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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/19 14:12:11 UTC
svn commit: r940734 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/download/system-requirements/
content/download/system-requirements/index.html
Author: buildbot
Date: Thu Feb 19 13:12:10 2015
New Revision: 940734
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/download/system-requirements/
websites/staging/taverna/trunk/content/download/system-requirements/index.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
Propchange: websites/staging/taverna/trunk/cgi-bin/
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--- websites/staging/taverna/trunk/content/download/system-requirements/index.html (added)
+++ websites/staging/taverna/trunk/content/download/system-requirements/index.html Thu Feb 19 13:12:10 2015
@@ -0,0 +1,284 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - </title>
+
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+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
+ <link rel="stylesheet" href="/css/sticky-footer-navbar.css">
+ <link rel="stylesheet" href="/css/taverna.css">
+
+
+
+
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+
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+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+ <body>
+
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li class="dropdown">
+ <a href="/introduction/" data-toggle="dropdown" role="button" aria-expanded="false">Introduction<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/introduction/taverna-features">Taverna features</a></li>
+ <li><a href="/introduction/why-use-workflows">Why use workflows?</a></li>
+ <li><a href="/introduction/what-is-in-silico-experimentation">What is âin silicoâ experimentation?</a></li>
+ <li><a href="/introduction/what-is-a-workflow-management-system">What is a Workflow Management System?</a></li>
+ <li><a href="/introduction/how-can-taverna-help-me">How can Taverna help me?</a></li>
+ <li><a href="/introduction/services-in-taverna">Services in Taverna</a></li>
+ <li><a href="/introduction/related-projects">Related projects</a></li>
+ <li><a href="/introduction/chemistry-web-services">Chemistry-web-services</a></li>
+ <li><a href="/introduction/taverna-in-use">Taverna in use</a></li>
+ <li><a href="/introduction/works-with">Works with...</a></li>
+ <li><a href="/introduction/roadmap.html">Road Map</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/documentation" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Documentation<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/documentation/glossary">Glossary</a></li>
+ <li><a href="/documentation/quick-start-guide">Quick start guide</a></li>
+ <li><a href="/documentation/components">Components</a></li>
+ <li><a href="/documentation/interaction">Interactions</a></li>
+ <li><a href="/documentation/tutorials">Tutorials</a></li>
+ <li><a href="/documentation/videos">Videos</a></li>
+ <li><a href="/documentation/example-workflows">Example workflows</a></li>
+ <li><a href="/documentation/service-sets">Service sets</a></li>
+ <li><a href="/documentation/provenance">Provenance management</a></li>
+ <li><a href="/documentation/command-line">command-line</a></li>
+ <li><a href="/documentation/server">Taverna Server</a></li>
+ <li><a href="/documentation/taverna-player">Taverna Player</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/documentation/dataviewer-tool">DataViewer Tool</a></li>
+ <li><a href="/documentation/api-consumer-tool">API Consumer Tool</a></li>
+ <li><a href="/documentation/taverna-galaxy">Taverna 2-Galaxy</a></li>
+ <li><a href="/documentation/training-and-workshops">Training and workshops</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/download" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Download<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/download">Apache Taverna 3.x</a></li>
+ <li><a href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
+ </ul>
+ </li>
+ <li><a href="/code">Code</a></li>
+ <li class="dropdown">
+ <a href="/community" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Community<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/community#mailinglists">Mailing Lists</a></li>
+ <li><a href="/community#contribute">Contribute</a></li>
+ <li><a href="/community#reportbugs">Report a Bug</a></li>
+ </ul>
+ </li>
+ </ul>
+
+ <form >
+
+
+ <!--<input type="submit" id="submit" value="Search">-->
+ </form>
+
+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
+ <div class="form-group input-group">
+ <input type="text" name="q" id="query" placeholder="Search" class="form-control">
+ <span class="input-group-btn">
+ <button type="submit" class="btn btn-default">Search</button>
+ </span>
+ </div>
+ </form>
+
+ <ul class="nav navbar-nav navbar-right">
+ <li class="dropdown">
+ <a href="http://www.apache.org/" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">ASF<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="http://www.apache.org/">Apache Software Foundation</a></li>
+ <li><a href="http://www.apache.org/foundation/how-it-works.html">How it works</a></li>
+ <li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+ <li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+ <li><a href="http://incubator.apache.org/projects/taverna.html">Taverna Incubation Status</a></li>
+ </ul>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div><!--/.container-->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1></h1>
+ <div id="content"><div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
+Taverna is transitioning to the Apache Incubator.
+Currently there is no Apache approved distribution.
+</div>
+
+<h2 id="operating-system">Operating system</h2>
+<p>Taverna <a href="/download/workbench">Workbench</a> and <a href="download/command-line-tool">Command Line</a>
+ are available either in platform-specific or platform-neutral distributions.
+We generally recommend the platform-specific distributions as they include any required
+ third-party software.</p>
+<p>Platform-specific distributions are available for <small>(and tested on)</small>:</p>
+<ul>
+<li>Windows 64-bit (.exe installer) <small>(7, 8, 8.1)</small></li>
+<li>Windows 32-bit (.exe installer) <small>(7)</small></li>
+<li>Mac OS X 64-bit (.dmg disk image) <small>(10.8, 10.9)</small></li>
+<li>Linux 64-bit Debian-based (.deb package) <small>(Ubuntu 12.04.4, Bio-Linux 7)</small></li>
+<li>Linux 64-bit Redhat-based (.rpm package) <small>(Fedora 20)</small></li>
+</ul>
+<p>Platform-neutral distributions are available as:</p>
+<ul>
+<li>Zip file</li>
+</ul>
+<p>The platform-neutral distribution has <a href="#standalone">additional system requirements</a>.</p>
+<h2 id="linux-libgnome">Linux: libgnome</h2>
+<p>If you want to use the
+ <a href="http://dev.mygrid.org.uk/wiki/display/taverna/Interaction+service">Interaction service</a>
+ from Taverna, for some versions of Linux it may be necessary to install the <strong>libgnome-2.0</strong>
+ package or equivalent.
+This library is required to allows Taverna to open pages in your preferred Web browser and
+ connect to the interactive service being called from the workflow.</p>
+<h2 id="memory">Memory</h2>
+<p>It is a good idea for your machine to have at least 2GB of RAM.
+Taverna will run with less memory than that, but its performance may be affected.</p>
+<p>The Taverna Workbench installations for 64-bit operating systems will use by default up to
+1 GB of working memory, plus up to 400 MB used by the Java runtime;
+while installations for 32-bit operating systems and platform-independent installations will
+use up to 700 MB of working memory, plus up to 200 MB used by Java runtime.</p>
+<blockquote>
+<p>If Taverna happens to run out of memory while running a workflow with
+large data or large number of data, you can set Taverna to store data
+in a database by going to <strong>Preferences -> Data and Provenance</strong> and
+removing the tick for <strong>âIn-memory storageâ</strong>.
+This will reduce execution speed slightly, but should consume less memory.
+Also remember to remove any old runs you are no longer interested in.
+<a href="http://www.mygrid.org.uk/dev/wiki/display/taverna/Data+and+provenance+preferences">User guide: Data and provenance preferences</a>
+has more details on the data settings in Taverna.</p>
+</blockquote>
+<p>If you need to increase the available memory, for Windows and Linux edit the
+ <em>taverna.vmoptions</em> (and <em>executeworkflow.vmoptions</em>) file inside Taverna's installation
+ directory (which might require administrator privileges).
+You can then replace <em>-Xmx700m</em> or <em>-Xmx1g</em> with say <em>-Xmx1500m</em> to use 1.5 GB.
+For OS X, you would need to modify the <em>Info.plist</em> file
+ (right click on Taverna application in Finder and select <strong>Show Package Content</strong>
+ and go inside the application bundle to find <em>Contents/Info.plist</em>) and change the same
+ parameter under JavaVM using the <em>Property List Editor</em>.
+For platform-neutral Taverna installations not using <em><em>.vmoptions</em> you may instead have to
+ modify the </em>taverna.sh/taverna.bat<em> (Windows) and </em>executeworkflow.bat/executeworkflow.sh*.</p>
+<p><a href="http://dev.mygrid.org.uk/wiki/display/taverna/Memory+allocation">User guide: Memory allocation</a>
+ has more details on configuring memory allocation.</p>
+<p><a name=#standalone></a></p>
+<h2 id="taverna-standalone-requirements">Taverna Standalone requirements</h2>
+<p>Java and Graphviz are included in the platform specific downloads but not in the zip downloads.</p>
+<h3 id="java">Java</h3>
+<p>If you download a platform-neutral Taverna installation, you will need to install Java 7 or
+ higher.</p>
+<p>For Oracle's Java 7 you would have also have to install the
+ <a href="http://www.oracle.com/technetwork/java/javase/downloads/jce-7-download-432124.html">Java Cryptography Extension</a>
+ separately.</p>
+<p>For <a href="http://openjdk.java.net/">OpenJDK 7</a>, you do not need to install the Java Cryptography
+ Extension as it is already included.
+ On Linux, <em>apt-get install openjdk-7-jdk</em> or equivalent is usually sufficient.</p>
+<blockquote>
+<p>Taverna 2.5 has not been tested with Java 8.</p>
+<p>On newer versions of <strong>Mac OS X</strong>, Taverna Workbench might need the
+ <a href="http://xquartz.macosforge.org/landing/">XQuarts</a> shared X11 libraries to be installed.</p>
+</blockquote>
+<h3 id="graphviz">GraphViz</h3>
+<p>If you download the platform-neutral Taverna Workbench installation,
+ it includes binaries of the Graphviz tool,
+ which is used for generating workflow diagrams in Taverna.
+Binaries are included for OS X, Linux x86/x64 and Windows within the <em>bin</em> folder.</p>
+<p>In most cases Taverna should be able to pick up the location of the Graphviz binary <em>dot</em>
+ from the download after you have installed it.
+If this is not the case, see
+ <a href="http://www.mygrid.org.uk/dev/wiki/display/taverna/Workbench+preferences">User guide: Workbench preferences</a>
+ on how to configure the location of <em>dot</em> executable in Taverna Workbench.</p></div>
+
+ </div>
+
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+ <div class="container">
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+ Copyright © 2014-2015 The Apache Software Foundation, Licensed under the
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+ Apache and the Apache feather logo are trademarks of The Apache Software Foundation.
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