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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/10/15 01:26:32 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #875
See <https://builds.apache.org/job/ctakes-trunk-compiletest/875/changes>
Changes:
[seanfinan] Adding ProcessDir.piper
Refactoring
[seanfinan] Adding ctakes-examples-res with sample notes
Copy notes to resources/ directory for binary build
[seanfinan] FilesInDirectoryCollectionReader now uses FileLocator to access resources in source
Adding Example that reads files from a directory using PipelineBuilder
moved ctakes-examples/data/ to a ctakes-examples-res module
Added all other sample notes in ctakes project to the ctakes-examples-res module
TODO refactor all test and sample code in ctakes to use ctakes-examples-res sample notes
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A ctakes-ytex-res/src/main/resources/org/apache/ctakes
AU ctakes-ytex-res/src/main/resources/org/apache/ctakes/ctakes_logo.jpg
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/jdl
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/jdl/xdl.xsd
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/beans-kernel-sim.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/simSvcBeanRefContext.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/model
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/model/NamedEntityRegex.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/model/SegmentRegex.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/model/Document.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beans-uima-dao.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beans-uima-mapper.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beans-uima.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/annotators
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/annotators/negex_triggers.txt
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools/docanalyzer
AU ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools/docanalyzer/icon.gif
AU ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools/docanalyzer/icon.psd
AU ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools/docanalyzer/logo.gif
AU ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/tools/docanalyzer/logo.psd
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex-umls.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/beans-kernel.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/dictionary
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/dictionary/lookup
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_SNOMED.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_stem_SNOMED.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/negex
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/negex/negex_triggers.txt
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/negex/negex_triggers_orig.txt
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex-default.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernelBeanRefContext.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/beans-kernel.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex.properties.orcl.example
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex.properties.mssql.example
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/conceptGraph
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/conceptGraph/sct-msh-csp-aod.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/conceptGraph/sct-umls.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/search.mysql.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/beans-kernel-simweb.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/search-msh.mysql.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/search-sct.mysql.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/beans-security.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/beans-ws.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/search.mssql.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/search.orcl.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/beans-web.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/web/messages.properties
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/beans-datasource.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/umls
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/umls/model
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/umls/model/FWord.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/umls/model/UMLS.hbm.template.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernel
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernel/ehcache.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernel/model
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernel/model/KernelEvaluation.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/kernel/model/ClassifierEvaluation.hbm.xml
A ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/ytex.properties.mysql.example
A ctakes-ytex-res/src/main/resources/ehcache.xml
A ctakes-ytex-res/src/test
A ctakes-ytex-res/src/test/resources
A ctakes-ytex-res/src/test/resources/org
A ctakes-ytex-res/src/test/resources/org/apache
A ctakes-ytex-res/src/test/resources/org/apache/ctakes
A ctakes-ytex-res/src/test/resources/org/apache/ctakes/ytex
A ctakes-ytex-res/src/test/resources/org/apache/ctakes/ytex/dictionary
A ctakes-ytex-res/src/test/resources/org/apache/ctakes/ytex/dictionary/lookup
A ctakes-ytex-res/pom.xml
A ctakes-clinical-pipeline
A ctakes-clinical-pipeline/LICENSE
A ctakes-clinical-pipeline/src
A ctakes-clinical-pipeline/src/main
A ctakes-clinical-pipeline/src/main/java
A ctakes-clinical-pipeline/src/main/java/org
A ctakes-clinical-pipeline/src/main/java/org/apache
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline
AU ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineWithUmls.java
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime
AU ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java
AU ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfCUIsGenerator.java
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java
A ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineFactory.java
A ctakes-clinical-pipeline/src/test
A ctakes-clinical-pipeline/src/test/data
A ctakes-clinical-pipeline/src/test/data/output
A ctakes-clinical-pipeline/src/test/data/output/NotesIIST_RTF.DTD
A ctakes-clinical-pipeline/src/test/data/output/testpatient_cn_1.xml.included.xml
A ctakes-clinical-pipeline/src/test/data/testpatient_cn_1.xml
A ctakes-clinical-pipeline/src/test/data/testpatient_cn_2.xml
A ctakes-clinical-pipeline/src/test/data/plaintext
A ctakes-clinical-pipeline/src/test/data/plaintext/testpatient_plaintext_1.txt
A ctakes-clinical-pipeline/src/test/data/plaintext/testpatient_plaintext_2.txt
A ctakes-clinical-pipeline/src/test/data/plaintext/sample_note_plaintext
A ctakes-clinical-pipeline/data
A ctakes-clinical-pipeline/data/input
A ctakes-clinical-pipeline/data/output
A ctakes-clinical-pipeline/pom.xml
A ctakes-clinical-pipeline/resources
A ctakes-clinical-pipeline/resources/launch
AU ctakes-clinical-pipeline/resources/launch/UIMA_CPE_GUI--clinical_documents_pipeline.launch
AU ctakes-clinical-pipeline/resources/launch/UIMA_CVD--clinical_documents_pipeline.launch
A ctakes-clinical-pipeline/SystemArchitectureOverview.txt
A ctakes-clinical-pipeline/README
A ctakes-clinical-pipeline/desc
A ctakes-clinical-pipeline/desc/analysis_engine
A ctakes-clinical-pipeline/desc/analysis_engine/auto
A ctakes-clinical-pipeline/desc/analysis_engine/auto/defaultPipeline.xml
A ctakes-clinical-pipeline/desc/analysis_engine/MaxLookupWindows.xml
A ctakes-clinical-pipeline/desc/analysis_engine/NegationAnnotator.xml
A ctakes-clinical-pipeline/desc/analysis_engine/ExtractionPrepAnnotator.xml
A ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaProcessor.xml
AU ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextFastUMLSProcessor.xml
A ctakes-clinical-pipeline/desc/analysis_engine/AggregateCdaUMLSProcessor.xml
A ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor.xml
A ctakes-clinical-pipeline/desc/analysis_engine/CuisOnlyPlaintextUMLSProcessor.xml
A ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml
A ctakes-clinical-pipeline/desc/analysis_engine/NP2LookupWindow.xml
A ctakes-clinical-pipeline/desc/analysis_engine/assertion_training_steps
A ctakes-clinical-pipeline/desc/analysis_engine/assertion_training_steps/AggregatePlaintextUMLSProcessor__no_dictionary_no_assertion.xml
A ctakes-clinical-pipeline/desc/analysis_engine/SimpleSegmentAnnotator.xml
A ctakes-clinical-pipeline/desc/analysis_engine/LookupWindowAnnotator.xml
A ctakes-clinical-pipeline/desc/collection_processing_engine
A ctakes-clinical-pipeline/desc/collection_processing_engine/test_plaintext.xml
A ctakes-clinical-pipeline/desc/collection_processing_engine/test1.xml
A ctakes-clinical-pipeline/desc/collection_processing_engine/assertion_training_steps
A ctakes-clinical-pipeline/desc/collection_processing_engine/assertion_training_steps/process_gold_assertion_data.xml
A ctakes-clinical-pipeline/desc/collection_processing_engine/test_cda.xml
A ctakes-constituency-parser
A ctakes-constituency-parser/conf
A ctakes-constituency-parser/doc
A ctakes-constituency-parser/scripts
A ctakes-constituency-parser/scripts/groovy
AU ctakes-constituency-parser/scripts/groovy/parser.groovy
A ctakes-constituency-parser/src
A ctakes-constituency-parser/src/main
A ctakes-constituency-parser/src/main/java
A ctakes-constituency-parser/src/main/java/org
A ctakes-constituency-parser/src/main/java/org/apache
A ctakes-constituency-parser/src/main/java/org/apache/ctakes
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ParserEvaluationAnnotator.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/MaxentParserWrapper.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/uima/co/ParserTreeWriterConsumer.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ParserWrapper.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/AnnotationTreeUtils.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/TreeUtils.java
AU ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/util/CommandLineParserUtil.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeExtractor.java
A ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/treekernel/TreeKernel.java
A ctakes-constituency-parser/src/main/resources
A ctakes-constituency-parser/src/main/resources/org
A ctakes-constituency-parser/src/main/resources/org/apache
A ctakes-constituency-parser/src/main/resources/org/apache/ctakes
A ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency
A ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser
A ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/types
A ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml
A ctakes-constituency-parser/data
A ctakes-constituency-parser/data/test
A ctakes-constituency-parser/data/test/testfakenote.txt
A ctakes-constituency-parser/data/test/output
A ctakes-constituency-parser/data/test/output/testfakenote.xml
A ctakes-constituency-parser/pom.xml
A ctakes-constituency-parser/resources
A ctakes-constituency-parser/resources/launch
AU ctakes-constituency-parser/resources/launch/UIMA_CPE--Constituency Parser.launch
AU ctakes-constituency-parser/resources/launch/UIMA_CVD--Constituency Parser.launch
A ctakes-constituency-parser/README
A ctakes-constituency-parser/desc
A ctakes-constituency-parser/desc/analysis_engine
A ctakes-constituency-parser/desc/analysis_engine/ParserEvaluatorAnnotator.xml
A ctakes-constituency-parser/desc/analysis_engine/AggregateParsingProcessor.xml
A ctakes-constituency-parser/desc/ConstituencyParserAnnotator.xml
A ctakes-constituency-parser/desc/collection_processing_engine
A ctakes-constituency-parser/desc/collection_processing_engine/ParsingCPE.xml
A ctakes-constituency-parser/desc/cas_consumer
A ctakes-constituency-parser/desc/cas_consumer/ParseTreeWriterConsumer.xml
A ctakes-constituency-parser/metadata
A ctakes-constituency-parser/metadata/install.xml
A ctakes-constituency-parser/LICENSE
U .
At revision 1765003
Parsing POMs
ERROR: Failed to parse POMs
java.io.IOException: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@153124c:H10: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-examples-res/pom.xml> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.FilePath.act(FilePath.java:1014)
at hudson.FilePath.act(FilePath.java:996)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:960)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:679)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:531)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-examples-res/pom.xml> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1364)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1098)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2772)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:332)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
at ......remote call to H10(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1416)
at hudson.remoting.UserResponse.retrieve(UserRequest.java:253)
at hudson.remoting.Channel.call(Channel.java:781)
at hudson.FilePath.act(FilePath.java:1007)
... 8 more
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-examples-res/pom.xml> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:364)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1301)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1098)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2772)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:332)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Jenkins build is back to normal : ctakes-trunk-compiletest #876
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/876/changes>