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Posted to dev@climate.apache.org by "Lewis John McGibbney (JIRA)" <ji...@apache.org> on 2016/04/13 22:29:25 UTC
[jira] [Resolved] (CLIMATE-761) Error in easy-ocw install-ubuntu
Basemap stage
[ https://issues.apache.org/jira/browse/CLIMATE-761?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Lewis John McGibbney resolved CLIMATE-761.
------------------------------------------
Resolution: Fixed
This is resolved. Thanks folks.
> Error in easy-ocw install-ubuntu Basemap stage
> ----------------------------------------------
>
> Key: CLIMATE-761
> URL: https://issues.apache.org/jira/browse/CLIMATE-761
> Project: Apache Open Climate Workbench
> Issue Type: Bug
> Components: easy-ocw
> Affects Versions: 1.1
> Reporter: Lewis John McGibbney
> Fix For: 1.1
>
>
> When installing easy-ocw via the ubuntu script, I get the following
> {code}
> - Installing Basemap ...
> Traceback (most recent call last):
> File "setup.py", line 1, in <module>
> import sys, glob, os, numpy, subprocess
> ImportError: No module named numpy
> done
> {code}
> N.B. please note from the log below, when prompted "Press [Yy] to begin installation with the flag -e [RECOMMENDED] [OR] Press [Nn] to continue with the normal installation..." I pressed Y
> It looks like the anaconda installation of numpy is not being registered before we install Basemap. For reference the entire installation log is printed below.
> {code}
> lewismc@ocw-vm:/usr/local/climate/easy-ocw$ sudo ./install-ubuntu.sh
> ---------------------------------------------------------------------------
> Welcome to Easy OCW
> ---------------------------------------------------------------------------
> A number of dependencies for OCW will now be installed. Please check the wiki
> for a complete list of dependencies. Additionally, please read the wiki for
> useful installation guidelines and information that may be pertinent to your
> situation. All of this can be found at http://s.apache.org/3p2
> <-----------------------------[WARNING!]----------------------------------->
> It is highly recommended that you allow Easy OCW to install the dependencies
> into a virtualenv environment to ensure that your global Python install is
> not affected. If you're UNSURE, you should pass the -e flag
> to this script. If you aren't concerned, or you want to create your own
> virtualenv environment, then feel free to ignore this message.
> Press [Yy] to begin installation with the flag -e [RECOMMENDED]
> [OR]
> Press [Nn] to continue with the normal installation...Y
> Please specify a full path to where your OCW download is then press [ENTER] .../usr/local/climate
> Checking for pip ...
> Setting up a virtualenv ...
> - Installing virtualenv ...
> done
> - Creating a new environment ...
> done
> Installing Anaconda Python distribution ...
> *** NOTE *** When asked to update your PATH, you should respond YES.
> Press [ENTER] to continue ...
> - Downloading Anaconda ...
> done
> - Installing ...
> Welcome to Anaconda 1.9.2 (by Continuum Analytics, Inc.)
> In order to continue the installation process, please review the license
> agreement.
> Please, press ENTER to continue
> >>>
> ===================================
> Anaconda END USER LICENSE AGREEMENT
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> In addition to Continuum-licensed software, the Software product contains a
> collection of software packages from other sources ("Other Vendor Tools").
> Continuum may also distribute updates to these packages on an "as is" basis
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> Continuum reserves the right to change which Other Vendor Tools are
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> Attribution License
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> Export Regulations
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> No Implied Warranty or Fitness for Any Use
> ==========================================
> THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
> AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
> IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
> ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
> LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
> CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
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> POSSIBILITY OF SUCH DAMAGE
> Do you approve the license terms? [yes|no]
> [no] >>> yes
> Anaconda will now be installed into this location:
> /home/lewismc/anaconda
> - Press ENTER to confirm the location
> - Press CTRL-C to abort the installation
> - Or specify an different location below
> [/home/lewismc/anaconda] >>> /usr/local/anaconda
> PREFIX=/usr/local/anaconda
> installing: python-2.7.6-1 ...
> installing: conda-3.4.1-py27_0 ...
> installing: conda-build-1.3.1-py27_0 ...
> installing: _license-1.1-py27_0 ...
> installing: apptools-4.2.1-py27_0 ...
> installing: argcomplete-0.6.7-py27_0 ...
> installing: astropy-0.3.0-np18py27_0 ...
> installing: atom-0.3.7-py27_0 ...
> installing: beautiful-soup-4.3.1-py27_0 ...
> installing: binstar-0.4.4-py27_1 ...
> installing: biopython-1.63-np18py27_0 ...
> installing: bitarray-0.8.1-py27_0 ...
> installing: blaze-0.4.2-np18py27_0 ...
> installing: blz-0.6.1-np18py27_0 ...
> installing: bokeh-0.4.1-np18py27_0 ...
> installing: boto-2.25.0-py27_0 ...
> installing: cairo-1.12.2-2 ...
> installing: casuarius-1.1-py27_0 ...
> installing: cdecimal-2.3-py27_0 ...
> installing: chaco-4.4.1-np18py27_0 ...
> installing: colorama-0.2.7-py27_0 ...
> installing: configobj-4.7.2-py27_0 ...
> installing: cubes-0.10.2-py27_4 ...
> installing: curl-7.30.0-0 ...
> installing: cython-0.20.1-py27_0 ...
> installing: datashape-0.1.1-np18py27_0 ...
> installing: dateutil-2.1-py27_2 ...
> installing: disco-0.4.4-py27_0 ...
> installing: docutils-0.11-py27_0 ...
> installing: dynd-python-0.6.1-np18py27_0 ...
> installing: enable-4.3.0-np18py27_1 ...
> installing: enaml-0.9.1-py27_0 ...
> installing: envisage-4.4.0-py27_1 ...
> installing: erlang-R15B01-0 ...
> installing: flask-0.10.1-py27_1 ...
> installing: freetype-2.4.10-0 ...
> installing: future-0.11.2-py27_0 ...
> installing: gevent-1.0-py27_0 ...
> installing: gevent-websocket-0.9.2-py27_0 ...
> installing: gevent_zeromq-0.2.5-py27_3 ...
> installing: greenlet-0.4.2-py27_0 ...
> installing: grin-1.2.1-py27_1 ...
> installing: h5py-2.2.1-np18py27_0 ...
> installing: hdf5-1.8.9-1 ...
> installing: ipython-1.1.0-py27_0 ...
> installing: ipython-notebook-1.1.0-py27_1 ...
> installing: ipython-qtconsole-1.1.0-py27_1 ...
> installing: itsdangerous-0.23-py27_0 ...
> installing: jinja2-2.7.2-py27_0 ...
> installing: jpeg-8d-0 ...
> installing: keyring-3.3-py27_0 ...
> installing: kiwisolver-0.1.2-py27_0 ...
> installing: launcher-0.1.2-py27_0 ...
> installing: libdynd-0.6.1-0 ...
> installing: libnetcdf-4.2.1.1-1 ...
> installing: libpng-1.5.13-1 ...
> installing: libsodium-0.4.5-0 ...
> installing: libtiff-4.0.2-0 ...
> installing: libxml2-2.9.0-0 ...
> installing: libxslt-1.1.28-0 ...
> installing: llvm-3.3-0 ...
> installing: llvmpy-0.12.3-py27_0 ...
> installing: lxml-3.3.1-py27_0 ...
> installing: markupsafe-0.18-py27_0 ...
> installing: matplotlib-1.3.1-np18py27_0 ...
> installing: mayavi-4.3.1-np18py27_0 ...
> installing: mdp-3.3-np18py27_0 ...
> installing: mock-1.0.1-py27_0 ...
> installing: mpi4py-1.3-py27_0 ...
> installing: mpich2-1.4.1p1-0 ...
> installing: netcdf4-1.0.8-np18py27_0 ...
> installing: networkx-1.8.1-py27_0 ...
> installing: nltk-2.0.4-np18py27_0 ...
> installing: nose-1.3.0-py27_0 ...
> installing: numba-0.12.1-np18py27_0 ...
> installing: numexpr-2.3.1-np18py27_0 ...
> installing: numpy-1.8.0-py27_0 ...
> installing: opencv-2.4.6-np18py27_0 ...
> installing: openpyxl-1.8.2-py27_1 ...
> installing: openssl-1.0.1g-0 ...
> installing: pandas-0.13.1-np18py27_0 ...
> installing: patsy-0.2.1-np18py27_0 ...
> installing: pep8-1.4.6-py27_0 ...
> installing: pil-1.1.7-py27_0 ...
> installing: pip-1.5.2-py27_0 ...
> installing: pixman-0.26.2-0 ...
> installing: ply-3.4-py27_0 ...
> installing: psutil-1.2.1-py27_0 ...
> installing: py-1.4.20-py27_0 ...
> installing: py2cairo-1.10.0-py27_1 ...
> installing: pycosat-0.6.0-py27_0 ...
> installing: pycparser-2.10-py27_0 ...
> installing: pycrypto-2.6.1-py27_0 ...
> installing: pycurl-7.19.0-py27_2 ...
> installing: pyface-4.4.0-py27_0 ...
> installing: pyflakes-0.7.3-py27_0 ...
> installing: pygments-1.6-py27_0 ...
> installing: pykit-0.2.0-np18py27_0 ...
> installing: pyparsing-2.0.1-py27_0 ...
> installing: pysal-1.6.0-np18py27_1 ...
> installing: pysam-0.6-py27_0 ...
> installing: pyside-1.2.1-py27_0 ...
> installing: pytables-3.1.0-np18py27_0 ...
> installing: pytest-2.5.2-py27_0 ...
> installing: pytz-2013b-py27_0 ...
> installing: pyyaml-3.10-py27_0 ...
> installing: pyzmq-2.2.0.1-py27_1 ...
> installing: qt-4.8.5-0 ...
> installing: readline-6.2-2 ...
> installing: redis-2.6.9-0 ...
> installing: redis-py-2.9.1-py27_0 ...
> installing: requests-2.2.1-py27_0 ...
> installing: rope-0.9.4-py27_0 ...
> installing: scikit-image-0.9.3-np18py27_0 ...
> installing: scikit-learn-0.14.1-np18py27_1 ...
> installing: scipy-0.13.3-np18py27_0 ...
> installing: setuptools-2.2-py27_0 ...
> installing: shiboken-1.2.1-py27_0 ...
> installing: six-1.5.2-py27_0 ...
> installing: sphinx-1.2.1-py27_0 ...
> installing: spyder-2.2.5-py27_0 ...
> installing: spyder-app-2.2.5-py27_1 ...
> installing: sqlalchemy-0.9.2-py27_0 ...
> installing: sqlite-3.7.13-0 ...
> installing: ssl_match_hostname-3.4.0.2-py27_0 ...
> installing: statsmodels-0.5.0-np18py27_0 ...
> installing: sympy-0.7.4.1-py27_0 ...
> installing: system-5.8-1 ...
> installing: theano-0.6.0-np18py27_0 ...
> installing: tk-8.5.13-0 ...
> ▽
> installing: tornado-3.2.0-py27_0 ...
> installing: traits-4.4.0-py27_0 ...
> installing: traitsui-4.4.0-py27_0 ...
> installing: ujson-1.33-py27_0 ...
> installing: util-linux-2.21-0 ...
> installing: vtk-5.10.1-py27_1 ...
> installing: werkzeug-0.9.4-py27_0 ...
> installing: xlrd-0.9.2-py27_0 ...
> installing: xlsxwriter-0.5.2-py27_0 ...
> installing: xlwt-0.7.5-py27_0 ...
> installing: yaml-0.1.4-0 ...
> installing: zeromq-2.2.0-1 ...
> installing: zlib-1.2.7-0 ...
> installing: anaconda-1.9.2-np18py27_0 ...
> installing: _cache-0.0-x0 ...
> Python 2.7.6 :: Continuum Analytics, Inc.
> creating default environment...
> installation finished.
> Do you wish the installer to prepend the Anaconda install location
> to PATH in your /home/lewismc/.bashrc ? [yes|no]
> [no] >>> yes
> Prepending PATH=/usr/local/anaconda/bin to PATH in /home/lewismc/.bashrc
> A backup will be made to: /home/lewismc/.bashrc-anaconda.bak
> For this change to become active, you have to open a new terminal.
> Thank you for installing Anaconda!
> done
> Handling Basemap install ...
> - Downloading basemap ...
> done
> - Installing GEOS dependency ...
> libtool: install: warning: relinking `libgeos_c.la'
> done
> - Installing Basemap ...
> Traceback (most recent call last):
> File "setup.py", line 1, in <module>
> import sys, glob, os, numpy, subprocess
> ImportError: No module named numpy
> done
> Installing additional Python packages
> Updating PYTHONPATH with ocw executables ...
> done
> {code}
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