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Posted to commits@ctakes.apache.org by tm...@apache.org on 2014/10/15 16:00:54 UTC
svn commit: r1632040 -
/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java
Author: tmill
Date: Wed Oct 15 14:00:53 2014
New Revision: 1632040
URL: http://svn.apache.org/r1632040
Log:
Remove references to assertion zoner.
Modified:
ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java
Modified: ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java?rev=1632040&r1=1632039&r2=1632040&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java (original)
+++ ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java Wed Oct 15 14:00:53 2014
@@ -34,11 +34,8 @@ import org.apache.uima.fit.factory.Analy
import org.apache.uima.fit.factory.ConfigurationParameterFactory;
import org.apache.uima.resource.ResourceInitializationException;
import org.cleartk.ml.CleartkAnnotator;
-import org.cleartk.ml.DataWriterFactory;
import org.cleartk.ml.jar.DirectoryDataWriterFactory;
import org.cleartk.ml.jar.GenericJarClassifierFactory;
-import org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeDataWriter;
-import org.mitre.medfacts.uima.ZoneAnnotator;
public class CreateAssertionDescriptor
{
@@ -81,23 +78,23 @@ public class CreateAssertionDescriptor
AnalysisEngineDescription assertionAttributeClearerAnnotator = AnalysisEngineFactory.createEngineDescription(ReferenceAnnotationsSystemAssertionClearer.class);
builder.add(assertionAttributeClearerAnnotator);
- String generalSectionRegexFileUri =
- "org/mitre/medfacts/zoner/section_regex.xml";
- AnalysisEngineDescription zonerAnnotator =
- AnalysisEngineFactory.createEngineDescription(ZoneAnnotator.class,
- ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
- generalSectionRegexFileUri
- );
- builder.add(zonerAnnotator);
-
- String mayoSectionRegexFileUri =
- "org/mitre/medfacts/uima/mayo_sections.xml";
- AnalysisEngineDescription mayoZonerAnnotator =
- AnalysisEngineFactory.createEngineDescription(ZoneAnnotator.class,
- ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
- mayoSectionRegexFileUri
- );
- builder.add(mayoZonerAnnotator);
+// String generalSectionRegexFileUri =
+// "org/mitre/medfacts/zoner/section_regex.xml";
+// AnalysisEngineDescription zonerAnnotator =
+// AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
+// ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
+// generalSectionRegexFileUri
+// );
+// builder.add(zonerAnnotator);
+//
+// String mayoSectionRegexFileUri =
+// "org/mitre/medfacts/uima/mayo_sections.xml";
+// AnalysisEngineDescription mayoZonerAnnotator =
+// AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
+// ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
+// mayoSectionRegexFileUri
+// );
+// builder.add(mayoZonerAnnotator);
AnalysisEngineDescription polarityAnnotator = AnalysisEngineFactory.createEngineDescription(PolarityCleartkAnalysisEngine.class); //, this.additionalParamemters);
@@ -183,23 +180,23 @@ public class CreateAssertionDescriptor
AnalysisEngineDescription assertionAttributeClearerAnnotator = AnalysisEngineFactory.createEngineDescription(ReferenceAnnotationsSystemAssertionClearer.class);
builder.add(assertionAttributeClearerAnnotator);
- String generalSectionRegexFileUri =
- "org/mitre/medfacts/zoner/section_regex.xml";
- AnalysisEngineDescription zonerAnnotator =
- AnalysisEngineFactory.createEngineDescription(ZoneAnnotator.class,
- ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
- generalSectionRegexFileUri
- );
- builder.add(zonerAnnotator);
-
- String mayoSectionRegexFileUri =
- "org/mitre/medfacts/uima/mayo_sections.xml";
- AnalysisEngineDescription mayoZonerAnnotator =
- AnalysisEngineFactory.createEngineDescription(ZoneAnnotator.class,
- ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
- mayoSectionRegexFileUri
- );
- builder.add(mayoZonerAnnotator);
+// String generalSectionRegexFileUri =
+// "org/mitre/medfacts/zoner/section_regex.xml";
+// AnalysisEngineDescription zonerAnnotator =
+// AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
+// ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
+// generalSectionRegexFileUri
+// );
+// builder.add(zonerAnnotator);
+//
+// String mayoSectionRegexFileUri =
+// "org/mitre/medfacts/uima/mayo_sections.xml";
+// AnalysisEngineDescription mayoZonerAnnotator =
+// AnalysisEngineFactory.createPrimitiveDescription(ZoneAnnotator.class,
+// ZoneAnnotator.PARAM_SECTION_REGEX_FILE_URI,
+// mayoSectionRegexFileUri
+// );
+// builder.add(mayoZonerAnnotator);
AnalysisEngineDescription polarityAnnotator = AnalysisEngineFactory.createEngineDescription(PolarityCleartkAnalysisEngine.class); //, this.additionalParamemters);
ConfigurationParameterFactory.addConfigurationParameters(