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Posted to commits@phoenix.apache.org by nd...@apache.org on 2015/04/19 22:43:55 UTC

phoenix git commit: PHOENIX-1888 [build] add pre-commit scripts

Repository: phoenix
Updated Branches:
  refs/heads/master fefc319c9 -> 92ec5ae95


PHOENIX-1888 [build] add pre-commit scripts


Project: http://git-wip-us.apache.org/repos/asf/phoenix/repo
Commit: http://git-wip-us.apache.org/repos/asf/phoenix/commit/92ec5ae9
Tree: http://git-wip-us.apache.org/repos/asf/phoenix/tree/92ec5ae9
Diff: http://git-wip-us.apache.org/repos/asf/phoenix/diff/92ec5ae9

Branch: refs/heads/master
Commit: 92ec5ae957f972a6966966736bef19cde4ffc29e
Parents: fefc319
Author: Nick Dimiduk <nd...@apache.org>
Authored: Sun Apr 19 13:43:51 2015 -0700
Committer: Nick Dimiduk <nd...@apache.org>
Committed: Sun Apr 19 13:43:51 2015 -0700

----------------------------------------------------------------------
 dev/jenkinsEnv.sh         |   31 ++
 dev/smart-apply-patch.sh  |   96 ++++
 dev/test-patch.properties |   35 ++
 dev/test-patch.sh         | 1081 ++++++++++++++++++++++++++++++++++++++++
 4 files changed, 1243 insertions(+)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/phoenix/blob/92ec5ae9/dev/jenkinsEnv.sh
----------------------------------------------------------------------
diff --git a/dev/jenkinsEnv.sh b/dev/jenkinsEnv.sh
new file mode 100755
index 0000000..d2e4f65
--- /dev/null
+++ b/dev/jenkinsEnv.sh
@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+#!/bin/bash
+
+##To set Jenkins Environment Variables:
+export JAVA_HOME=/home/jenkins/tools/java/latest
+export ANT_HOME=/home/jenkins/tools/ant/latest
+export XERCES_HOME=/home/jenkins/tools/xerces/latest
+export ECLIPSE_HOME=/home/jenkins/tools/eclipse/latest
+export FORREST_HOME=/home/jenkins/tools/forrest/latest
+export JAVA5_HOME=/home/jenkins/tools/java5/latest
+export FINDBUGS_HOME=/home/jenkins/tools/findbugs/latest
+export CLOVER_HOME=/home/jenkins/tools/clover/latest
+export MAVEN_HOME=/home/jenkins/tools/maven/latest
+
+export PATH=$PATH:$JAVA_HOME/bin:$ANT_HOME/bin:
+export MAVEN_OPTS="${MAVEN_OPTS:-"-Xmx3100M -XX:-UsePerfData -XX:MaxPermSize=256m"}"
+
+ulimit -n
+

http://git-wip-us.apache.org/repos/asf/phoenix/blob/92ec5ae9/dev/smart-apply-patch.sh
----------------------------------------------------------------------
diff --git a/dev/smart-apply-patch.sh b/dev/smart-apply-patch.sh
new file mode 100755
index 0000000..0b69eab
--- /dev/null
+++ b/dev/smart-apply-patch.sh
@@ -0,0 +1,96 @@
+#!/usr/bin/env bash
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+# Script used by https://builds.apache.org/job/PreCommit-Phoenix-Build/ for
+# applying a patch that's been attach to JIRA in "Patch Available" status.
+# Forked from HBase/master@176261a
+#
+
+set -e
+
+PATCH_FILE=$1
+if [ -z "$PATCH_FILE" ]; then
+  echo usage: $0 patch-file
+  exit 1
+fi
+
+PATCH=${PATCH:-patch} # allow overriding patch binary
+
+# Cleanup handler for temporary files
+TOCLEAN=""
+cleanup() {
+  rm $TOCLEAN
+  exit $1
+}
+trap "cleanup 1" HUP INT QUIT TERM
+
+# Allow passing "-" for stdin patches
+if [ "$PATCH_FILE" == "-" ]; then
+  PATCH_FILE=/tmp/tmp.in.$$
+  cat /dev/fd/0 > $PATCH_FILE
+  TOCLEAN="$TOCLEAN $PATCH_FILE"
+fi
+
+# Come up with a list of changed files into $TMP
+TMP=/tmp/tmp.paths.$$
+TOCLEAN="$TOCLEAN $TMP"
+
+if $PATCH -p0 -E --dry-run < $PATCH_FILE 2>&1 > $TMP; then
+  PLEVEL=0
+  #if the patch applied at P0 there is the possability that all we are doing
+  # is adding new files and they would apply anywhere. So try to guess the
+  # correct place to put those files.
+
+#  NOTE 2014/07/17:
+#  Temporarily disabling below check since our jenkins boxes seems to be not defaulting to bash 
+#  causing below checks to fail. Once it is fixed, we can revert the commit and enable this again.
+
+#  TMP2=/tmp/tmp.paths.2.$$
+#  TOCLEAN="$TOCLEAN $TMP2"
+#
+#  grep '^patching file ' $TMP | awk '{print $3}' | grep -v /dev/null | sort | uniq > $TMP2
+#
+#  #first off check that all of the files do not exist
+#  FOUND_ANY=0
+#  for CHECK_FILE in $(cat $TMP2)
+#  do
+#    if [[ -f $CHECK_FILE ]]; then
+#      FOUND_ANY=1
+#    fi
+#  done
+#
+#  if [[ "$FOUND_ANY" = "0" ]]; then
+#    #all of the files are new files so we have to guess where the correct place to put it is.
+#
+#    # if all of the lines start with a/ or b/, then this is a git patch that
+#    # was generated without --no-prefix
+#    if ! grep -qv '^a/\|^b/' $TMP2 ; then
+#      echo Looks like this is a git patch. Stripping a/ and b/ prefixes
+#      echo and incrementing PLEVEL
+#      PLEVEL=$[$PLEVEL + 1]
+#      sed -i -e 's,^[ab]/,,' $TMP2
+#    fi
+#  fi
+elif $PATCH -p1 -E --dry-run < $PATCH_FILE 2>&1 > /dev/null; then
+  PLEVEL=1
+elif $PATCH -p2 -E --dry-run < $PATCH_FILE 2>&1 > /dev/null; then
+  PLEVEL=2
+else
+  echo "The patch does not appear to apply with p0 to p2";
+  cleanup 1;
+fi
+
+echo Going to apply patch with: $PATCH -p$PLEVEL
+$PATCH -p$PLEVEL -E < $PATCH_FILE
+
+cleanup $?

http://git-wip-us.apache.org/repos/asf/phoenix/blob/92ec5ae9/dev/test-patch.properties
----------------------------------------------------------------------
diff --git a/dev/test-patch.properties b/dev/test-patch.properties
new file mode 100644
index 0000000..2606a75
--- /dev/null
+++ b/dev/test-patch.properties
@@ -0,0 +1,35 @@
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+MAVEN_OPTS="${MAVEN_OPTS:-"-Xmx3100M"}"
+
+# The number of acceptable warning for *all* modules
+# Please update the per-module test-patch.properties if you update this file.
+
+OK_RELEASEAUDIT_WARNINGS=0
+# Allow two warnings.  Javadoc complains about sun.misc.Unsafe use.  See HBASE-7457
+OK_JAVADOC_WARNINGS=2
+
+MAX_LINE_LENGTH=100
+
+# All supported branches for testing with precommit build
+# be sure to consider branch name prefixes in the order, ie, 4.x should appear
+# before 4 since the latter is a prefix
+BRANCH_NAMES="3.0 3.2 4.0.1 4.2 4.3 4.x-HBase-0.98 master"
+
+
+# All supported Hadoop versions that we want to test the compilation with
+HADOOP2_VERSIONS="2.4.1 2.5.2 2.6.0"
+HADOOP3_VERSIONS="3.0.0-SNAPSHOT"

http://git-wip-us.apache.org/repos/asf/phoenix/blob/92ec5ae9/dev/test-patch.sh
----------------------------------------------------------------------
diff --git a/dev/test-patch.sh b/dev/test-patch.sh
new file mode 100755
index 0000000..4bc1f4e
--- /dev/null
+++ b/dev/test-patch.sh
@@ -0,0 +1,1081 @@
+#!/usr/bin/env bash
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+#
+# Script used by https://builds.apache.org/job/PreCommit-Phoenix-Build/ for
+# checking patched attached to JIRA in "Patch Available" status.
+# Forked from HBase/master@176261a
+#
+
+set -x
+
+### Setup some variables.  
+### GIT_COMMIT and BUILD_URL are set by Hudson if it is run by patch process
+### Read variables from properties file
+bindir=$(dirname $0)
+
+# Defaults
+if [ -z "$MAVEN_HOME" ]; then
+  MVN=mvn
+else
+  MVN=$MAVEN_HOME/bin/mvn
+fi
+
+NEWLINE=$'\n'
+
+PROJECT_NAME=Phoenix
+JENKINS=false
+PATCH_DIR=/tmp
+BASEDIR=$(pwd)
+BRANCH_NAME="master"
+
+. $BASEDIR/dev/test-patch.properties
+
+PS=${PS:-ps}
+AWK=${AWK:-awk}
+WGET=${WGET:-wget}
+GREP=${GREP:-grep}
+EGREP=${EGREP:-egrep}
+PATCH=${PATCH:-patch}
+JIRACLI=${JIRA:-jira}
+FINDBUGS_HOME=${FINDBUGS_HOME}
+FORREST_HOME=${FORREST_HOME}
+ECLIPSE_HOME=${ECLIPSE_HOME}
+GIT=${GIT:-git}
+
+###############################################################################
+printUsage() {
+  echo "Usage: $0 [options] patch-file | defect-number"
+  echo
+  echo "Where:"
+  echo "  patch-file is a local patch file containing the changes to test"
+  echo "  defect-number is a JIRA defect number (e.g. 'HADOOP-1234') to test (Jenkins only)"
+  echo
+  echo "Options:"
+  echo "--patch-dir=<dir>      The directory for working and output files (default '/tmp')"
+  echo "--basedir=<dir>        The directory to apply the patch to (default current directory)"
+  echo "--mvn-cmd=<cmd>        The 'mvn' command to use (default \$MAVEN_HOME/bin/mvn, or 'mvn')"
+  echo "--ps-cmd=<cmd>         The 'ps' command to use (default 'ps')"
+  echo "--awk-cmd=<cmd>        The 'awk' command to use (default 'awk')"
+  echo "--grep-cmd=<cmd>       The 'grep' command to use (default 'grep')"
+  echo "--patch-cmd=<cmd>      The 'patch' command to use (default 'patch')"
+  echo "--findbugs-home=<path> Findbugs home directory (default FINDBUGS_HOME environment variable)"
+  echo "--forrest-home=<path>  Forrest home directory (default FORREST_HOME environment variable)"
+  echo "--dirty-workspace      Allow the local workspace to have uncommitted changes"
+  echo "--git-cmd=<cmd>        The 'git' command to use (default 'git')"
+  echo
+  echo "Jenkins-only options:"
+  echo "--jenkins              Run by Jenkins (runs tests and posts results to JIRA)"
+  echo "--wget-cmd=<cmd>       The 'wget' command to use (default 'wget')"
+  echo "--jira-cmd=<cmd>       The 'jira' command to use (default 'jira')"
+  echo "--jira-password=<pw>   The password for the 'jira' command"
+  echo "--eclipse-home=<path>  Eclipse home directory (default ECLIPSE_HOME environment variable)"
+}
+
+###############################################################################
+parseArgs() {
+  for i in $*
+  do
+    case $i in
+    --jenkins)
+      JENKINS=true
+      ;;
+    --patch-dir=*)
+      PATCH_DIR=${i#*=}
+      ;;
+    --basedir=*)
+      BASEDIR=${i#*=}
+      ;;
+    --mvn-cmd=*)
+      MVN=${i#*=}
+      ;;
+    --ps-cmd=*)
+      PS=${i#*=}
+      ;;
+    --awk-cmd=*)
+      AWK=${i#*=}
+      ;;
+    --wget-cmd=*)
+      WGET=${i#*=}
+      ;;
+    --grep-cmd=*)
+      GREP=${i#*=}
+      ;;
+    --patch-cmd=*)
+      PATCH=${i#*=}
+      ;;
+    --jira-cmd=*)
+      JIRACLI=${i#*=}
+      ;;
+    --jira-password=*)
+      JIRA_PASSWD=${i#*=}
+      ;;
+    --findbugs-home=*)
+      FINDBUGS_HOME=${i#*=}
+      ;;
+    --forrest-home=*)
+      FORREST_HOME=${i#*=}
+      ;;
+    --eclipse-home=*)
+      ECLIPSE_HOME=${i#*=}
+      ;;
+    --dirty-workspace)
+      DIRTY_WORKSPACE=true
+      ;;
+    --git-cmd=*)
+      GIT=${i#*=}
+      ;;
+    *)
+      PATCH_OR_DEFECT=$i
+      ;;
+    esac
+  done
+  if [ -z "$PATCH_OR_DEFECT" ]; then
+    printUsage
+    exit 1
+  fi
+  if [[ $JENKINS == "true" ]] ; then
+    echo "Running in Jenkins mode"
+    defect=$PATCH_OR_DEFECT
+    ECLIPSE_PROPERTY="-Declipse.home=$ECLIPSE_HOME"
+  else
+    echo "Running in developer mode"
+    JENKINS=false
+    ### PATCH_FILE contains the location of the patchfile
+    PATCH_FILE=$PATCH_OR_DEFECT
+    if [[ ! -e "$PATCH_FILE" ]] ; then
+      echo "Unable to locate the patch file $PATCH_FILE"
+      cleanupAndExit 0
+    fi
+    ### Check if $PATCH_DIR exists. If it does not exist, create a new directory
+    if [[ ! -e "$PATCH_DIR" ]] ; then
+      mkdir "$PATCH_DIR"
+      if [[ $? == 0 ]] ; then 
+        echo "$PATCH_DIR has been created"
+      else
+        echo "Unable to create $PATCH_DIR"
+        cleanupAndExit 0
+      fi
+    fi
+    ### Obtain the patch filename to append it to the version number
+    defect=`basename $PATCH_FILE`
+  fi
+}
+
+###############################################################################
+checkout () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Testing patch for ${defect}."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  ### When run by a developer, if the workspace contains modifications, do not continue
+  ### unless the --dirty-workspace option was set
+  if [[ $JENKINS == "false" ]] ; then
+    if [[ -z $DIRTY_WORKSPACE ]] ; then
+      # Ref http://stackoverflow.com/a/2659808 for details on checking dirty status
+      ${GIT} diff-index --quiet HEAD
+      if [[ $? -ne 0 ]] ; then
+        uncommitted=`${GIT} diff --name-only HEAD`
+        uncommitted="You have the following files with uncommitted changes:${NEWLINE}${uncommitted}"
+      fi
+      untracked="$(${GIT} ls-files --exclude-standard --others)" && test -z "${untracked}"
+      if [[ $? -ne 0 ]] ; then
+        untracked="You have untracked and unignored files:${NEWLINE}${untracked}"
+      fi
+      if [[ $uncommitted || $untracked ]] ; then
+        echo "ERROR: can't run in a workspace that contains modifications."
+        echo "Pass the '--dirty-workspace' flag to bypass."
+        echo ""
+        echo "${uncommitted}"
+        echo ""
+        echo "${untracked}"
+        cleanupAndExit 1
+      fi
+    fi
+    echo
+  fi
+  return $?
+}
+
+findBranchNameFromPatchName() {
+  local patchName=$1
+  for LOCAL_BRANCH_NAME in $BRANCH_NAMES; do
+    if [[ $patchName =~ /jira/secure/attachment/[0-9]*/.*$LOCAL_BRANCH_NAME ]]; then
+      BRANCH_NAME=$LOCAL_BRANCH_NAME
+      break
+    fi
+  done
+  return 0
+}
+
+checkoutBranch() {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Testing patch on branch ${BRANCH_NAME}."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  if [[ $JENKINS == "true" ]] ; then
+    if [[ "$BRANCH_NAME" != "master" ]]; then
+      echo "origin/${BRANCH_NAME} HEAD is commit `${GIT} rev-list origin/${BRANCH_NAME} -1`"
+      echo "${GIT} checkout -f  `${GIT} rev-list origin/${BRANCH_NAME} -1`"
+      ${GIT} checkout -f  `${GIT} rev-list origin/${BRANCH_NAME} -1`
+      echo "${GIT} status"
+      ${GIT} status
+    fi
+  fi
+}
+
+###############################################################################
+###  Collect findbugs reports
+collectFindbugsReports() {
+  name=$1
+  basedir=$2
+  patch_dir=$3
+  for file in $(find $basedir -name findbugsXml.xml)
+  do
+    relative_file=${file#$basedir/} # strip leading $basedir prefix
+    if [ ! $relative_file == "target/findbugsXml.xml" ]; then
+      module_suffix=${relative_file%/target/findbugsXml.xml} # strip trailing path
+      module_suffix=`basename ${module_suffix}`
+    fi
+
+    cp $file $patch_dir/${name}FindbugsWarnings${module_suffix}.xml
+    $FINDBUGS_HOME/bin/setBugDatabaseInfo -name $name \
+      $patch_dir/${name}FindbugsWarnings${module_suffix}.xml \
+      $patch_dir/${name}FindbugsWarnings${module_suffix}.xml
+  done
+  xml_file=$patch_dir/${name}FindbugsWarnings.xml
+  html_file=$patch_dir/${name}FindbugsWarnings.html
+  $FINDBUGS_HOME/bin/unionBugs -withMessages \
+	 -output $xml_file $patch_dir/${name}FindbugsWarnings*.xml
+  $FINDBUGS_HOME/bin/convertXmlToText -html $xml_file $html_file
+  file $xml_file $html_file
+}
+
+###############################################################################
+setup () {
+  ### Download latest patch file (ignoring .htm and .html) when run from patch process
+  if [[ $JENKINS == "true" ]] ; then
+    $WGET -q -O $PATCH_DIR/jira http://issues.apache.org/jira/browse/$defect
+    if [[ `$GREP -c 'Patch Available' $PATCH_DIR/jira` == 0 ]] ; then
+      echo "$defect is not \"Patch Available\".  Exiting."
+      cleanupAndExit 0
+    fi
+    relativePatchURL=`$GREP -o '"/jira/secure/attachment/[0-9]*/[^"]*' $PATCH_DIR/jira | $EGREP '(\.txt$|\.patch$|\.diff$)' | sort | tail -1 | $GREP -o '/jira/secure/attachment/[0-9]*/[^"]*'`
+    patchURL="http://issues.apache.org${relativePatchURL}"
+    patchNum=`echo $patchURL | $GREP -o '[0-9]*/' | $GREP -o '[0-9]*'`
+    # ensure attachment has not already been tested
+    ATTACHMENT_ID=$(basename $(dirname $patchURL))
+    if grep -q "ATTACHMENT ID: $ATTACHMENT_ID" $PATCH_DIR/jira
+    then
+      echo "Attachment $ATTACHMENT_ID is already tested for $defect"
+      exit 1
+    fi
+    echo "$defect patch is being downloaded at `date` from"
+    echo "$patchURL"
+    $WGET -q -O $PATCH_DIR/patch $patchURL
+    VERSION=${GIT_COMMIT}_${defect}_PATCH-${patchNum}
+    findBranchNameFromPatchName ${relativePatchURL}
+    checkoutBranch
+    JIRA_COMMENT="Here are the results of testing the latest attachment 
+  $patchURL
+  against ${BRANCH_NAME} branch at commit ${GIT_COMMIT}.
+  ATTACHMENT ID: ${ATTACHMENT_ID}"
+
+  ### Copy the patch file to $PATCH_DIR
+  else
+    VERSION=PATCH-${defect}
+    cp $PATCH_FILE $PATCH_DIR/patch
+    if [[ $? == 0 ]] ; then
+      echo "Patch file $PATCH_FILE copied to $PATCH_DIR"
+    else
+      echo "Could not copy $PATCH_FILE to $PATCH_DIR"
+      cleanupAndExit 0
+    fi
+  fi
+  ### exit if warnings are NOT defined in the properties file
+  if [[ -z "$OK_JAVADOC_WARNINGS" ]] || [[ -z $OK_RELEASEAUDIT_WARNINGS ]] ; then
+    echo "Please define the following properties in test-patch.properties file"
+	 echo  "OK_RELEASEAUDIT_WARNINGS"
+	 echo  "OK_JAVADOC_WARNINGS"
+    cleanupAndExit 1
+  fi
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo " Pre-build master to verify stability and javac warnings"
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+#  echo "$MVN clean package checkstyle:checkstyle-aggregate findbugs:findbugs -DskipTests \
+  echo "$MVN clean package -DskipTests \
+ -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/trunkJavacWarnings.txt 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  # build core and tests
+#  $MVN clean package checkstyle:checkstyle-aggregate findbugs:findbugs -DskipTests \
+  $MVN clean package -DskipTests \
+	 -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/trunkJavacWarnings.txt 2>&1
+  if [[ $? != 0 ]] ; then
+    ERR=`$GREP -A 5 'Compilation failure' $PATCH_DIR/trunkJavacWarnings.txt`
+    echo "Trunk compilation is broken?
+    {code}$ERR{code}"
+    cleanupAndExit 1
+  fi
+#  mv target/checkstyle-result.xml $PATCH_DIR/trunkCheckstyle.xml
+#  collectFindbugsReports trunk $BASEDIR $PATCH_DIR
+}
+
+###############################################################################
+### Check for @author tags in the patch
+checkAuthor () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking there are no @author tags in the patch."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  authorTags=`$GREP -c -i '@author' $PATCH_DIR/patch`
+  echo "There appear to be $authorTags @author tags in the patch."
+  if [[ $authorTags != 0 ]] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 @author{color}.  The patch appears to contain $authorTags @author tags which the Hadoop community has agreed to not allow in code contributions."
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 @author{color}.  The patch does not contain any @author tags."
+  return 0
+}
+
+###############################################################################
+### Check for tests in the patch
+checkTests () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking there are new or changed tests in the patch."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  testReferences=`$GREP -c -i '/test' $PATCH_DIR/patch`
+  echo "There appear to be $testReferences test files referenced in the patch."
+  if [[ $testReferences == 0 ]] ; then
+    if [[ $JENKINS == "true" ]] ; then
+      patchIsDoc=`$GREP -c -i 'title="documentation' $PATCH_DIR/jira`
+      if [[ $patchIsDoc != 0 ]] ; then
+        echo "The patch appears to be a documentation patch that doesn't require tests."
+        JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+0 tests included{color}.  The patch appears to be a documentation patch that doesn't require tests."
+        return 0
+      fi
+    fi
+    srcReferences=`${GREP} "diff --git" "${PATCH_DIR}/patch" | ${GREP} "src/main" | \
+        ${GREP} -v "src/main/asciidoc" | ${GREP} -v "src/main/site" -c`
+    if [[ $srcReferences == 0 ]] ; then
+      echo "The patch doesn't appear to alter any code that requires tests."
+      JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+0 tests included{color}.  The patch appears to be a documentation, build,
+                        or dev-support patch that doesn't require tests."
+      return 0
+    fi
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 tests included{color}.  The patch doesn't appear to include any new or modified tests.
+                        Please justify why no new tests are needed for this patch.
+                        Also please list what manual steps were performed to verify this patch."
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 tests included{color}.  The patch appears to include $testReferences new or modified tests."
+  return 0
+}
+
+###############################################################################
+### Check there are no compilation errors, passing a file to be parsed.
+checkCompilationErrors() {
+  local file=$1
+  hadoopVersion=""
+  if [ "$#" -ne 1 ]; then
+    hadoopVersion="with Hadoop version $2"
+  fi
+  COMPILATION_ERROR=false
+  eval $(awk '/ERROR/ {print "COMPILATION_ERROR=true"}' $file)
+  if $COMPILATION_ERROR ; then
+    ERRORS=$($AWK '/ERROR/ { print $0 }' $file)
+    echo "======================================================================"
+    echo "There are compilation errors $hadoopVersion."
+    echo "======================================================================"
+    echo "$ERRORS"
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 javac{color}.  The patch appears to cause mvn compile goal to fail $hadoopVersion.
+
+    Compilation errors resume:
+    $ERRORS
+    "
+    submitJiraComment 1
+    cleanupAndExit 1
+  fi
+}
+
+###############################################################################
+### Check there are no protoc compilation errors, passing a file to be parsed.
+checkProtocCompilationErrors() {
+  local file=$1
+  COMPILATION_ERROR=false
+  eval $(awk '/\[ERROR/ {print "COMPILATION_ERROR=true"}' $file)
+  if $COMPILATION_ERROR ; then
+    ERRORS=$($AWK '/\[ERROR/ { print $0 }' $file)
+    echo "======================================================================"
+    echo "There are Protoc compilation errors."
+    echo "======================================================================"
+    echo "$ERRORS"
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 javac{color}.  The patch appears to cause mvn compile-protobuf profile to fail.
+
+    Protoc Compilation errors resume:
+    $ERRORS
+    "
+    cleanupAndExit 1
+  fi
+}
+
+###############################################################################
+### Attempt to apply the patch
+applyPatch () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Applying patch."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+ 
+  export PATCH
+  $BASEDIR/dev-support/smart-apply-patch.sh $PATCH_DIR/patch
+  if [[ $? != 0 ]] ; then
+    echo "PATCH APPLICATION FAILED"
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 patch{color}.  The patch command could not apply the patch."
+    return 1
+  fi
+  return 0
+}
+
+###############################################################################
+### Check against known anti-patterns
+checkAntiPatterns () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking against known anti-patterns."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  warnings=`$GREP 'new TreeMap<byte.*()' $PATCH_DIR/patch`
+  if [[ $warnings != "" ]]; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+		    {color:red}-1 Anti-pattern{color}.  The patch appears to have anti-pattern where BYTES_COMPARATOR was omitted:
+             $warnings."
+	  return 1
+  fi
+  return 0
+}
+
+###############################################################################
+### Check that there are no incorrect annotations
+checkInterfaceAudience () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking against hadoop InterfaceAudience."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  warnings=`$GREP 'import org.apache.hadoop.classification' $PATCH_DIR/patch`
+  if [[ $warnings != "" ]]; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+		    {color:red}-1 InterfaceAudience{color}.  The patch appears to contain InterfaceAudience from hadoop rather than hbase:
+             $warnings."
+	  return 1
+  fi
+  return 0
+}
+
+###############################################################################
+### Check there are no javadoc warnings
+checkJavadocWarnings () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining number of patched javadoc warnings."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  echo "$MVN clean package javadoc:javadoc -DskipTests -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/patchJavadocWarnings.txt 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN clean package javadoc:javadoc -DskipTests -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/patchJavadocWarnings.txt 2>&1
+  javadocWarnings=`$GREP '\[WARNING\]' $PATCH_DIR/patchJavadocWarnings.txt | $AWK '/Javadoc Warnings/,EOF' | $GREP warning | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+  echo ""
+  echo ""
+  echo "There appear to be $javadocWarnings javadoc warnings generated by the patched build."
+
+  ### if current warnings greater than OK_JAVADOC_WARNINGS
+  if [[ $javadocWarnings -gt $OK_JAVADOC_WARNINGS ]] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 javadoc{color}.  The javadoc tool appears to have generated `expr $(($javadocWarnings-$OK_JAVADOC_WARNINGS))` warning messages."
+    # Add javadoc output url
+    JIRA_COMMENT_FOOTER="Javadoc warnings: $BUILD_URL/artifact/patchprocess/patchJavadocWarnings.txt
+$JIRA_COMMENT_FOOTER"
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 javadoc{color}.  The javadoc tool did not generate any warning messages."
+  return 0
+}
+
+checkBuildWithHadoopVersions() {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Building with all supported Hadoop versions ."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  for HADOOP2_VERSION in $HADOOP2_VERSIONS ; do
+	echo "$MVN clean install -DskipTests -D${PROJECT_NAME}PatchProcess -Dhadoop-two.version=$HADOOP2_VERSION > $PATCH_DIR/patchJavacWithHadoop-$HADOOP2_VERSION.txt 2>&1"
+    $MVN clean install -DskipTests -D${PROJECT_NAME}PatchProcess -Dhadoop-two.version=$HADOOP2_VERSION > $PATCH_DIR/patchJavacWithHadoop-$HADOOP2_VERSION.txt 2>&1
+    checkCompilationErrors $PATCH_DIR/patchJavacWithHadoop-$HADOOP2_VERSION.txt $HADOOP2_VERSION
+  done
+
+  # TODO: add Hadoop3 versions and compilation here when we get the hadoop.profile=3.0 working
+
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 hadoop versions{color}. The patch compiles with all supported hadoop versions ($HADOOP2_VERSIONS)"
+  return 0
+}
+
+###############################################################################
+### Check there are no changes in the number of Javac warnings
+checkJavacWarnings () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining number of patched javac warnings."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  echo "$MVN clean package -DskipTests -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/patchJavacWarnings.txt 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN clean package -DskipTests -D${PROJECT_NAME}PatchProcess  > $PATCH_DIR/patchJavacWarnings.txt 2>&1
+  checkCompilationErrors $PATCH_DIR/patchJavacWarnings.txt
+  ### Compare trunk and patch javac warning numbers
+  if [[ -f $PATCH_DIR/patchJavacWarnings.txt ]] ; then
+    trunkJavacWarnings=`$GREP '\[WARNING\]' $PATCH_DIR/trunkJavacWarnings.txt | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+    patchJavacWarnings=`$GREP '\[WARNING\]' $PATCH_DIR/patchJavacWarnings.txt | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+    echo "There appear to be $trunkJavacWarnings javac compiler warnings before the patch and $patchJavacWarnings javac compiler warnings after applying the patch."
+    if [[ $patchJavacWarnings != "" && $trunkJavacWarnings != "" ]] ; then
+      if [[ $patchJavacWarnings -gt $trunkJavacWarnings ]] ; then
+        JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 javac{color}.  The applied patch generated $patchJavacWarnings javac compiler warnings (more than the master's current $trunkJavacWarnings warnings)."
+        return 1
+      fi
+    fi
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 javac{color}.  The applied patch does not increase the total number of javac compiler warnings."
+  return 0
+}
+
+checkCheckstyleErrors() {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining number of patched Checkstyle errors."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  if [[ -f $PATCH_DIR/trunkCheckstyle.xml ]] ; then
+    $MVN package -DskipTests checkstyle:checkstyle-aggregate > /dev/null 2>&1
+    mv target/checkstyle-result.xml $PATCH_DIR/patchCheckstyle.xml
+    mv target/site/checkstyle-aggregate.html $PATCH_DIR
+    mv target/site/checkstyle.css $PATCH_DIR
+    trunkCheckstyleErrors=`$GREP '<error' $PATCH_DIR/trunkCheckstyle.xml | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+    patchCheckstyleErrors=`$GREP '<error' $PATCH_DIR/patchCheckstyle.xml | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+    if [[ $patchCheckstyleErrors -gt $trunkCheckstyleErrors ]] ; then
+                JIRA_COMMENT_FOOTER="Checkstyle Errors: $BUILD_URL/artifact/patchprocess/checkstyle-aggregate.html
+
+                $JIRA_COMMENT_FOOTER"
+
+                JIRA_COMMENT="$JIRA_COMMENT
+
+                {color:red}-1 checkstyle{color}.  The applied patch generated $patchCheckstyleErrors checkstyle errors (more than the master's current $trunkCheckstyleErrors errors)."
+        return 1
+    fi
+    echo "There were $patchCheckstyleErrors checkstyle errors in this patch compared to $trunkCheckstyleErrors on master."
+  fi
+  JIRA_COMMENT_FOOTER="Checkstyle Errors: $BUILD_URL/artifact/patchprocess/checkstyle-aggregate.html
+
+  $JIRA_COMMENT_FOOTER"
+
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 checkstyle{color}.  The applied patch does not increase the total number of checkstyle errors"
+  return 0
+
+}
+###############################################################################
+checkProtocErrors () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining whether there is patched protoc error."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  echo "$MVN clean install -DskipTests -Pcompile-protobuf -X -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/patchProtocErrors.txt 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN clean install -DskipTests -Pcompile-protobuf -X -D${PROJECT_NAME}PatchProcess  > $PATCH_DIR/patchProtocErrors.txt 2>&1
+  checkProtocCompilationErrors $PATCH_DIR/patchProtocErrors.txt
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 protoc{color}.  The applied patch does not increase the total number of protoc compiler warnings."
+  return 0
+}
+
+###############################################################################
+### Check there are no changes in the number of release audit (RAT) warnings
+checkReleaseAuditWarnings () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining number of patched release audit warnings."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  echo "$MVN apache-rat:check -D${PROJECT_NAME}PatchProcess 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN apache-rat:check -D${PROJECT_NAME}PatchProcess 2>&1
+  find $BASEDIR -name rat.txt | xargs cat > $PATCH_DIR/patchReleaseAuditWarnings.txt
+
+  ### Compare trunk and patch release audit warning numbers
+  if [[ -f $PATCH_DIR/patchReleaseAuditWarnings.txt ]] ; then
+    patchReleaseAuditWarnings=`$GREP -c '\!?????' $PATCH_DIR/patchReleaseAuditWarnings.txt`
+    echo ""
+    echo ""
+    echo "There appear to be $OK_RELEASEAUDIT_WARNINGS release audit warnings before the patch and $patchReleaseAuditWarnings release audit warnings after applying the patch."
+    if [[ $patchReleaseAuditWarnings != "" && $OK_RELEASEAUDIT_WARNINGS != "" ]] ; then
+      if [[ $patchReleaseAuditWarnings -gt $OK_RELEASEAUDIT_WARNINGS ]] ; then
+        JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 release audit{color}.  The applied patch generated $patchReleaseAuditWarnings release audit warnings (more than the master's current $OK_RELEASEAUDIT_WARNINGS warnings)."
+        $GREP '\!?????' $PATCH_DIR/patchReleaseAuditWarnings.txt > $PATCH_DIR/patchReleaseAuditProblems.txt
+        echo "Lines that start with ????? in the release audit report indicate files that do not have an Apache license header." >> $PATCH_DIR/patchReleaseAuditProblems.txt
+        JIRA_COMMENT_FOOTER="Release audit warnings: $BUILD_URL/artifact/patchprocess/patchReleaseAuditWarnings.txt
+$JIRA_COMMENT_FOOTER"
+        return 1
+      fi
+    fi
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 release audit{color}.  The applied patch does not increase the total number of release audit warnings."
+  return 0
+}
+
+###############################################################################
+### Check there are no changes in the number of Findbugs warnings
+checkFindbugsWarnings () {
+  findbugs_version=`${FINDBUGS_HOME}/bin/findbugs -version`
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Determining number of patched Findbugs warnings."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  echo "$MVN clean package findbugs:findbugs -D${PROJECT_NAME}PatchProcess" 
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN clean package findbugs:findbugs -D${PROJECT_NAME}PatchProcess -DskipTests < /dev/null
+
+  if [ $? != 0 ] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 findbugs{color}.  The patch appears to cause Findbugs (version ${findbugs_version}) to fail."
+    return 1
+  fi
+
+  collectFindbugsReports patch $BASEDIR $PATCH_DIR 
+  #this files are generated by collectFindbugsReports() named with its first argument
+  patch_xml=$PATCH_DIR/patchFindbugsWarnings.xml
+  trunk_xml=$PATCH_DIR/trunkFindbugsWarnings.xml
+  # combine them to one database
+  combined_xml=$PATCH_DIR/combinedFindbugsWarnings.xml
+  new_xml=$PATCH_DIR/newFindbugsWarnings.xml
+  new_html=$PATCH_DIR/newFindbugsWarnings.html
+  $FINDBUGS_HOME/bin/computeBugHistory -useAnalysisTimes -withMessages \
+	-output $combined_xml $trunk_xml $patch_xml
+  findbugsWarnings=$($FINDBUGS_HOME/bin/filterBugs -first patch $combined_xml $new_xml)
+  findbugsFixedWarnings=$($FINDBUGS_HOME/bin/filterBugs -fixed patch $combined_xml $new_xml)
+  $FINDBUGS_HOME/bin/convertXmlToText -html  $new_xml $new_html
+  file $new_xml $new_html
+  JIRA_COMMENT_FOOTER="Release Findbugs (version ${findbugs_version}) \
+	warnings: $BUILD_URL/artifact/patchprocess/newFindbugsWarnings.html
+$JIRA_COMMENT_FOOTER"
+  ### if current warnings greater than 0, fail
+  if [[ $findbugsWarnings -gt 0 ]] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 findbugs{color}.  The patch appears to introduce $findbugsWarnings \
+ new Findbugs (version ${findbugs_version}) warnings."
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 findbugs{color}.  The patch does not introduce any \
+ new Findbugs (version ${findbugs_version}) warnings."
+  return 0
+}
+
+###############################################################################
+### Check line lengths
+checkLineLengths () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking that no line have length > $MAX_LINE_LENGTH"
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  #see http://en.wikipedia.org/wiki/Diff#Unified_format
+
+  MAX_LINE_LENGTH_PATCH=`expr $MAX_LINE_LENGTH + 1`
+  lines=`cat $PATCH_DIR/patch | grep "^+" | grep -v "^@@" | grep -v "^+++" | grep -v "import" | grep -v "org.apache.thrift." | grep -v "com.google.protobuf." | grep -v "phoenix.*.generated" | awk -v len="$MAX_LINE_LENGTH_PATCH" 'length ($0) > len' | head -n 10`
+  ll=`echo "$lines" | wc -l`
+  if [[ "$ll" -gt "1" ]]; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 lineLengths{color}.  The patch introduces the following lines longer than $MAX_LINE_LENGTH:
+    $lines"
+
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 lineLengths{color}.  The patch does not introduce lines longer than $MAX_LINE_LENGTH"
+  return 0
+}
+
+###############################################################################
+### Run the tests
+runTests () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Running tests."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+
+
+  ### kill any process remaining from another test, maybe even another project
+  jps | grep surefirebooter | cut -d ' ' -f 1 | xargs kill -9 2>/dev/null
+  
+  failed_tests=""
+  ### Kill any rogue build processes from the last attempt
+  condemnedCount=`$PS auxwww | $GREP ${PROJECT_NAME}PatchProcess | $AWK '{print $2}' | $AWK 'BEGIN {total = 0} {total += 1} END {print total}'`
+  echo "WARNING: $condemnedCount rogue build processes detected, terminating."
+  $PS auxwww | $GREP ${PROJECT_NAME}PatchProcess | $AWK '{print $2}' | /usr/bin/xargs -t -I {} /bin/kill -9 {} > /dev/null
+  echo "$MVN clean test -Dsurefire.rerunFailingTestsCount=2 -P runAllTests -D${PROJECT_NAME}PatchProcess"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  ulimit -a
+  $MVN clean test -Dsurefire.rerunFailingTestsCount=2 -P runAllTests -D${PROJECT_NAME}PatchProcess
+  if [[ $? != 0 ]] ; then
+     ### Find and format names of failed tests
+     failed_tests=`find . -name 'TEST*.xml' | xargs $GREP  -l -E "<failure|<error" | sed -e "s|.*target/surefire-reports/TEST-|                  |g" | sed -e "s|\.xml||g"`
+ 
+     JIRA_COMMENT="$JIRA_COMMENT
+
+     {color:red}-1 core tests{color}.  The patch failed these unit tests:
+     $failed_tests"
+     BAD=1
+  else
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 core tests{color}.  The patch passed unit tests in $modules."
+    BAD=0
+  fi
+  ZOMBIE_TESTS_COUNT=`jps | grep surefirebooter | wc -l`
+  if [[ $ZOMBIE_TESTS_COUNT != 0 ]] ; then
+    #It seems sometimes the tests are not dying immediately. Let's give them 30s
+    echo "Suspicious java process found - waiting 30s to see if there are just slow to stop"
+    sleep 30
+    ZOMBIE_TESTS_COUNT=`jps | grep surefirebooter | wc -l`
+    if [[ $ZOMBIE_TESTS_COUNT != 0 ]] ; then
+      echo "There are $ZOMBIE_TESTS_COUNT zombie tests, they should have been killed by surefire but survived"
+      echo "************ BEGIN zombies jstack extract"
+      ZB_STACK=`jps | grep surefirebooter | cut -d ' ' -f 1 | xargs -n 1 jstack | grep ".test" | grep "\.java"`
+      jps | grep surefirebooter | cut -d ' ' -f 1 | xargs -n 1 jstack
+      echo "************ END  zombies jstack extract"
+      JIRA_COMMENT="$JIRA_COMMENT
+
+     {color:red}-1 core zombie tests{color}.  There are ${ZOMBIE_TESTS_COUNT} zombie test(s): ${ZB_STACK}"
+      BAD=1
+      jps | grep surefirebooter | cut -d ' ' -f 1 | xargs kill -9
+    else
+      echo "We're ok: there is no zombie test, but some tests took some time to stop"
+    fi
+  else
+    echo "We're ok: there is no zombie test"
+  fi
+  return $BAD
+}
+
+###############################################################################
+### Check docbook site xml
+checkSiteXml () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking Site generation"
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+
+  echo "$MVN package site -DskipTests -D${PROJECT_NAME}PatchProcess > $PATCH_DIR/patchSiteOutput.txt 2>&1"
+  export MAVEN_OPTS="${MAVEN_OPTS}"
+  $MVN package site -DskipTests -D${PROJECT_NAME}PatchProcess  > $PATCH_DIR/patchSiteOutput.txt 2>&1
+  if [[ $? != 0 ]] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 site{color}.  The patch appears to cause mvn site goal to fail."
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+  {color:green}+1 site{color}.  The mvn site goal succeeds with this patch."
+  return 0
+}
+
+###############################################################################
+### Run the inject-system-faults target
+checkInjectSystemFaults () {
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Checking the integrity of system test framework code."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  
+  ### Kill any rogue build processes from the last attempt
+  $PS auxwww | $GREP ${PROJECT_NAME}PatchProcess | $AWK '{print $2}' | /usr/bin/xargs -t -I {} /bin/kill -9 {} > /dev/null
+
+  #echo "$ANT_HOME/bin/ant -Dversion="${VERSION}" -DHadoopPatchProcess= -Dtest.junit.output.format=xml -Dtest.output=no -Dcompile.c++=yes -Dforrest.home=$FORREST_HOME inject-system-faults"
+  #$ANT_HOME/bin/ant -Dversion="${VERSION}" -DHadoopPatchProcess= -Dtest.junit.output.format=xml -Dtest.output=no -Dcompile.c++=yes -Dforrest.home=$FORREST_HOME inject-system-faults
+  echo "NOP"
+  return 0
+  if [[ $? != 0 ]] ; then
+    JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:red}-1 system test framework{color}.  The patch failed system test framework compile."
+    return 1
+  fi
+  JIRA_COMMENT="$JIRA_COMMENT
+
+    {color:green}+1 system test framework{color}.  The patch passed system test framework compile."
+  return 0
+}
+
+###############################################################################
+### Submit a comment to the defect's Jira
+submitJiraComment () {
+  local result=$1
+  ### Do not output the value of JIRA_COMMENT_FOOTER when run by a developer
+  if [[  $JENKINS == "false" ]] ; then
+    JIRA_COMMENT_FOOTER=""
+  fi
+  if [[ $result == 0 ]] ; then
+    comment="{color:green}+1 overall{color}.  $JIRA_COMMENT
+
+$JIRA_COMMENT_FOOTER"
+  else
+    comment="{color:red}-1 overall{color}.  $JIRA_COMMENT
+
+$JIRA_COMMENT_FOOTER"
+  fi
+  ### Output the test result to the console
+  echo "
+
+
+
+$comment"  
+
+  if [[ $JENKINS == "true" ]] ; then
+    echo ""
+    echo ""
+    echo "======================================================================"
+    echo "======================================================================"
+    echo "    Adding comment to Jira."
+    echo "======================================================================"
+    echo "======================================================================"
+    echo ""
+    echo ""
+    ### Update Jira with a comment
+    export USER=hudson
+#    $JIRACLI -s https://issues.apache.org/jira -a addcomment -u hadoopqa -p $JIRA_PASSWD --comment "$comment" --issue $defect
+#    $JIRACLI -s https://issues.apache.org/jira -a logout -u hadoopqa -p $JIRA_PASSWD
+  fi
+}
+
+###############################################################################
+### Cleanup files
+cleanupAndExit () {
+  local result=$1
+  if [[ $JENKINS == "true" ]] ; then
+    if [ -e "$PATCH_DIR" ] ; then
+      mv $PATCH_DIR $BASEDIR
+    fi
+  fi
+  echo ""
+  echo ""
+  echo "======================================================================"
+  echo "======================================================================"
+  echo "    Finished build."
+  echo "======================================================================"
+  echo "======================================================================"
+  echo ""
+  echo ""
+  exit $result
+}
+
+###############################################################################
+###############################################################################
+###############################################################################
+
+JIRA_COMMENT=""
+JIRA_COMMENT_FOOTER="Console output: $BUILD_URL/console
+
+This message is automatically generated."
+
+### Check if arguments to the script have been specified properly or not
+parseArgs $@
+cd $BASEDIR
+
+checkout
+RESULT=$?
+if [[ $JENKINS == "true" ]] ; then
+  if [[ $RESULT != 0 ]] ; then
+    exit 100
+  fi
+fi
+setup
+checkAuthor
+RESULT=$?
+checkTests
+(( RESULT = RESULT + $? ))
+applyPatch
+if [[ $? != 0 ]] ; then
+  submitJiraComment 1
+  cleanupAndExit 1
+fi
+
+checkAntiPatterns
+(( RESULT = RESULT + $? ))
+# checkBuildWithHadoopVersions
+# (( RESULT = RESULT + $? ))
+checkJavacWarnings
+(( RESULT = RESULT + $? ))
+# checkProtocErrors
+# (( RESULT = RESULT + $? ))
+checkJavadocWarnings
+(( RESULT = RESULT + $? ))
+# checkCheckstyleErrors
+# (( RESULT = RESULT + $? ))
+checkInterfaceAudience
+(( RESULT = RESULT + $? ))
+# checkFindbugsWarnings
+# (( RESULT = RESULT + $? ))
+checkReleaseAuditWarnings
+(( RESULT = RESULT + $? ))
+checkLineLengths
+(( RESULT = RESULT + $? ))
+# checkSiteXml
+# (( RESULT = RESULT + $?))
+### Do not call these when run by a developer 
+if [[ $JENKINS == "true" ]] ; then
+  runTests
+  (( RESULT = RESULT + $? ))
+JIRA_COMMENT_FOOTER="Test results: $BUILD_URL/testReport/
+$JIRA_COMMENT_FOOTER"
+fi
+submitJiraComment $RESULT
+cleanupAndExit $RESULT