>
-         <xreftext>Section 4.8, “CAS API's JavaDocs”</xreftext>
-         <div element="section" href="#ugr.ref.cas.javadocs.cas_package" number="4.8.1" targetptr="ugr.ref.cas.javadocs.cas_package">
-            <ttl>APIs in the CAS package</ttl>
-            <xreftext>Section 4.8.1, “APIs in the CAS package”</xreftext>
-            <obj element="figure" href="#ugr.ref.cas.fig.api_hierarchy" number="4.1" targetptr="ugr.ref.cas.fig.api_hierarchy">
-               <ttl>CAS Object hierarchy</ttl>
-               <xreftext>Figure 4.1, “CAS Object hierarchy”</xreftext>
-            </obj>
-         </div>
-      </div>
-   </div>
-   <div element="chapter" href="#ugr.ref.jcas" number="5" targetptr="ugr.ref.jcas">
-      <ttl>JCas Reference</ttl>
-      <xreftext>Chapter 5, <i>JCas Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.jcas.name_spaces" number="5.1" targetptr="ugr.ref.jcas.name_spaces">
-         <ttl>Name Spaces</ttl>
-         <xreftext>Section 5.1, “Name Spaces”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.use_of_description" number="5.2" targetptr="ugr.ref.jcas.use_of_description">
-         <ttl>The XML description element is copied into generated Java code</ttl>
-         <xreftext>Section 5.2, “Use of XML Description”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.mapping_built_ins" number="5.3" targetptr="ugr.ref.jcas.mapping_built_ins">
-         <ttl>Mapping built-in CAS types to Java types</ttl>
-         <xreftext>Section 5.3, “Mapping built-in CAS types to Java types”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.augmenting_generated_code" number="5.4" targetptr="ugr.ref.jcas.augmenting_generated_code">
-         <ttl>Augmenting the generated Java Code</ttl>
-         <xreftext>Section 5.4, “Augmenting the generated Java Code”</xreftext>
-         <div element="section" href="#ugr.ref.jcas.keeping_augmentations_when_regenerating" number="5.4.1" targetptr="ugr.ref.jcas.keeping_augmentations_when_regenerating">
-            <ttl>Keeping hand-coded augmentations when regenerating</ttl>
-            <xreftext>Section 5.4.1, “Keeping hand-coded augmentations when regenerating”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.additional_constructors" number="5.4.2" targetptr="ugr.ref.jcas.additional_constructors">
-            <ttl>Additional Constructors</ttl>
-            <xreftext>Section 5.4.2, “Additional Constructors”</xreftext>
-            <div element="section" href="#ugr.ref.jcas.using_readobject" number="5.4.2.1" targetptr="ugr.ref.jcas.using_readobject">
-               <ttl>Using readObject</ttl>
-               <xreftext>Section 5.4.2.1, “Using readObject”</xreftext>
-            </div>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.modifying_generated_items" number="5.4.3" targetptr="ugr.ref.jcas.modifying_generated_items">
-            <ttl>Modifying generated items</ttl>
-            <xreftext>Section 5.4.3, “Modifying generated items”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.merging_types_from_other_specs" number="5.5" targetptr="ugr.ref.jcas.merging_types_from_other_specs">
-         <ttl>Merging types from different type system specifications</ttl>
-         <xreftext>Section 5.5, “Merging Types”</xreftext>
-         <div element="section" href="#ugr.ref.jcas.merging_types.aggregates_and_cpes" number="5.5.1" targetptr="ugr.ref.jcas.merging_types.aggregates_and_cpes">
-            <ttl>Aggregate AEs and CPEs as sources of types</ttl>
-            <xreftext>Section 5.5.1, “Aggregate AEs and CPEs as sources of types”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.merging_types.jcasgen_support" number="5.5.2" targetptr="ugr.ref.jcas.merging_types.jcasgen_support">
-            <ttl>JCasGen support for type merging</ttl>
-            <xreftext>Section 5.5.2, “JCasGen support for type merging”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.impact_of_type_merging_on_composability" number="5.5.3" targetptr="ugr.ref.jcas.impact_of_type_merging_on_composability">
-            <ttl>Impact of Type Merging on Composability of Annotators</ttl>
-            <xreftext>Section 5.5.3, “Type Merging impacts on Composability”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.documentannotation_issues" number="5.5.4" targetptr="ugr.ref.jcas.documentannotation_issues">
-            <ttl>Adding Features to DocumentAnnotation</ttl>
-            <xreftext>Section 5.5.4, “Adding Features to DocumentAnnotation”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.using_within_an_annotator" number="5.6" targetptr="ugr.ref.jcas.using_within_an_annotator">
-         <ttl>Using JCas within an Annotator</ttl>
-         <xreftext>Section 5.6, “Using JCas within an Annotator”</xreftext>
-         <div element="section" href="#ugr.ref.jcas.new_instances" number="5.6.1" targetptr="ugr.ref.jcas.new_instances">
-            <ttl>Creating new instances using the Java “<span class="quote">new</span>” operator</ttl>
-            <xreftext>Section 5.6.1, “Creating new instances”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.getters_and_setters" number="5.6.2" targetptr="ugr.ref.jcas.getters_and_setters">
-            <ttl>Getters and Setters</ttl>
-            <xreftext>Section 5.6.2, “Getters and Setters”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.obtaining_refs_to_indexes" number="5.6.3" targetptr="ugr.ref.jcas.obtaining_refs_to_indexes">
-            <ttl>Obtaining references to Indexes</ttl>
-            <xreftext>Section 5.6.3, “Obtaining references to Indexes”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.adding_removing_instances_to_indexes" number="5.6.4" targetptr="ugr.ref.jcas.adding_removing_instances_to_indexes">
-            <ttl>Adding (and removing) instances to (from) indexes</ttl>
-            <xreftext>Section 5.6.4, “Updating Indexes”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.using_iterators" number="5.6.5" targetptr="ugr.ref.jcas.using_iterators">
-            <ttl>Using Iterators</ttl>
-            <xreftext>Section 5.6.5, “Using Iterators”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.class_loaders" number="5.6.6" targetptr="ugr.ref.jcas.class_loaders">
-            <ttl>Class Loaders in UIMA</ttl>
-            <xreftext>Section 5.6.6, “Class Loaders in UIMA”</xreftext>
-            <div element="section" href="#ugr.ref.jcas.class_loaders.optional" number="5.6.6.1" targetptr="ugr.ref.jcas.class_loaders.optional">
-               <ttl>Use of Class Loaders is optional</ttl>
-               <xreftext>Section 5.6.6.1, “Use of Class Loaders is optional”</xreftext>
-            </div>
-         </div>
-         <div element="section" href="#ugr.ref.jcas.accessing_jcas_objects_outside_uima_components" number="5.6.7" targetptr="ugr.ref.jcas.accessing_jcas_objects_outside_uima_components">
-            <ttl>Issues accessing JCas objects outside of UIMA Engine Components</ttl>
-            <xreftext>Section 5.6.7, “Issues accessing JCas objects outside of UIMA Engine Components”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.jcas.setting_up_classpath" number="5.7" targetptr="ugr.ref.jcas.setting_up_classpath">
-         <ttl>Setting up Classpath for JCas</ttl>
-         <xreftext>Section 5.7, “Setting up Classpath for JCas”</xreftext>
-      </div>
-   </div>
-   <div element="chapter" href="#ugr.ref.pear" number="6" targetptr="ugr.ref.pear">
-      <ttl>PEAR Reference</ttl>
-      <xreftext>Chapter 6, <i>PEAR Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.pear.packaging_a_component" number="6.1" targetptr="ugr.ref.pear.packaging_a_component">
-         <ttl>Packaging a UIMA component</ttl>
-         <xreftext>Section 6.1, “Packaging a UIMA component”</xreftext>
-         <div element="section" href="#ugr.ref.pear.creating_pear_structure" number="6.1.1" targetptr="ugr.ref.pear.creating_pear_structure">
-            <ttl>Creating the PEAR structure</ttl>
-            <xreftext>Section 6.1.1, “Creating the PEAR structure”</xreftext>
-            <obj element="figure" href="#ugr.ref.pear.fig.pear_structure" number="6.1" targetptr="ugr.ref.pear.fig.pear_structure">
-               <ttl>The PEAR Structure</ttl>
-               <xreftext>Figure 6.1, “The PEAR Structure”</xreftext>
-            </obj>
-         </div>
-         <div element="section" href="#ugr.ref.pear.populating_pear_structure" number="6.1.2" targetptr="ugr.ref.pear.populating_pear_structure">
-            <ttl>Populating the PEAR structure</ttl>
-            <xreftext>Section 6.1.2, “Populating the PEAR structure”</xreftext>
-            <div element="section" href="#ugr.ref.pear.package_type.standard" number="6.1.2.1" targetptr="ugr.ref.pear.package_type.standard">
-               <ttl>Standard Type</ttl>
-               <xreftext>Section 6.1.2.1, “Standard Type”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.pear.package_type.service" number="6.1.2.2" targetptr="ugr.ref.pear.package_type.service">
-               <ttl>Service Type</ttl>
-               <xreftext>Section 6.1.2.2, “Service Type”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.pear.package_type.network" number="6.1.2.3" targetptr="ugr.ref.pear.package_type.network">
-               <ttl>Network Type</ttl>
-               <xreftext>Section 6.1.2.3, “Network Type”</xreftext>
-            </div>
-         </div>
-         <div element="section" href="#ugr.ref.pear.creating_installation_descriptor" number="6.1.3" targetptr="ugr.ref.pear.creating_installation_descriptor">
-            <ttl>Creating the installation descriptor</ttl>
-            <xreftext>Section 6.1.3, “Creating the installation descriptor”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.pear.installation_descriptor" number="6.1.4" targetptr="ugr.ref.pear.installation_descriptor">
-            <ttl>Documented template for the installation descriptor:</ttl>
-            <xreftext>Section 6.1.4, “Installation Descriptor: template”</xreftext>
-            <div element="section" href="#ugr.ref.pear.installation_descriptor.submitted_component" number="6.1.4.1" targetptr="ugr.ref.pear.installation_descriptor.submitted_component">
-               <ttl>The SUBMITTED_COMPONENT section</ttl>
-               <xreftext>Section 6.1.4.1, “The SUBMITTED_COMPONENT section”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.pear.installation_descriptor.id_name_desc" number="6.1.4.2" targetptr="ugr.ref.pear.installation_descriptor.id_name_desc">
-               <ttl>The ID, NAME, and DESC tags</ttl>
-               <xreftext>Section 6.1.4.2, “The ID, NAME, and DESC tags”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type" number="6.1.4.3" targetptr="ugr.ref.pear.installation_descriptor.deployment_type">
-               <ttl>Tags related to deployment types</ttl>
-               <xreftext>Section 6.1.4.3, “Tags related to deployment types”</xreftext>
-               <div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.standard" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.standard">
-                  <ttl>Standard Type</ttl>
-                  <xreftext>the section called “Standard Type”</xreftext>
-               </div>
-               <div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.service" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.service">
-                  <ttl>Service Type</ttl>
-                  <xreftext>the section called “Service Type”</xreftext>
-               </div>
-               <div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.network" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.network">
-                  <ttl>Network Type</ttl>
-                  <xreftext>the section called “Network Type”</xreftext>
-               </div>
-            </div>
-            <div element="section" href="#ugr.ref.pear.installation_descriptor.collection_reader_cas_consumer" number="6.1.4.4" targetptr="ugr.ref.pear.installation_descriptor.collection_reader_cas_consumer">
-               <ttl>The Collection Reader and CAS Consumer tags</ttl>
-               <xreftext>Section 6.1.4.4, “The Collection Reader and CAS Consumer tags”</xreftext>
-            </div>
-            <div element="section" href="#ugr.ref.pear.installation_descriptor.installation" number="6.1.4.5" targetptr="ugr.ref.pear.installation_descriptor.installation">
-               <ttl>The INSTALLATION section</ttl>
-               <xreftext>Section 6.1.4.5, “The INSTALLATION section”</xreftext>
-            </div>
-         </div>
-         <div element="section" href="#ugr.ref.pear.packaging_into_1_file" number="6.1.5" targetptr="ugr.ref.pear.packaging_into_1_file">
-            <ttl>Packaging the PEAR structure into one file</ttl>
-            <xreftext>Section 6.1.5, “Packaging the PEAR structure into one file”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.pear.installing" number="6.2" targetptr="ugr.ref.pear.installing">
-         <ttl>Installing a PEAR package</ttl>
-         <xreftext>Section 6.2, “Installing a PEAR package”</xreftext>
-         <div element="section" href="#ugr.ref.pear.installing_pear_using_API" number="6.2.1" targetptr="ugr.ref.pear.installing_pear_using_API">
-            <ttl>Installing a PEAR file using the PEAR APIs</ttl>
-            <xreftext>Section 6.2.1, “Installing a PEAR file using the PEAR APIs”</xreftext>
-         </div>
-      </div>
-   </div>
-   <div element="chapter" href="#ugr.ref.xmi" number="7" targetptr="ugr.ref.xmi">
-      <ttl>XMI CAS Serialization Reference</ttl>
-      <xreftext>Chapter 7, <i>XMI CAS Serialization Reference</i>
-      </xreftext>
-      <div element="section" href="#ugr.ref.xmi.xmi_tag" number="7.1" targetptr="ugr.ref.xmi.xmi_tag">
-         <ttl>XMI Tag</ttl>
-         <xreftext>Section 7.1, “XMI Tag”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.feature_structures" number="7.2" targetptr="ugr.ref.xmi.feature_structures">
-         <ttl>Feature Structures</ttl>
-         <xreftext>Section 7.2, “Feature Structures”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.primitive_features" number="7.3" targetptr="ugr.ref.xmi.primitive_features">
-         <ttl>Primitive Features</ttl>
-         <xreftext>Section 7.3, “Primitive Features”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.reference_features" number="7.4" targetptr="ugr.ref.xmi.reference_features">
-         <ttl>Reference Features</ttl>
-         <xreftext>Section 7.4, “Reference Features”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.array_and_list_features" number="7.5" targetptr="ugr.ref.xmi.array_and_list_features">
-         <ttl>Array and List Features</ttl>
-         <xreftext>Section 7.5, “Array and List Features”</xreftext>
-         <div element="section" href="#ugr.ref.xmi.array_and_list_features.as_multi_valued_properties" number="7.5.1" targetptr="ugr.ref.xmi.array_and_list_features.as_multi_valued_properties">
-            <ttl>Arrays and Lists as Multi-Valued Properties</ttl>
-            <xreftext>Section 7.5.1, “Arrays and Lists as Multi-Valued Properties”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xmi.array_and_list_features.as_1st_class_objects" number="7.5.2" targetptr="ugr.ref.xmi.array_and_list_features.as_1st_class_objects">
-            <ttl>Arrays and Lists as First-Class Objects</ttl>
-            <xreftext>Section 7.5.2, “Arrays and Lists as First-Class Objects”</xreftext>
-         </div>
-         <div element="section" href="#ugr.ref.xmi.null_array_list_elements" number="7.5.3" targetptr="ugr.ref.xmi.null_array_list_elements">
-            <ttl>Null Array/List Elements</ttl>
-            <xreftext>Section 7.5.3, “Null Array/List Elements”</xreftext>
-         </div>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.sofas_views" number="7.6" targetptr="ugr.ref.xmi.sofas_views">
-         <ttl>Subjects of Analysis (Sofas) and Views</ttl>
-         <xreftext>Section 7.6, “Subjects of Analysis (Sofas) and Views”</xreftext>
-      </div>
-      <div element="section" href="#ugr.ref.xmi.linking_to_ecore_type_system" number="7.7" targetptr="ugr.ref.xmi.linking_to_ecore_type_system">
-         <ttl>Linking an XMI Document to its Ecore Type System</ttl>
-         <xreftext>Section 7.7, “Linking XMI docs to Ecore Type System”</xreftext>
-      </div>
-   </div>
-</div>
\ No newline at end of file
+<div element="book" href="#d0e2" number="" lang="en"><ttl>UIMA References</ttl><xreftext>UIMA References</xreftext><div element="chapter" href="#ugr.ref.javadocs" number="1" targetptr="ugr.ref.javadocs"><ttl>Javadocs</ttl><xreftext>Chapter 1, <i xmlns:xlink="http://www.w3.org/1999/xlink">Javadocs</i></xreftext></div><div element="chapter" href="#ugr.ref.xml.component_descriptor" number="2" targetptr="ugr.ref.xml.component_descriptor"><ttl>Component Descriptor Reference</ttl><xreftext>Chapter 2, <i xmlns:xlink="http://www.w3.org/1999/xlink">Component Descriptor Reference</i></xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.notation" number="2.1" targetptr="ugr.ref.xml.component_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 2.1, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.imports" number="2.2" targetptr="ugr.ref.xml.component_descriptor.imports"><ttl>Imports</ttl><xreftext>Sect
 ion 2.2, “Imports”</xreftext><obj element="para" href="#ugr.ref.xml.component_descriptor.datapath" number="" targetptr="ugr.ref.xml.component_descriptor.datapath"><ttl>???TITLE???</ttl><xreftext>Section 2.2, “Imports”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system" number="2.3" targetptr="ugr.ref.xml.component_descriptor.type_system"><ttl>Type System Descriptors</ttl><xreftext>Section 2.3, “Type System Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.imports" number="2.3.1" targetptr="ugr.ref.xml.component_descriptor.type_system.imports"><ttl>Imports</ttl><xreftext>Section 2.3.1, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.types" number="2.3.2" targetptr="ugr.ref.xml.component_descriptor.type_system.types"><ttl>Types</ttl><xreftext>Section 2.3.2, “Types”</xr
 eftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.features" number="2.3.3" targetptr="ugr.ref.xml.component_descriptor.type_system.features"><ttl>Features</ttl><xreftext>Section 2.3.3, “Features”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.type_system.string_subtypes" number="2.3.4" targetptr="ugr.ref.xml.component_descriptor.type_system.string_subtypes"><ttl>String Subtypes</ttl><xreftext>Section 2.3.4, “String Subtypes”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes" number="2.4" targetptr="ugr.ref.xml.component_descriptor.aes"><ttl>Analysis Engine Descriptors</ttl><xreftext>Section 2.4, “Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive" number="2.4.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive"><ttl>Primitive Analysis Engine Descriptors</tt
 l><xreftext>Section 2.4.1, “Primitive Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.basic" number="2.4.1.1" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.basic"><ttl>Basic Structure</ttl><xreftext>Section 2.4.1.1, “Basic Structure”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.metadata" number="2.4.1.2" targetptr="ugr.ref.xml.component_descriptor.aes.metadata"><ttl>Analysis Engine MetaData</ttl><xreftext>Section 2.4.1.2, “Analysis Engine MetaData”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration" number="2.4.1.3" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration"><ttl>Configuration Parameter Declaration</ttl><xreftext>Section 2.4.1.3, “Configuration Parameter Declaration”</xreftext><div element="section" 
 href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_declaration.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings" number="2.4.1.4" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings"><ttl>Configuration Parameter Settings</ttl><xreftext>Section 2.4.1.4, “Configuration Parameter Settings”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example" number="" targetptr="ugr.ref.xml.component_descriptor.aes.configuration_parameter_settings.example"><ttl>Example</ttl><xreftext>the section called “Example”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_system" nu
 mber="2.4.1.5" targetptr="ugr.ref.xml.component_descriptor.aes.type_system"><ttl>Type System Definition</ttl><xreftext>Section 2.4.1.5, “Type System Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.type_priority" number="2.4.1.6" targetptr="ugr.ref.xml.component_descriptor.aes.type_priority"><ttl>Type Priority Definition</ttl><xreftext>Section 2.4.1.6, “Type Priority Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.index" number="2.4.1.7" targetptr="ugr.ref.xml.component_descriptor.aes.index"><ttl>Index Definition</ttl><xreftext>Section 2.4.1.7, “Index Definition”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.capabilities" number="2.4.1.8" targetptr="ugr.ref.xml.component_descriptor.aes.capabilities"><ttl>Capabilities</ttl><xreftext>Section 2.4.1.8, “Capabilities”</xreftext></div><div element="sec
 tion" href="#ugr.ref.xml.component_descriptor.aes.operational_properties" number="2.4.1.9" targetptr="ugr.ref.xml.component_descriptor.aes.operational_properties"><ttl>OperationalProperties</ttl><xreftext>Section 2.4.1.9, “OperationalProperties”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies" number="2.4.1.10" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.external_resource_dependencies"><ttl>External Resource Dependencies</ttl><xreftext>Section 2.4.1.10, “External Resource Dependencies”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration" number="2.4.1.11" targetptr="ugr.ref.xml.component_descriptor.aes.primitive.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 2.4.1.11, “Resource Manager Configuration”</xreftext></div><div element="sect
 ion" href="#ugr.ref.xml.component_descriptor.aes.environment_variable_references" number="2.4.1.12" targetptr="ugr.ref.xml.component_descriptor.aes.environment_variable_references"><ttl>Environment Variable References</ttl><xreftext>Section 2.4.1.12, “Environment Variable References”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate" number="2.4.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate"><ttl>Aggregate Analysis Engine Descriptors</ttl><xreftext>Section 2.4.2, “Aggregate Analysis Engine Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.delegates" number="2.4.2.1" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.delegates"><ttl>Delegate Analysis Engine Specifiers</ttl><xreftext>Section 2.4.2.1, “Delegate Analysis Engine Specifiers”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.
 aggregate.flow_controller" number="2.4.2.2" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_controller"><ttl>FlowController</ttl><xreftext>Section 2.4.2.2, “FlowController”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints" number="2.4.2.3" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints"><ttl>FlowConstraints</ttl><xreftext>Section 2.4.2.3, “FlowConstraints”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.fixed_flow"><ttl>Fixed Flow</ttl><xreftext>the section called “Fixed Flow”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.flow_constraints.capability_language_flow" number="" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.flow_const
 raints.capability_language_flow"><ttl>Capability Language Flow</ttl><xreftext>the section called “Capability Language Flow”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides" number="2.4.2.4" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.configuration_parameter_overrides"><ttl>Configuration Parameter Overrides</ttl><xreftext>Section 2.4.2.4, “Configuration Parameter Overrides”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings" number="2.4.2.5" targetptr="ugr.ref.xml.component_descriptor.aes.aggregate.external_resource_bindings"><ttl>External Resource Bindings</ttl><xreftext>Section 2.4.2.5, “External Resource Bindings”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.aes.aggregate.sofa_mappings" number="2.4.2.6" targetptr="ugr.ref.xml.component_des
 criptor.aes.aggregate.sofa_mappings"><ttl>Sofa Mappings</ttl><xreftext>Section 2.4.2.6, “Sofa Mappings”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.flow_controller" number="2.5" targetptr="ugr.ref.xml.component_descriptor.flow_controller"><ttl>Flow Controller Descriptors</ttl><xreftext>Section 2.5, “Flow Controller Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts" number="2.6" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts"><ttl>Collection Processing Component Descriptors</ttl><xreftext>Section 2.6, “Collection Processing Component Descriptors”</xreftext><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader" number="2.6.1" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.collection_reader"><ttl>Collection Reader Descrip
 tors</ttl><xreftext>Section 2.6.1, “Collection Reader Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer" number="2.6.2" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_initializer"><ttl>CAS Initializer Descriptors (deprecated)</ttl><xreftext>Section 2.6.2, “CAS Initializer Descriptors (deprecated)”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer" number="2.6.3" targetptr="ugr.ref.xml.component_descriptor.collection_processing_parts.cas_consumer"><ttl>CAS Consumer Descriptors</ttl><xreftext>Section 2.6.3, “CAS Consumer Descriptors”</xreftext></div></div><div element="section" href="#ugr.ref.xml.component_descriptor.service_client" number="2.7" targetptr="ugr.ref.xml.component_descriptor.service_client"><ttl>Service Client Descriptors</ttl><xreftext>Sectio
 n 2.7, “Service Client Descriptors”</xreftext></div><div element="section" href="#ugr.ref.xml.component_descriptor.custom_resource_specifiers" number="2.8" targetptr="ugr.ref.xml.component_descriptor.custom_resource_specifiers"><ttl>Custom Resource Specifiers</ttl><xreftext>Section 2.8, “Custom Resource Specifiers”</xreftext></div></div><div element="chapter" href="#ugr.ref.xml.cpe_descriptor" number="3" targetptr="ugr.ref.xml.cpe_descriptor"><ttl>Collection Processing Engine Descriptor Reference</ttl><xreftext>Chapter 3, <i xmlns:xlink="http://www.w3.org/1999/xlink">Collection Processing Engine Descriptor Reference</i></xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.overview" number="3.1" targetptr="ugr.ref.xml.cpe_descriptor.overview"><ttl>CPE Overview</ttl><xreftext>Section 3.1, “CPE Overview”</xreftext><obj element="figure" href="#ugr.ref.xml.cpe_descriptor.overview.fig.runtime" number="3.1" targetptr="ugr.ref.
 xml.cpe_descriptor.overview.fig.runtime"><ttl>CPE Runtime Overview</ttl><xreftext>Figure 3.1, “CPE Runtime Overview”</xreftext></obj></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.notation" number="3.2" targetptr="ugr.ref.xml.cpe_descriptor.notation"><ttl>Notation</ttl><xreftext>Section 3.2, “Notation”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.imports" number="3.3" targetptr="ugr.ref.xml.cpe_descriptor.imports"><ttl>Imports</ttl><xreftext>Section 3.3, “Imports”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor" number="3.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor"><ttl>CPE Descriptor Overview</ttl><xreftext>Section 3.4, “CPE Descriptor Overview”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader" number="3.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader"><ttl>Coll
 ection Reader</ttl><xreftext>Section 3.5, “Collection Reader”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling" number="3.5.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.collection_reader.error_handling"><ttl>Error handling for Collection Readers</ttl><xreftext>Section 3.5.1, “Error handling for Collection Readers”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors" number="3.6" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors"><ttl>CAS Processors</ttl><xreftext>Section 3.6, “CAS Processors”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual" number="3.6.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual"><ttl>Specifying an Individual CAS Processor</ttl><xreftext>Section 3.6.1, “Specifying an Individual CAS Processo
 r”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor" number="3.6.1.1" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.descriptor"><ttl>&lt;descriptor&gt; Element</ttl><xreftext>Section 3.6.1.1, “&lt;descriptor&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings" number="3.6.1.2" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.configuration_parameter_settings"><ttl>&lt;configurationParameterSettings&gt; Element</ttl><xreftext>Section 3.6.1.2, “&lt;configurationParameterSettings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mappings" number="3.6.1.3" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.sofa_name_mapping
 s"><ttl>&lt;sofaNameMappings&gt; Element</ttl><xreftext>Section 3.6.1.3, “&lt;sofaNameMappings&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process" number="3.6.1.4" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.run_in_separate_process"><ttl>&lt;runInSeparateProcess&gt; Element</ttl><xreftext>Section 3.6.1.4, “&lt;runInSeparateProcess&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters" number="3.6.1.5" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.deployment_parameters"><ttl>&lt;deploymentParameters&gt; Element</ttl><xreftext>Section 3.6.1.5, “&lt;deploymentParameters&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter" number="3.6.1.6" tar
 getptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.filter"><ttl>&lt;filter&gt; Element</ttl><xreftext>Section 3.6.1.6, “&lt;filter&gt; Element”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling" number="3.6.1.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling"><ttl>&lt;errorHandling&gt; Element</ttl><xreftext>Section 3.6.1.7, “&lt;errorHandling&gt; Element”</xreftext><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action" number="" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.error_handling.timeout_retry_action"><ttl>Retry action taken on a timeout</ttl><xreftext>the section called “Retry action taken on a timeout”</xreftext></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descript
 or.cas_processors.individual.checkpoint" number="3.6.1.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.cas_processors.individual.checkpoint"><ttl>&lt;checkpoint&gt; Element</ttl><xreftext>Section 3.6.1.8, “&lt;checkpoint&gt; Element”</xreftext></div></div></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters" number="3.7" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.operational_parameters"><ttl>CPE Operational Parameters</ttl><xreftext>Section 3.7, “CPE Operational Parameters”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration" number="3.8" targetptr="ugr.ref.xml.cpe_descriptor.descriptor.resource_manager_configuration"><ttl>Resource Manager Configuration</ttl><xreftext>Section 3.8, “Resource Manager Configuration”</xreftext></div><div element="section" href="#ugr.ref.xml.cpe_descriptor.descriptor.example" number="3.9" targ
 etptr="ugr.ref.xml.cpe_descriptor.descriptor.example"><ttl>Example CPE Descriptor</ttl><xreftext>Section 3.9, “Example CPE Descriptor”</xreftext></div></div><div element="chapter" href="#ugr.ref.cas" number="4" targetptr="ugr.ref.cas"><ttl>CAS Reference</ttl><xreftext>Chapter 4, <i xmlns:xlink="http://www.w3.org/1999/xlink">CAS Reference</i></xreftext><div element="section" href="#ugr.ref.cas.javadocs" number="4.1" targetptr="ugr.ref.cas.javadocs"><ttl>JavaDocs</ttl><xreftext>Section 4.1, “JavaDocs”</xreftext></div><div element="section" href="#ugr.ref.cas.overview" number="4.2" targetptr="ugr.ref.cas.overview"><ttl>CAS Overview</ttl><xreftext>Section 4.2, “CAS Overview”</xreftext><div element="section" href="#ugr.ref.cas.type_system" number="4.2.1" targetptr="ugr.ref.cas.type_system"><ttl>The Type System</ttl><xreftext>Section 4.2.1, “The Type System”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_ac
 cessing_manipulating_data" number="4.2.2" targetptr="ugr.ref.cas.creating_accessing_manipulating_data"><ttl>Creating, accessing and manipulating data</ttl><xreftext>Section 4.2.2, “Creating/Accessing/Changing data”</xreftext></div><div element="section" href="#ugr.ref.cas.creating_using_indexes" number="4.2.3" targetptr="ugr.ref.cas.creating_using_indexes"><ttl>Creating and using indexes</ttl><xreftext>Section 4.2.3, “Creating and using indexes”</xreftext></div></div><div element="section" href="#ugr.ref.cas.builtin_types" number="4.3" targetptr="ugr.ref.cas.builtin_types"><ttl>Built-in CAS Types</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext><obj element="para" href="#ugr.ref.cas.document_annotation" number="" targetptr="ugr.ref.cas.document_annotation"><ttl>???TITLE???</ttl><xreftext>Section 4.3, “Built-in CAS Types”</xreftext></obj></div><div element="section" href="#ugr.ref.cas.accessing_the_type_system" num
 ber="4.4" targetptr="ugr.ref.cas.accessing_the_type_system"><ttl>Accessing the type system</ttl><xreftext>Section 4.4, “Accessing the type system”</xreftext><div element="section" href="#ugr.ref.cas.type_system.printer_example" number="4.4.1" targetptr="ugr.ref.cas.type_system.printer_example"><ttl>TypeSystemPrinter example</ttl><xreftext>Section 4.4.1, “TypeSystemPrinter example”</xreftext></div><div element="section" href="#ugr.ref.cas.cas_apis_create_modify_feature_structures" number="4.4.2" targetptr="ugr.ref.cas.cas_apis_create_modify_feature_structures"><ttl>Using the CAS APIs to create and modify feature structures</ttl><xreftext>Section 4.4.2, “Using CAS APIs: Feature Structures”</xreftext></div></div><div element="section" href="#ugr.ref.cas.creating_feature_structures" number="4.5" targetptr="ugr.ref.cas.creating_feature_structures"><ttl>Creating feature structures</ttl><xreftext>Section 4.5, “Creating feature structur
 es”</xreftext></div><div element="section" href="#ugr.ref.cas.accessing_modifying_features_of_feature_structures" number="4.6" targetptr="ugr.ref.cas.accessing_modifying_features_of_feature_structures"><ttl>Accessing or modifying features of feature structures</ttl><xreftext>Section 4.6, “Accessing or modifying Features”</xreftext></div><div element="section" href="#ugr.ref.cas.indexes_and_iterators" number="4.7" targetptr="ugr.ref.cas.indexes_and_iterators"><ttl>Indexes and Iterators</ttl><xreftext>Section 4.7, “Indexes and Iterators”</xreftext><div element="section" href="#ugr.ref.cas.index.built_in_indexes" number="4.7.1" targetptr="ugr.ref.cas.index.built_in_indexes"><ttl>Built-in Indexes</ttl><xreftext>Section 4.7.1, “Built-in Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.adding_to_indexes" number="4.7.2" targetptr="ugr.ref.cas.index.adding_to_indexes"><ttl>Adding Feature Structures to the Indexes</t
 tl><xreftext>Section 4.7.2, “Adding Feature Structures to the Indexes”</xreftext></div><div element="section" href="#ugr.ref.cas.index.iterators" number="4.7.3" targetptr="ugr.ref.cas.index.iterators"><ttl>Iterators</ttl><xreftext>Section 4.7.3, “Iterators”</xreftext></div><div element="section" href="#ugr.ref.cas.index.annotation_index" number="4.7.4" targetptr="ugr.ref.cas.index.annotation_index"><ttl>Special iterators for Annotation types</ttl><xreftext>Section 4.7.4, “Special iterators for Annotation types”</xreftext></div><div element="section" href="#ugr.ref.cas.index.constraints_and_filtered_iterators" number="4.7.5" targetptr="ugr.ref.cas.index.constraints_and_filtered_iterators"><ttl>Constraints and Filtered iterators</ttl><xreftext>Section 4.7.5, “Constraints and Filtered iterators”</xreftext></div></div><div element="section" href="#ugr.ref.cas.guide_to_javadocs" number="4.8" targetptr="ugr.ref.cas.guide_to_javad
 ocs"><ttl>The CAS API's – a guide to the JavaDocs</ttl><xreftext>Section 4.8, “CAS API's JavaDocs”</xreftext><div element="section" href="#ugr.ref.cas.javadocs.cas_package" number="4.8.1" targetptr="ugr.ref.cas.javadocs.cas_package"><ttl>APIs in the CAS package</ttl><xreftext>Section 4.8.1, “APIs in the CAS package”</xreftext><obj element="figure" href="#ugr.ref.cas.fig.api_hierarchy" number="4.1" targetptr="ugr.ref.cas.fig.api_hierarchy"><ttl>CAS Object hierarchy</ttl><xreftext>Figure 4.1, “CAS Object hierarchy”</xreftext></obj></div></div></div><div element="chapter" href="#ugr.ref.jcas" number="5" targetptr="ugr.ref.jcas"><ttl>JCas Reference</ttl><xreftext>Chapter 5, <i xmlns:xlink="http://www.w3.org/1999/xlink">JCas Reference</i></xreftext><div element="section" href="#ugr.ref.jcas.name_spaces" number="5.1" targetptr="ugr.ref.jcas.name_spaces"><ttl>Name Spaces</ttl><xreftext>Section 5.1, “Name Spaces”</xreftext>
 </div><div element="section" href="#ugr.ref.jcas.use_of_description" number="5.2" targetptr="ugr.ref.jcas.use_of_description"><ttl>The XML description element is copied into generated Java code</ttl><xreftext>Section 5.2, “Use of XML Description”</xreftext></div><div element="section" href="#ugr.ref.jcas.mapping_built_ins" number="5.3" targetptr="ugr.ref.jcas.mapping_built_ins"><ttl>Mapping built-in CAS types to Java types</ttl><xreftext>Section 5.3, “Mapping built-in CAS types to Java types”</xreftext></div><div element="section" href="#ugr.ref.jcas.augmenting_generated_code" number="5.4" targetptr="ugr.ref.jcas.augmenting_generated_code"><ttl>Augmenting the generated Java Code</ttl><xreftext>Section 5.4, “Augmenting the generated Java Code”</xreftext><div element="section" href="#ugr.ref.jcas.keeping_augmentations_when_regenerating" number="5.4.1" targetptr="ugr.ref.jcas.keeping_augmentations_when_regenerating"><ttl>Keeping hand-coded
  augmentations when regenerating</ttl><xreftext>Section 5.4.1, “Keeping hand-coded augmentations when regenerating”</xreftext></div><div element="section" href="#ugr.ref.jcas.additional_constructors" number="5.4.2" targetptr="ugr.ref.jcas.additional_constructors"><ttl>Additional Constructors</ttl><xreftext>Section 5.4.2, “Additional Constructors”</xreftext><div element="section" href="#ugr.ref.jcas.using_readobject" number="5.4.2.1" targetptr="ugr.ref.jcas.using_readobject"><ttl>Using readObject</ttl><xreftext>Section 5.4.2.1, “Using readObject”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.modifying_generated_items" number="5.4.3" targetptr="ugr.ref.jcas.modifying_generated_items"><ttl>Modifying generated items</ttl><xreftext>Section 5.4.3, “Modifying generated items”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.merging_types_from_other_specs" number="5.5" targetptr="ugr.ref.jcas.merg
 ing_types_from_other_specs"><ttl>Merging types from different type system specifications</ttl><xreftext>Section 5.5, “Merging Types”</xreftext><div element="section" href="#ugr.ref.jcas.merging_types.aggregates_and_cpes" number="5.5.1" targetptr="ugr.ref.jcas.merging_types.aggregates_and_cpes"><ttl>Aggregate AEs and CPEs as sources of types</ttl><xreftext>Section 5.5.1, “Aggregate AEs and CPEs as sources of types”</xreftext></div><div element="section" href="#ugr.ref.jcas.merging_types.jcasgen_support" number="5.5.2" targetptr="ugr.ref.jcas.merging_types.jcasgen_support"><ttl>JCasGen support for type merging</ttl><xreftext>Section 5.5.2, “JCasGen support for type merging”</xreftext></div><div element="section" href="#ugr.ref.jcas.impact_of_type_merging_on_composability" number="5.5.3" targetptr="ugr.ref.jcas.impact_of_type_merging_on_composability"><ttl>Impact of Type Merging on Composability of Annotators</ttl><xreftext>Section 5.5.
 3, “Type Merging impacts on Composability”</xreftext></div><div element="section" href="#ugr.ref.jcas.documentannotation_issues" number="5.5.4" targetptr="ugr.ref.jcas.documentannotation_issues"><ttl>Adding Features to DocumentAnnotation</ttl><xreftext>Section 5.5.4, “Adding Features to DocumentAnnotation”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.using_within_an_annotator" number="5.6" targetptr="ugr.ref.jcas.using_within_an_annotator"><ttl>Using JCas within an Annotator</ttl><xreftext>Section 5.6, “Using JCas within an Annotator”</xreftext><div element="section" href="#ugr.ref.jcas.new_instances" number="5.6.1" targetptr="ugr.ref.jcas.new_instances"><ttl>Creating new instances using the Java “<span class="quote">new</span>” operator</ttl><xreftext>Section 5.6.1, “Creating new instances”</xreftext></div><div element="section" href="#ugr.ref.jcas.getters_and_setters" number="5.6.2" targetptr="u
 gr.ref.jcas.getters_and_setters"><ttl>Getters and Setters</ttl><xreftext>Section 5.6.2, “Getters and Setters”</xreftext></div><div element="section" href="#ugr.ref.jcas.obtaining_refs_to_indexes" number="5.6.3" targetptr="ugr.ref.jcas.obtaining_refs_to_indexes"><ttl>Obtaining references to Indexes</ttl><xreftext>Section 5.6.3, “Obtaining references to Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.adding_removing_instances_to_indexes" number="5.6.4" targetptr="ugr.ref.jcas.adding_removing_instances_to_indexes"><ttl>Adding (and removing) instances to (from) indexes</ttl><xreftext>Section 5.6.4, “Updating Indexes”</xreftext></div><div element="section" href="#ugr.ref.jcas.using_iterators" number="5.6.5" targetptr="ugr.ref.jcas.using_iterators"><ttl>Using Iterators</ttl><xreftext>Section 5.6.5, “Using Iterators”</xreftext></div><div element="section" href="#ugr.ref.jcas.class_loaders" number="5.6.6" target
 ptr="ugr.ref.jcas.class_loaders"><ttl>Class Loaders in UIMA</ttl><xreftext>Section 5.6.6, “Class Loaders in UIMA”</xreftext><div element="section" href="#ugr.ref.jcas.class_loaders.optional" number="5.6.6.1" targetptr="ugr.ref.jcas.class_loaders.optional"><ttl>Use of Class Loaders is optional</ttl><xreftext>Section 5.6.6.1, “Use of Class Loaders is optional”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.accessing_jcas_objects_outside_uima_components" number="5.6.7" targetptr="ugr.ref.jcas.accessing_jcas_objects_outside_uima_components"><ttl>Issues accessing JCas objects outside of UIMA Engine Components</ttl><xreftext>Section 5.6.7, “Issues accessing JCas objects outside of UIMA Engine Components”</xreftext></div></div><div element="section" href="#ugr.ref.jcas.setting_up_classpath" number="5.7" targetptr="ugr.ref.jcas.setting_up_classpath"><ttl>Setting up Classpath for JCas</ttl><xreftext>Section 5.7, “Settin
 g up Classpath for JCas”</xreftext></div></div><div element="chapter" href="#ugr.ref.pear" number="6" targetptr="ugr.ref.pear"><ttl>PEAR Reference</ttl><xreftext>Chapter 6, <i xmlns:xlink="http://www.w3.org/1999/xlink">PEAR Reference</i></xreftext><div element="section" href="#ugr.ref.pear.packaging_a_component" number="6.1" targetptr="ugr.ref.pear.packaging_a_component"><ttl>Packaging a UIMA component</ttl><xreftext>Section 6.1, “Packaging a UIMA component”</xreftext><div element="section" href="#ugr.ref.pear.creating_pear_structure" number="6.1.1" targetptr="ugr.ref.pear.creating_pear_structure"><ttl>Creating the PEAR structure</ttl><xreftext>Section 6.1.1, “Creating the PEAR structure”</xreftext><obj element="figure" href="#ugr.ref.pear.fig.pear_structure" number="6.1" targetptr="ugr.ref.pear.fig.pear_structure"><ttl>The PEAR Structure</ttl><xreftext>Figure 6.1, “The PEAR Structure”</xreftext></obj></div><div element="section
 " href="#ugr.ref.pear.populating_pear_structure" number="6.1.2" targetptr="ugr.ref.pear.populating_pear_structure"><ttl>Populating the PEAR structure</ttl><xreftext>Section 6.1.2, “Populating the PEAR structure”</xreftext><div element="section" href="#ugr.ref.pear.package_type.standard" number="6.1.2.1" targetptr="ugr.ref.pear.package_type.standard"><ttl>Standard Type</ttl><xreftext>Section 6.1.2.1, “Standard Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.service" number="6.1.2.2" targetptr="ugr.ref.pear.package_type.service"><ttl>Service Type</ttl><xreftext>Section 6.1.2.2, “Service Type”</xreftext></div><div element="section" href="#ugr.ref.pear.package_type.network" number="6.1.2.3" targetptr="ugr.ref.pear.package_type.network"><ttl>Network Type</ttl><xreftext>Section 6.1.2.3, “Network Type”</xreftext></div></div><div element="section" href="#ugr.ref.pear.creating_installation_descriptor" n
 umber="6.1.3" targetptr="ugr.ref.pear.creating_installation_descriptor"><ttl>Creating the installation descriptor</ttl><xreftext>Section 6.1.3, “Creating the installation descriptor”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor" number="6.1.4" targetptr="ugr.ref.pear.installation_descriptor"><ttl>Documented template for the installation descriptor:</ttl><xreftext>Section 6.1.4, “Installation Descriptor: template”</xreftext><div element="section" href="#ugr.ref.pear.installation_descriptor.submitted_component" number="6.1.4.1" targetptr="ugr.ref.pear.installation_descriptor.submitted_component"><ttl>The SUBMITTED_COMPONENT section</ttl><xreftext>Section 6.1.4.1, “The SUBMITTED_COMPONENT section”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.id_name_desc" number="6.1.4.2" targetptr="ugr.ref.pear.installation_descriptor.id_name_desc"><ttl>The ID, NAME, and DESC tags
 </ttl><xreftext>Section 6.1.4.2, “The ID, NAME, and DESC tags”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type" number="6.1.4.3" targetptr="ugr.ref.pear.installation_descriptor.deployment_type"><ttl>Tags related to deployment types</ttl><xreftext>Section 6.1.4.3, “Tags related to deployment types”</xreftext><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.standard" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.standard"><ttl>Standard Type</ttl><xreftext>the section called “Standard Type”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.deployment_type.service" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.service"><ttl>Service Type</ttl><xreftext>the section called “Service Type”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descrip
 tor.deployment_type.network" number="" targetptr="ugr.ref.pear.installation_descriptor.deployment_type.network"><ttl>Network Type</ttl><xreftext>the section called “Network Type”</xreftext></div></div><div element="section" href="#ugr.ref.pear.installation_descriptor.collection_reader_cas_consumer" number="6.1.4.4" targetptr="ugr.ref.pear.installation_descriptor.collection_reader_cas_consumer"><ttl>The Collection Reader and CAS Consumer tags</ttl><xreftext>Section 6.1.4.4, “The Collection Reader and CAS Consumer tags”</xreftext></div><div element="section" href="#ugr.ref.pear.installation_descriptor.installation" number="6.1.4.5" targetptr="ugr.ref.pear.installation_descriptor.installation"><ttl>The INSTALLATION section</ttl><xreftext>Section 6.1.4.5, “The INSTALLATION section”</xreftext></div></div><div element="section" href="#ugr.ref.pear.packaging_into_1_file" number="6.1.5" targetptr="ugr.ref.pear.packaging_into_1_file"><ttl>Packaging
  the PEAR structure into one file</ttl><xreftext>Section 6.1.5, “Packaging the PEAR structure into one file”</xreftext></div></div><div element="section" href="#ugr.ref.pear.installing" number="6.2" targetptr="ugr.ref.pear.installing"><ttl>Installing a PEAR package</ttl><xreftext>Section 6.2, “Installing a PEAR package”</xreftext><div element="section" href="#ugr.ref.pear.installing_pear_using_API" number="6.2.1" targetptr="ugr.ref.pear.installing_pear_using_API"><ttl>Installing a PEAR file using the PEAR APIs</ttl><xreftext>Section 6.2.1, “Installing a PEAR file using the PEAR APIs”</xreftext></div></div></div><div element="chapter" href="#ugr.ref.xmi" number="7" targetptr="ugr.ref.xmi"><ttl>XMI CAS Serialization Reference</ttl><xreftext>Chapter 7, <i xmlns:xlink="http://www.w3.org/1999/xlink">XMI CAS Serialization Reference</i></xreftext><div element="section" href="#ugr.ref.xmi.xmi_tag" number="7.1" targetptr="ugr.ref.xmi.xmi_tag"
 ><ttl>XMI Tag</ttl><xreftext>Section 7.1, “XMI Tag”</xreftext></div><div element="section" href="#ugr.ref.xmi.feature_structures" number="7.2" targetptr="ugr.ref.xmi.feature_structures"><ttl>Feature Structures</ttl><xreftext>Section 7.2, “Feature Structures”</xreftext></div><div element="section" href="#ugr.ref.xmi.primitive_features" number="7.3" targetptr="ugr.ref.xmi.primitive_features"><ttl>Primitive Features</ttl><xreftext>Section 7.3, “Primitive Features”</xreftext></div><div element="section" href="#ugr.ref.xmi.reference_features" number="7.4" targetptr="ugr.ref.xmi.reference_features"><ttl>Reference Features</ttl><xreftext>Section 7.4, “Reference Features”</xreftext></div><div element="section" href="#ugr.ref.xmi.array_and_list_features" number="7.5" targetptr="ugr.ref.xmi.array_and_list_features"><ttl>Array and List Features</ttl><xreftext>Section 7.5, “Array and List Features”</xreftext><div element="
 section" href="#ugr.ref.xmi.array_and_list_features.as_multi_valued_properties" number="7.5.1" targetptr="ugr.ref.xmi.array_and_list_features.as_multi_valued_properties"><ttl>Arrays and Lists as Multi-Valued Properties</ttl><xreftext>Section 7.5.1, “Arrays and Lists as Multi-Valued Properties”</xreftext></div><div element="section" href="#ugr.ref.xmi.array_and_list_features.as_1st_class_objects" number="7.5.2" targetptr="ugr.ref.xmi.array_and_list_features.as_1st_class_objects"><ttl>Arrays and Lists as First-Class Objects</ttl><xreftext>Section 7.5.2, “Arrays and Lists as First-Class Objects”</xreftext></div><div element="section" href="#ugr.ref.xmi.null_array_list_elements" number="7.5.3" targetptr="ugr.ref.xmi.null_array_list_elements"><ttl>Null Array/List Elements</ttl><xreftext>Section 7.5.3, “Null Array/List Elements”</xreftext></div></div><div element="section" href="#ugr.ref.xmi.sofas_views" number="7.6" targetptr="ugr.ref.xmi.so
 fas_views"><ttl>Subjects of Analysis (Sofas) and Views</ttl><xreftext>Section 7.6, “Subjects of Analysis (Sofas) and Views”</xreftext></div><div element="section" href="#ugr.ref.xmi.linking_to_ecore_type_system" number="7.7" targetptr="ugr.ref.xmi.linking_to_ecore_type_system"><ttl>Linking an XMI Document to its Ecore Type System</ttl><xreftext>Section 7.7, “Linking XMI docs to Ecore Type System”</xreftext></div></div></div>
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