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Posted to commits@ctakes.apache.org by cl...@apache.org on 2014/11/04 18:24:15 UTC
svn commit: r1636654 -
/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java
Author: clin
Date: Tue Nov 4 17:24:15 2014
New Revision: 1636654
URL: http://svn.apache.org/r1636654
Log:
allow event-property evaluation script to skip Train, and only serialize test patients' xmis
Modified:
ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java
Modified: ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java?rev=1636654&r1=1636653&r2=1636654&view=diff
==============================================================================
--- ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java (original)
+++ ctakes/trunk/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfEventProperties.java Tue Nov 4 17:24:15 2014
@@ -79,6 +79,9 @@ Evaluation_ImplBase<Map<String, Annotati
@Option
public boolean getUseGoldAttributes();
+
+ @Option
+ public boolean getSkipTrain();
}
private static final String DOC_TIME_REL = "docTimeRel";
private static final String CONTEXTUAL_MODALITY = "contextualModality";
@@ -107,7 +110,12 @@ Evaluation_ImplBase<Map<String, Annotati
options.getXMLDirectory(),
options.getXMLFormat(),
options.getXMIDirectory());
- evaluation.prepareXMIsFor(patientSets);
+ evaluation.skipTrain = options.getSkipTrain();
+ if(evaluation.skipTrain && options.getTest()){
+ evaluation.prepareXMIsFor(testItems);
+ }else{
+ evaluation.prepareXMIsFor(patientSets);
+ }
evaluation.logClassificationErrors(workingDir, "ctakes-event-property-errors");
Map<String, AnnotationStatistics<String>> stats = evaluation.trainAndTest(trainItems, testItems);
@@ -129,6 +137,7 @@ Evaluation_ImplBase<Map<String, Annotati
}
private Map<String, Logger> loggers = Maps.newHashMap();
+ protected boolean skipTrain=false;
public EvaluationOfEventProperties(
File baseDirectory,
@@ -144,6 +153,8 @@ Evaluation_ImplBase<Map<String, Annotati
@Override
protected void train(CollectionReader collectionReader, File directory) throws Exception {
+ // if(this.baseline) return;
+ if(this.skipTrain) return;
AggregateBuilder aggregateBuilder = this.getPreprocessorAggregateBuilder();
aggregateBuilder.add(CopyFromGold.getDescription(EventMention.class));
aggregateBuilder.add(CopyFromGold.getDescription(TimeMention.class));