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Posted to issues@airavata.apache.org by "Eroma (JIRA)" <ji...@apache.org> on 2015/06/04 11:17:38 UTC
[jira] [Updated] (AIRAVATA-1712) Experiments on BR2 fails during
creating scratch directory in gw111
[ https://issues.apache.org/jira/browse/AIRAVATA-1712?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eroma updated AIRAVATA-1712:
----------------------------
Summary: Experiments on BR2 fails during creating scratch directory in gw111 (was: Experiments on BR2 fails during creating scratch directory in w111)
> Experiments on BR2 fails during creating scratch directory in gw111
> -------------------------------------------------------------------
>
> Key: AIRAVATA-1712
> URL: https://issues.apache.org/jira/browse/AIRAVATA-1712
> Project: Airavata
> Issue Type: Bug
> Affects Versions: 0.16
> Environment: http://dev.test-drive.airavata.org/portal/pga/public/
> Reporter: Eroma
>
> Created and launched multiple experiments (Amber_Sander, Echo and AutoDock) on BR2.
> Experiment failed with exp state = FAILED and No job status.
> Error message displayed in PGA
> org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during creating directory :/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4 to remote file bigred2.uits.iu.edu:rFile at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581) at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83) at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: mkdir: cannot create directory `/N/dc2/scratch': Permission denied at org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554) ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:450) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:692) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437) ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:859) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635) ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:848) ... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during creating directory :/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4 to remote file bigred2.uits.iu.edu:rFile at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581) at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83) at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844) ... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: mkdir: cannot create directory `/N/dc2/scratch': Permission denied at org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554) ... 10
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