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Posted to issues@ignite.apache.org by "ASF GitHub Bot (JIRA)" <ji...@apache.org> on 2016/12/05 13:06:58 UTC
[jira] [Commented] (IGNITE-4355) Hadoop: Eliminate map threads
pauses during startup
[ https://issues.apache.org/jira/browse/IGNITE-4355?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15722224#comment-15722224 ]
ASF GitHub Bot commented on IGNITE-4355:
----------------------------------------
GitHub user devozerov opened a pull request:
https://github.com/apache/ignite/pull/1313
IGNITE-4355
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/gridgain/apache-ignite ignite-4355-1
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/ignite/pull/1313.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #1313
----
commit abe6a6b679bf728648c30c30de745b2c3e446f6f
Author: devozerov <vo...@gridgain.com>
Date: 2016-12-05T13:05:32Z
Done.
----
> Hadoop: Eliminate map threads pauses during startup
> ---------------------------------------------------
>
> Key: IGNITE-4355
> URL: https://issues.apache.org/jira/browse/IGNITE-4355
> Project: Ignite
> Issue Type: Sub-task
> Components: hadoop
> Reporter: Ivan Veselovsky
> Assignee: Vladimir Ozerov
> Fix For: 2.0
>
>
> Pauses in all Map threads but one are observed in the beginning . This is caused by waiting on future.get() in HadoopV2Job.getTaskContext(HadoopTaskInfo) .
> {code}
> at sun.misc.Unsafe.park(boolean, long)
> at java.util.concurrent.locks.LockSupport.park(Object)
> at java.util.concurrent.locks.AbstractQueuedSynchronizer.parkAndCheckInterrupt()
> at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedInterruptibly(int)
> at java.util.concurrent.locks.AbstractQueuedSynchronizer.acquireSharedInterruptibly(int)
> at org.apache.ignite.internal.util.future.GridFutureAdapter.get0(boolean)
> at org.apache.ignite.internal.util.future.GridFutureAdapter.get()
> at org.apache.ignite.internal.processors.hadoop.impl.v2.HadoopV2Job.getTaskContext(HadoopTaskInfo)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffleJob.<init>(Object, IgniteLogger, HadoopJob, GridUnsafeMemory, int, int[], int)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.newJob(HadoopJobId)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.job(HadoopJobId)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.output(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopEmbeddedTaskExecutor$1.createOutput(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.createOutputInternal(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.runTask(HadoopPerformanceCounter)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call0()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask$1.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask$1.call()
> at org.apache.ignite.internal.processors.hadoop.impl.v2.HadoopV2TaskContext.runAsJobOwner(Callable)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopExecutorService$2.body()
> at org.apache.ignite.internal.util.worker.GridWorker.run()
> at java.lang.Thread.run()
> {code}
> while the working thread initializes the context:
> {code}
> Java Monitor Wait
> at java.lang.Object.wait(long)
> at java.lang.Thread.join(long)
> at java.lang.Thread.join()
> at org.apache.hadoop.util.Shell.joinThread(Thread)
> at org.apache.hadoop.util.Shell.runCommand()
> at org.apache.hadoop.util.Shell.run()
> at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute()
> at org.apache.hadoop.util.Shell.isSetsidSupported()
> at org.apache.hadoop.util.Shell.<clinit>()
> at org.apache.hadoop.util.StringUtils.<clinit>()
> at org.apache.hadoop.security.SecurityUtil.getAuthenticationMethod(Configuration)
> at org.apache.hadoop.security.UserGroupInformation.initialize(Configuration, boolean)
> at org.apache.hadoop.security.UserGroupInformation.ensureInitialized()
> at org.apache.hadoop.security.UserGroupInformation.loginUserFromSubject(Subject)
> at org.apache.hadoop.security.UserGroupInformation.getLoginUser()
> at org.apache.hadoop.security.UserGroupInformation.getCurrentUser()
> at org.apache.hadoop.mapreduce.task.JobContextImpl.<init>(Configuration, JobID)
> at org.apache.hadoop.mapred.JobContextImpl.<init>(JobConf, JobID, Progressable)
> at org.apache.hadoop.mapred.JobContextImpl.<init>(JobConf, JobID)
> at org.apache.ignite.internal.processors.hadoop.impl.v2.HadoopV2TaskContext.<init>(HadoopTaskInfo, HadoopJob, HadoopJobId, UUID, DataInput)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Constructor, Object[])
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(Object[])
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Object[])
> at java.lang.reflect.Constructor.newInstance(Object[])
> at org.apache.ignite.internal.processors.hadoop.impl.v2.HadoopV2Job.getTaskContext(HadoopTaskInfo)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffleJob.<init>(Object, IgniteLogger, HadoopJob, GridUnsafeMemory, int, int[], int)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.newJob(HadoopJobId)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.job(HadoopJobId)
> at org.apache.ignite.internal.processors.hadoop.shuffle.HadoopShuffle.output(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopEmbeddedTaskExecutor$1.createOutput(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.createOutputInternal(HadoopTaskContext)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.runTask(HadoopPerformanceCounter)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call0()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask$1.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask$1.call()
> at org.apache.ignite.internal.processors.hadoop.impl.v2.HadoopV2TaskContext.runAsJobOwner(Callable)
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopRunnableTask.call()
> at org.apache.ignite.internal.processors.hadoop.taskexecutor.HadoopExecutorService$2.body()
> at org.apache.ignite.internal.util.worker.GridWorker.run()
> at java.lang.Thread.run()
> {code}
> Experimental solution can be found in branch "ignite-4270-sync-direct-gzip-avoid-setup-pauses". 2 changes are made there:
> 1) HadoopShuffle.job() avoided "speculative execution"
> 2) task contexts creation paralleled in HadoopShuffleJob.<init>().
> JFR profiles show that there are no pauses any more, however, there is stil a lot of work done in each thread loading classes, parsing XML configs, and initializing Hadoop statics (in case of UserGroupInformation.getCurrentUser() this even involves a shell script execution).
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