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Posted to commits@airavata.apache.org by sm...@apache.org on 2015/08/03 05:41:25 UTC
[03/13] airavata git commit: Cleaning up distribution - AIRAVATA-1794
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/NOTICE
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-Apache Airavata
-Copyright 2013 The Apache Software Foundation
-
-This product includes software developed at
-The Apache Software Foundation (http://www.apache.org/).
-
-===============================================================================
-Apache Xerces Java Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
- - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
- - voluntary contributions made by Paul Eng on behalf of the
- Apache Software Foundation that were originally developed at iClick, Inc.,
- software copyright (c) 1999.
-
-================================================================================
-Apache XmlBeans Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
- Aside from contributions to the Apache XMLBeans project, this
- software also includes:
-
- - one or more source files from the Apache Xerces-J and Apache Axis
- products, Copyright (c) 1999-2003 Apache Software Foundation
-
- - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
- Consortium (Massachusetts Institute of Technology, European Research
- Consortium for Informatics and Mathematics, Keio University)
-
- - resolver.jar from Apache Xml Commons project,
- Copyright (c) 2001-2003 Apache Software Foundation
-
- - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
- Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
-
- - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
- Copyright 2005 BEA under the terms of the Apache Software License 2.0
-
-=========================================================================================
-Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
-
-Portions Copyright 2006 International Business Machines Corp.
-Portions Copyright 2005-2007 WSO2, Inc.
-
-This product also includes schemas and specification developed by:
-- the W3C consortium (http://www.w3c.org)
-
-This product also includes WS-* schemas developed by International
-Business Machines Corporation, Microsoft Corporation, BEA Systems,
-TIBCO Software, SAP AG, Sonic Software, and VeriSign
-
-This product also includes a WSDL developed by salesforce.com
-- Copyright 1999-2006 salesforce.com, inc.
-Portions of the included xmlbeans library were originally based on the following:
-- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
-
-====================================================================================
-Apache Derby Notice:
-
-Portions of Derby were originally developed by
-International Business Machines Corporation and are
-licensed to the Apache Software Foundation under the
-"Software Grant and Corporate Contribution License Agreement",
-informally known as the "Derby CLA".
-The following copyright notice(s) were affixed to portions of the code
-with which this file is now or was at one time distributed
-and are placed here unaltered.
-
-(C) Copyright 1997,2004 International Business Machines Corporation. All rights reserved.
-
-(C) Copyright IBM Corp. 2003.
-
-=======================
-
-The portion of the functionTests under 'nist' was originally
-developed by the National Institute of Standards and Technology (NIST),
-an agency of the United States Department of Commerce, and adapted by
-International Business Machines Corporation in accordance with the NIST
-Software Acknowledgment and Redistribution document at
-http://www.itl.nist.gov/div897/ctg/sql_form.htm
-
-========================
-
-The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
-java/stubs/jdbc3) were produced by trimming sources supplied by the
-Apache Harmony project. In addition, the Harmony SerialBlob and
-SerialClob implementations are used. The following notice covers the Harmony sources:
-
-Portions of Harmony were originally developed by
-Intel Corporation and are licensed to the Apache Software
-Foundation under the "Software Grant and Corporate Contribution
-License Agreement", informally known as the "Intel Harmony CLA".
-
-=============================================================================
-Apache Woden Notice:
-
- This product also includes software developed by :
-
- - IBM Corporation (http://www.ibm.com),
- WSDL4J was the initial code contribution for the Apache Woden
- project and some of the WSDL4J design and code has been reused.
- - The W3C Consortium (http://www.w3c.org),
- Common W3C XML Schema and DTD files are packaged with Apache Woden.
-
- Please read the different LICENSE files present in the root directory of
- this distribution.
-
-=========================================================================
-Woodstox Notice:
-
-This product includes software developed by the Woodstox Project
-(http://woodstox.codehaus.org/)
-
-This product currently only contains code developed by authors
-of specific components, as identified by the source code files.
-
-Since product implements StAX API, it has dependencies to StAX API
-classes.
-
-For additional credits (generally to people who reported problems)
-see CREDITS file.
-
-===========================================================================
-Apache xml-commons xml-apis Notice:
-
- Portions of this software were originally based on the following:
- - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
- - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
- - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
-
-================================================================================================
-Apache Xalan Notice:
-
-Portions of this software was originally based on the following:
- - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
- - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
- - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
- - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the
- Apache Software Foundation and was originally developed at Hewlett Packard Company.
-================================================================================================
-Apache OpenJPA Notice:
-
-OpenJPA includes software developed by the SERP project
-Copyright (c) 2002-2006, A. Abram White. All rights reserved.
-
-OpenJPA includes the persistence and orm schemas from the JPA specifications.
-Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
-OpenJPA elects to include this software in this distribution under the
-CDDL license. You can obtain a copy of the License at:
- https://glassfish.dev.java.net/public/CDDL+GPL.html
-The source code is available at:
- https://glassfish.dev.java.net/source/browse/glassfish/
-
-OpenJPA includes software written by Miroslav Nachev
-OpenJPA uses test code written by Charles Tillman.
-================================================================================================
-Apache XmlSchema Notice:
-
-Portions Copyright 2006 International Business Machines Corp.
-================================================================================================
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/README
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/README b/modules/distribution/xbaya-gui/src/main/resources/README
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-Apache Airavata XBaya - README.txt
-Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
---------------------------------------------------------------------------------
-
-About
-=====
-Apache Airavata, a software framework to executing and managing computational jobs on
-distributed computing resources including local clusters, supercomputers, national grids,
-academic and commercial clouds. Airavata can be used as individual components or
-as an integrated solution to build science gateways or general-purpose distributed
-application and workflow management systems. Users can use Airavata back end services
-and build gadgets to deploy in open social containers such as Apache Rave and modify them
-to suit their needs. Airavata builds on general concepts of service oriented computing,
-distributed messaging, and workflow composition and orchestration.
-
-This distribution is a client gui application capable of composing workflows, application
-descriptors & communicating with the airavata server to persist user data, run & monitor
-experiments and analyze the results.
-
-Release Notes
-=============
-0.11 is the tenth release of Airavata (skipped 0.1-INCUBATNG). This release focuses GFac rearchitecturing and more GFac level changes. For detailed tasks list, please see RELEASE_NOTES.
-
-Building from source
-====================
-For brief installation instructions, see INSTALL
-For detailed installation and further instructions refer http://airavata.apache.org/ - Documentation section in left hand panel. Step by step with proper documentation are provided.
-
-Known Issues in This Release
-============================
-This is the base release and is focused on a good foundation and less on features. This
-version is not recommended for production usage.
-
-Airavata XBaya Distribution Directory Structure
-================================================
-
- AIRAVATA_XBAYA
- ├── bin
- │ ├── airavata-client.properties
- │ ├── log4j.properties
- │ ├── setenv.bat
- │ ├── setenv.sh
- │ ├── xbaya-gui.bat
- │ └── xbaya-gui.sh
- ├── lib
- ├── samples
- ├── INSTALL
- ├── LICENSE
- ├── NOTICE
- └── README
-
-How to test and run samples
-===========================
-* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases should have passes.
-* The test cases are beyond unit level, they startup embedded services and run through basic workflow use cases.
-* To walk through Airavata features, follow "Airavata in Five Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* For intermediate level Airavata features, follow "Airavata in Ten Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
-
-Description of Directory Structure
-==================================
-
- - bin
- This contains the configuration files for Airavata XBaya & the scripts to run XBaya GUI Application.
-
- - samples
- This contains sample scripts to define the sample descriptor in http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-
- - lib
- This contains all the libraries required to run the client side code with the jars required to run XBaya GUI.
-
- - README
- This document.
-
- - INSTALL
- This document will contain information on installing Apache-Airavata XBaya.
-
-Other Available Distributions
-=============================
-
-Server Distributions
---------------------
-* Airavata Server
- The Airavata Server binary distribution allows you to run a standalone Airavata Server which includes all the airavata services
- shipped with a default derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
-
-* Airavata Server Web Application
- This is similar package as the Airavata Server but is distributed as the server Web Application archive.
- This war is compatible with Apache Tomcat application server. The war bundles all airavata services
- enabled by defualt to startup a derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
-
-Client Distributions
---------------------
-* Airavata XBaya
- The Airavata XBaya distribution is a client GUI application with features to register applications as web services, construct workflows,
- execute and monitor workflows and browse the generated results from the airavata registry.
-
-* Airavata XBaya JNLP
- The Airavata XBaya JNLP distribution is the simular GUI distribution but prepackeged to be ready to be deployed to
- a web server as a web start application. The GUI provides features to register applications as web services, construct workflows,
- execute and monitor workflows and browse the generated results from the airavata registry.
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/airavata-logo.gif
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http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.bat
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-rem Licensed to the Apache Software Foundation (ASF) under one
-rem or more contributor license agreements. See the NOTICE file
-rem distributed with this work for additional information
-rem regarding copyright ownership. The ASF licenses this file
-rem to you under the Apache License, Version 2.0 (the
-rem "License"); you may not use this file except in compliance
-rem with the License. You may obtain a copy of the License at
-rem
-rem http://www.apache.org/licenses/LICENSE-2.0
-rem
-rem Unless required by applicable law or agreed to in writing,
-rem software distributed under the License is distributed on an
-rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-rem KIND, either express or implied. See the License for the
-rem specific language governing permissions and limitations
-rem under the License.
-
-@echo off
-
-:checkJava
-if "%JAVA_HOME%" == "" goto noJavaHome
-if not exist "%JAVA_HOME%\bin\java.exe" goto noJavaHome
-goto initialize
-
-:noJavaHome
-echo You must set the JAVA_HOME environment variable before running Airavata.
-goto end
-
-:initialize
-if "%XBAYA_HOME%"=="" set XBAYA_HOME=%~sdp0..
-SET curDrive=%cd:~0,1%
-SET xBayaDrive=%XBAYA_HOME:~0,1%
-if not "%curDrive%" == "%xBayaDrive%" %xBayaDrive%:
-goto updateClasspath
-
-rem ----- update classpath -----------------------------------------------------
-:updateClasspath
-cd %XBAYA_HOME%
-set XBAYA_CLASSPATH=
-FOR %%C in ("%XBAYA_HOME%\lib\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\lib\%%~nC%%~xC
-
-:end
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/bin/setenv.sh
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-#!/bin/sh
-
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-
-
-# Get standard environment variables
-# if JAVA_HOME is not set we're not happy
-if [ -z "$JAVA_HOME" ]; then
- echo "You must set the JAVA_HOME variable before running Airavata Scripts."
- exit 1
-fi
-
-# OS specific support. $var _must_ be set to either true or false.
-cygwin=false
-os400=false
-case "`uname`" in
-CYGWIN*) cygwin=true;;
-OS400*) os400=true;;
-esac
-
-# resolve links - $0 may be a softlink
-PRG="$0"
-
-while [ -h "$PRG" ]; do
- ls=`ls -ld "$PRG"`
- link=`expr "$ls" : '.*-> \(.*\)$'`
- if expr "$link" : '.*/.*' > /dev/null; then
- PRG="$link"
- else
- PRG=`dirname "$PRG"`/"$link"
- fi
-done
-
-
-PRGDIR=`dirname "$PRG"`
-
-# Only set AIRAVATA_HOME if not already set
-[ -z "$AIRAVATA_HOME" ] && AIRAVATA_HOME=`cd "$PRGDIR/.." ; pwd`
-
-XBAYA_CLASSPATH=""
-
-
-
-for f in "$AIRAVATA_HOME"/lib/*.jar
-do
- XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
-done
-
-for f in "$AIRAVATA_HOME"/repository/services/*.jar
-do
- XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
-done
-
-XBAYA_CLASSPATH="$XBAYA_HOME":"$XBAYA_HOME/conf":"$XBAYA_CLASSPATH":"$CLASSPATH"
-
-
-
-
-export AIRAVATA_HOME
-export XBAYA_CLASSPATH
-
-
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat b/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.bat
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-@echo off
-rem Licensed to the Apache Software Foundation (ASF) under one
-rem or more contributor license agreements. See the NOTICE file
-rem distributed with this work for additional information
-rem regarding copyright ownership. The ASF licenses this file
-rem to you under the Apache License, Version 2.0 (the
-rem "License"); you may not use this file except in compliance
-rem with the License. You may obtain a copy of the License at
-rem
-rem http://www.apache.org/licenses/LICENSE-2.0
-rem
-rem Unless required by applicable law or agreed to in writing,
-rem software distributed under the License is distributed on an
-rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-rem KIND, either express or implied. See the License for the
-rem specific language governing permissions and limitations
-rem under the License.
-
-setlocal EnableDelayedExpansion
-call "%~dp0"setenv.bat
-
-cd "%XBAYA_HOME%\bin"
-"%JAVA_HOME%\bin\java.exe" %JAVA_OPTS% -classpath "%XBAYA_CLASSPATH%" org.apache.airavata.xbaya.XBaya %*
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/bin/xbaya-gui.sh
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-#!/bin/sh
-
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-
-. `dirname $0`/setenv.sh
-$JAVA_HOME/bin/java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
- org.apache.airavata.xbaya.XBaya $*
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/conf/log4j.properties
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-#
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements. See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership. The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License. You may obtain a copy of the License at
-#
-# http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied. See the License for the
-# specific language governing permissions and limitations
-# under the License.
-#
-
-# Set root category priority to INFO and its only appender to CONSOLE.
-log4j.rootCategory=INFO, CONSOLE,LOGFILE
-log4j.rootLogger=INFO, CONSOLE, LOGFILE
-
-# Set the enterprise logger priority to FATAL
-log4j.logger.org.apache.axis2.enterprise=FATAL
-log4j.logger.de.hunsicker.jalopy.io=FATAL
-log4j.logger.httpclient.wire.header=FATAL
-log4j.logger.org.apache.commons.httpclient=FATAL
-
-# CONSOLE is set to be a ConsoleAppender using a PatternLayout.
-log4j.appender.CONSOLE=org.apache.log4j.ConsoleAppender
-log4j.appender.CONSOLE.layout=org.apache.log4j.PatternLayout
-log4j.appender.CONSOLE.layout.ConversionPattern=[%p] %m%n
-
-# LOGFILE is set to be a File appender using a PatternLayout.
-log4j.appender.LOGFILE=org.apache.log4j.FileAppender
-log4j.appender.LOGFILE.File=../../bin/axis2.log
-log4j.appender.LOGFILE.Append=true
-log4j.appender.LOGFILE.layout=org.apache.log4j.PatternLayout
-log4j.appender.LOGFILE.layout.ConversionPattern=%d [%t] %-5p %c %x - %m%n
http://git-wip-us.apache.org/repos/asf/airavata/blob/51791dff/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL
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diff --git a/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL b/modules/distribution/xbaya-gui/src/main/resources/jnlp/INSTALL
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-Installing Apache Airavata XBaya 0.11
--------------------------------------
-
-Prerequisites
--------------
-Java 1.5 or later
-Maven (tested on v 3.0.2)
-
-Build Apache Airavata XBaya JNLP from Source
---------------------------------------------
-* Unzip/untar the source file or check out from svn.
-* cd to project folder and type
- $ mvn clean install
- Note: in order to skip tests use the command
- $ mvn clean install -Dmaven.test.skip=true
-* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/xbaya-gui/target/apache-airavata-xbaya-gui-<airavata-version>-jnlp.zip
-
-Installing the JNLP Distribution
---------------------------------
-* Extract the Apache Airavata XBaya JNLP distribution to a web accessible location
-* Update the the xbaya.jnlp file "codebase" with the web access location of the jnlp
- eg: <jnlp ... codebase="http://example-server.com/airavata/xbaya/" ...>
- ...
- ...
- </jnlp>
-
-Starting Apache Airavata XBaya JNLP
------------------------------------
-Using the web browser
- * Using a browser navigate to the url <JNLP-web-access-url>/xbaya.jnlp
- eg: http://example-server.com/airavata/xbaya/xbaya.jnlp
- * Following the web start download instructions to run XBaya
-
-Using the commandline
- * type for following command in the commandline to start the Airavata XBaya
- $ javaws <JNLP-web-access-url>/xbaya.jnlp
- eg: $ javaws http://example-server.com/airavata/xbaya/xbaya.jnlp
-
-Running Tests
--------------
-Once the binary is unzipped, instructions to run the tests should be followed from README
-
-Tutorials
-----------
-The airavata website has instructions for basic tutorials:
-* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
-* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
-* Advanced tutorial to provide understanding of how to run sample workflows distributed with Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html