You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@beam.apache.org by "ASF GitHub Bot (Jira)" <ji...@apache.org> on 2020/04/30 18:56:00 UTC

[jira] [Work logged] (BEAM-8307) NPE in Calcite dialect when input PCollection has logical type in schema, from JdbcIO Transform

     [ https://issues.apache.org/jira/browse/BEAM-8307?focusedWorklogId=429198&page=com.atlassian.jira.plugin.system.issuetabpanels:worklog-tabpanel#worklog-429198 ]

ASF GitHub Bot logged work on BEAM-8307:
----------------------------------------

                Author: ASF GitHub Bot
            Created on: 30/Apr/20 18:55
            Start Date: 30/Apr/20 18:55
    Worklog Time Spent: 10m 
      Work Description: rahul8383 opened a new pull request #11581:
URL: https://github.com/apache/beam/pull/11581


   … type in schema, from JdbcIO Transform
   
   When SqlTransform.query()(BamSql) PTransform is used with JdbcIO, where JdbcIO has logical types, an NPE is thrown in BeamSql when converting Beam Schema to Calcite RelDataType.
   
   This PR handles converting JdbcIO logical types to Calcite RelDataType.
   
   ------------------------
   
   Thank you for your contribution! Follow this checklist to help us incorporate your contribution quickly and easily:
   
    - [ ] [**Choose reviewer(s)**](https://beam.apache.org/contribute/#make-your-change) and mention them in a comment (`R: @username`).
    - [ ] Format the pull request title like `[BEAM-XXX] Fixes bug in ApproximateQuantiles`, where you replace `BEAM-XXX` with the appropriate JIRA issue, if applicable. This will automatically link the pull request to the issue.
    - [ ] Update `CHANGES.md` with noteworthy changes.
    - [ ] If this contribution is large, please file an Apache [Individual Contributor License Agreement](https://www.apache.org/licenses/icla.pdf).
   
   See the [Contributor Guide](https://beam.apache.org/contribute) for more tips on [how to make review process smoother](https://beam.apache.org/contribute/#make-reviewers-job-easier).
   
   Post-Commit Tests Status (on master branch)
   ------------------------------------------------------------------------------------------------
   
   Lang | SDK | Apex | Dataflow | Flink | Gearpump | Samza | Spark
   --- | --- | --- | --- | --- | --- | --- | ---
   Go | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Go/lastCompletedBuild/) | --- | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Go_VR_Flink/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Go_VR_Flink/lastCompletedBuild/) | --- | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Go_VR_Spark/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Go_VR_Spark/lastCompletedBuild/)
   Java | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Apex/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Apex/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Java11/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Dataflow_Java11/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink_Java11/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Flink_Java11/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Flink_Batch/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Flink_Batch/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Flink_Streaming/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Flink_Streaming/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Gearpump/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Gearpump/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Samza/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Samza/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Spark/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_Spark/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Spark_Batch/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_PVR_Spark_Batch/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_SparkStructuredStreaming/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Java_ValidatesRunner_SparkStructuredStreaming/lastCompletedBuild/)
   Python | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Python2/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python2/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Python35/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python35/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Python36/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python36/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Python37/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python37/lastCompletedBuild/) | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Py_VR_Dataflow/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Py_VR_Dataflow/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Py_VR_Dataflow_V2/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Py_VR_Dataflow_V2/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Py_ValCont/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Py_ValCont/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Python2_PVR_Flink_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Python2_PVR_Flink_Cron/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PostCommit_Python35_VR_Flink/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python35_VR_Flink/lastCompletedBuild/) | --- | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_Python_VR_Spark/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_Python_VR_Spark/lastCompletedBuild/)
   XLang | --- | --- | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_XVR_Flink/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_XVR_Flink/lastCompletedBuild/) | --- | --- | [![Build Status](https://builds.apache.org/job/beam_PostCommit_XVR_Spark/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PostCommit_XVR_Spark/lastCompletedBuild/)
   
   Pre-Commit Tests Status (on master branch)
   ------------------------------------------------------------------------------------------------
   
   --- |Java | Python | Go | Website
   --- | --- | --- | --- | ---
   Non-portable | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Java_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Java_Cron/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Python_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Python_Cron/lastCompletedBuild/)<br>[![Build Status](https://builds.apache.org/job/beam_PreCommit_PythonLint_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_PythonLint_Cron/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Go_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Go_Cron/lastCompletedBuild/) | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Website_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Website_Cron/lastCompletedBuild/) 
   Portable | --- | [![Build Status](https://builds.apache.org/job/beam_PreCommit_Portable_Python_Cron/lastCompletedBuild/badge/icon)](https://builds.apache.org/job/beam_PreCommit_Portable_Python_Cron/lastCompletedBuild/) | --- | ---
   
   See [.test-infra/jenkins/README](https://github.com/apache/beam/blob/master/.test-infra/jenkins/README.md) for trigger phrase, status and link of all Jenkins jobs.
   


----------------------------------------------------------------
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.

For queries about this service, please contact Infrastructure at:
users@infra.apache.org


Issue Time Tracking
-------------------

            Worklog Id:     (was: 429198)
    Remaining Estimate: 0h
            Time Spent: 10m

> NPE in Calcite dialect when input PCollection has logical type in schema, from JdbcIO Transform
> -----------------------------------------------------------------------------------------------
>
>                 Key: BEAM-8307
>                 URL: https://issues.apache.org/jira/browse/BEAM-8307
>             Project: Beam
>          Issue Type: Bug
>          Components: dsl-sql, io-java-jdbc
>    Affects Versions: 2.15.0
>            Reporter: Rahul Patwari
>            Assignee: Rahul Patwari
>            Priority: Major
>         Attachments: exception_sqlTransform.txt
>
>          Time Spent: 10m
>  Remaining Estimate: 0h
>
> An exception is thrown when SqlTransform is used with JdbcIO.
> Schema of the Source Table:
> _CREATE TABLE actor (_
>  _actor_id SMALLINT UNSIGNED NOT NULL AUTO_INCREMENT,_
>  _first_name VARCHAR(45) NOT NULL,_
>  _last_name VARCHAR(45) NOT NULL,_
>  _last_update TIMESTAMP NOT NULL DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,_
>  _PRIMARY KEY (actor_id),_
>  _KEY idx_actor_last_name (last_name)_
>  _)ENGINE=InnoDB DEFAULT CHARSET=utf8;_ 
>  
> Many of the Jdbc Types are converted to Logical_Types in Beam.
> Refer: [https://github.com/apache/beam/blob/113461a4275eb28a101e416897ccd607aa51f83f/sdks/java/io/jdbc/src/main/java/org/apache/beam/sdk/io/jdbc/SchemaUtil.java#L102]
> The initial observation is that this code: [https://github.com/apache/beam/blob/113461a4275eb28a101e416897ccd607aa51f83f/sdks/java/extensions/sql/src/main/java/org/apache/beam/sdk/extensions/sql/impl/utils/CalciteUtils.java#L207] is returning null.
>  
> PFA [^exception_sqlTransform.txt]



--
This message was sent by Atlassian Jira
(v8.3.4#803005)