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Posted to issues@flink.apache.org by "Till Rohrmann (JIRA)" <ji...@apache.org> on 2017/05/19 15:20:04 UTC
[jira] [Assigned] (FLINK-6641) HA recovery on YARN fails due to
missing files in HDFS
[ https://issues.apache.org/jira/browse/FLINK-6641?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Till Rohrmann reassigned FLINK-6641:
------------------------------------
Assignee: Till Rohrmann
> HA recovery on YARN fails due to missing files in HDFS
> ------------------------------------------------------
>
> Key: FLINK-6641
> URL: https://issues.apache.org/jira/browse/FLINK-6641
> Project: Flink
> Issue Type: Bug
> Components: Distributed Coordination, YARN
> Affects Versions: 1.3.0
> Reporter: Robert Metzger
> Assignee: Till Rohrmann
> Priority: Blocker
>
> While testing the 1.3 RC1, I was unable to recovery from a JobManager failure.
> The following error messages appear in the JobManager that is started by YARN:
> {code}
> 2017-05-19 14:41:38,030 INFO org.apache.flink.runtime.webmonitor.JobManagerRetriever - New leader reachable under akka.tcp://flink@permanent-qa-cluster-i7c9.c.astral-sorter-757.internal:36528/user/jobmanager:6539dc04-d7fe-4f85-a0b6-09bfb0de8a58.
> 2017-05-19 14:41:38,033 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Resource Manager associating with leading JobManager Actor[akka://flink/user/jobmanager#1602741108] - leader session 6539dc04-d7fe-4f85-a0b6-09bfb0de8a58
> 2017-05-19 14:41:38,033 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Requesting new TaskManager container with 1024 megabytes memory. Pending requests: 1
> 2017-05-19 14:41:38,781 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Received new container: container_1494870922226_0061_02_000002 - Remaining pending container requests: 0
> 2017-05-19 14:41:38,782 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Launching TaskManager in container ContainerInLaunch @ 1495204898782: Container: [ContainerId: container_1494870922226_0061_02_000002, NodeId: permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8041, NodeHttpAddress: permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8042, Resource: <memory:1024, vCores:1>, Priority: 0, Token: Token { kind: ContainerToken, service: 10.240.0.32:8041 }, ] on host permanent-qa-cluster-d3iz.c.astral-sorter-757.internal
> 2017-05-19 14:41:38,788 INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Opening proxy : permanent-qa-cluster-d3iz.c.astral-sorter-757.internal:8041
> 2017-05-19 14:41:44,284 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Container container_1494870922226_0061_02_000002 failed, with a TaskManager in launch or registration. Exit status: -1000
> 2017-05-19 14:41:44,284 INFO org.apache.flink.yarn.YarnFlinkResourceManager - Diagnostics for container container_1494870922226_0061_02_000002 in state COMPLETE : exitStatus=-1000 diagnostics=File does not exist: hdfs://nameservice1/user/robert/.flink/application_1494870922226_0061/cf9287fe-ac75-4066-a648-91787d946890-taskmanager-conf.yaml
> java.io.FileNotFoundException: File does not exist: hdfs://nameservice1/user/robert/.flink/application_1494870922226_0061/cf9287fe-ac75-4066-a648-91787d946890-taskmanager-conf.yaml
> at org.apache.hadoop.hdfs.DistributedFileSystem$19.doCall(DistributedFileSystem.java:1219)
> at org.apache.hadoop.hdfs.DistributedFileSystem$19.doCall(DistributedFileSystem.java:1211)
> at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
> at org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1211)
> at org.apache.hadoop.yarn.util.FSDownload.copy(FSDownload.java:251)
> at org.apache.hadoop.yarn.util.FSDownload.access$000(FSDownload.java:61)
> at org.apache.hadoop.yarn.util.FSDownload$2.run(FSDownload.java:359)
> at org.apache.hadoop.yarn.util.FSDownload$2.run(FSDownload.java:357)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
> at org.apache.hadoop.yarn.util.FSDownload.call(FSDownload.java:356)
> at org.apache.hadoop.yarn.util.FSDownload.call(FSDownload.java:60)
> at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
> at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> {code}
> and
> {code}
> 2017-05-19 14:41:48,133 INFO org.apache.flink.yarn.YarnJobManager - Submitting recovered job 35df3b24209e9ebea12407e6747a746c.
> 2017-05-19 14:41:48,133 INFO org.apache.flink.yarn.YarnJobManager - Submitting job 35df3b24209e9ebea12407e6747a746c (CarTopSpeedWindowingExample) (Recovery).
> 2017-05-19 14:41:48,139 ERROR org.apache.flink.yarn.YarnJobManager - Failed to submit job 35df3b24209e9ebea12407e6747a746c (CarTopSpeedWindowingExample)
> org.apache.flink.runtime.client.JobSubmissionException: Cannot set up the user code libraries: Cannot get library with hash 935fb4229e27f166d5ba8912cd47974ad436af20
> at org.apache.flink.runtime.jobmanager.JobManager.org$apache$flink$runtime$jobmanager$JobManager$$submitJob(JobManager.scala:1267)
> at org.apache.flink.runtime.jobmanager.JobManager$$anonfun$handleMessage$1.applyOrElse(JobManager.scala:517)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
> at org.apache.flink.runtime.clusterframework.ContaineredJobManager$$anonfun$handleContainerMessage$1.applyOrElse(ContaineredJobManager.scala:100)
> at scala.PartialFunction$OrElse.apply(PartialFunction.scala:162)
> at org.apache.flink.runtime.LeaderSessionMessageFilter$$anonfun$receive$1.applyOrElse(LeaderSessionMessageFilter.scala:38)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
> at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
> at org.apache.flink.runtime.LogMessages$$anon$1.apply(LogMessages.scala:33)
> at org.apache.flink.runtime.LogMessages$$anon$1.apply(LogMessages.scala:28)
> at scala.PartialFunction$class.applyOrElse(PartialFunction.scala:118)
> at org.apache.flink.runtime.LogMessages$$anon$1.applyOrElse(LogMessages.scala:28)
> at akka.actor.Actor$class.aroundReceive(Actor.scala:467)
> at org.apache.flink.runtime.jobmanager.JobManager.aroundReceive(JobManager.scala:125)
> at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)
> at akka.actor.ActorCell.invoke(ActorCell.scala:487)
> at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)
> at akka.dispatch.Mailbox.run(Mailbox.scala:220)
> at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)
> at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
> at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
> at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
> at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
> Caused by: java.io.IOException: Cannot get library with hash 935fb4229e27f166d5ba8912cd47974ad436af20
> at org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerReferenceToBlobKeyAndGetURL(BlobLibraryCacheManager.java:264)
> at org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerTask(BlobLibraryCacheManager.java:117)
> at org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerJob(BlobLibraryCacheManager.java:89)
> at org.apache.flink.runtime.jobmanager.JobManager.org$apache$flink$runtime$jobmanager$JobManager$$submitJob(JobManager.scala:1262)
> ... 25 more
> Caused by: java.io.IOException: Failed to copy from blob store.
> at org.apache.flink.runtime.blob.BlobServer.getURL(BlobServer.java:387)
> at org.apache.flink.runtime.execution.librarycache.BlobLibraryCacheManager.registerReferenceToBlobKeyAndGetURL(BlobLibraryCacheManager.java:255)
> ... 28 more
> Caused by: java.io.FileNotFoundException: File does not exist: /shared/recovery-dir/application_1494870922226_0061/blob/cache/blob_935fb4229e27f166d5ba8912cd47974ad436af20
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1963)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1904)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1884)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1856)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:568)
> at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.getBlockLocations(AuthorizationProviderProxyClientProtocol.java:89)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:363)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2086)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2082)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2080)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
> at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
> at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1133)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1121)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1111)
> at org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:272)
> at org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:239)
> at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:232)
> at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1279)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:296)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:292)
> at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
> at org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:292)
> at org.apache.hadoop.fs.FileSystem.open(FileSystem.java:765)
> at org.apache.flink.runtime.fs.hdfs.HadoopFileSystem.open(HadoopFileSystem.java:404)
> at org.apache.flink.runtime.fs.hdfs.HadoopFileSystem.open(HadoopFileSystem.java:48)
> at org.apache.flink.runtime.blob.FileSystemBlobStore.get(FileSystemBlobStore.java:106)
> at org.apache.flink.runtime.blob.FileSystemBlobStore.get(FileSystemBlobStore.java:87)
> at org.apache.flink.runtime.blob.BlobServer.getURL(BlobServer.java:384)
> ... 29 more
> Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /shared/recovery-dir/application_1494870922226_0061/blob/cache/blob_935fb4229e27f166d5ba8912cd47974ad436af20
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1963)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1904)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1884)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1856)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:568)
> at org.apache.hadoop.hdfs.server.namenode.AuthorizationProviderProxyClientProtocol.getBlockLocations(AuthorizationProviderProxyClientProtocol.java:89)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:363)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:617)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1073)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2086)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2082)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2080)
> at org.apache.hadoop.ipc.Client.call(Client.java:1406)
> at org.apache.hadoop.ipc.Client.call(Client.java:1359)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:206)
> at com.sun.proxy.$Proxy9.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:206)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:186)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
> at com.sun.proxy.$Proxy10.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1131)
> ... 45 more
> {code}
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