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Posted to dev@taverna.apache.org by Larry Akah <la...@gmail.com> on 2015/07/01 21:06:49 UTC
Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Great, i think its working. I have tested it from a REST client in chrome
and i receieved the 201 status code and the structure of the workflow. Find
here attached a screenshot of the post request.
Next up, i will be incorporating that into the app.
cheers
2015-06-30 6:39 GMT-05:00 Larry Akah <la...@gmail.com>:
> Ok, thanks.
> When i try that, i will send my feedback.
>
> Cheers
>
> 2015-06-30 6:35 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>:
>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA1
>>
>> Hello,
>>
>> I think the workflow can just be sent as it is. The request is JSON
>> formatted but the things inside the request don't have to be. The
>> t2flow/xml can be sent base64 encoded as they are.
>>
>> Cheers,
>>
>> Ian
>>
>> On 30/06/15 12:32, Larry Akah wrote:
>> > Hello, The workflows we get from myexperiment are formatted as xml
>> > or t2flow files. Do these absolutely need to be converted in json
>> > before posting or they can be sent as is?
>> >
>> > Cheers
>> >
>> > 2015-06-30 5:11 GMT-05:00 Ian Dunlop
>> > <ia...@manchester.ac.uk>:
>> >
>> > Hello,
>> >
>> > I've had a chat with the taverna player developer and you need to
>> > send a request as follows:
>> >
>> > POST to /workflows.json
>> >
>> > {"workflow" : { "document" :
>> > "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
>> > HERE"}}
>> >
>> > using HTTP basic auth with username:password base64 encoded in the
>> > Authorization header in the request e.g. Authorization: Basic
>> > QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
>> > the content type is not being respected for some reason.
>> >
>> >
>> > Here's an example using curl: curl -u your_username -X POST -H
>> > "Content-Type: application/json" -d@wf.json
>> > http://taverna-player-server/workflows.json
>> >
>> > where wf.json is the workflow file, this would then prompt for a
>> > passwor d. Hope this helps, please let us know how you get on.
>> >
>> > Cheers,
>> >
>> > Ian
>> >
>> > On 29/06/15 19:23, Larry Akah wrote:
>> >>>> I need some help with uploading a workflow to the player. The
>> >>>> API doesn't make it seem possible currently. How is it done?
>> >>>>
>> >>>> cheers
>> >>>>
>> >>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>:
>> >>>>
>> >>>>> Yes, its not yet ready. i still need to adjust that because
>> >>>>> at first , i was using the player to fetch workflows and
>> >>>>> derived a run skeleton to use for creating workflows. There
>> >>>>> is still some stuff that needs to be fixed there.
>> >>>>>
>> >>>>> Cheers
>> >>>>>
>> >>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>> >>>>> <Ia...@manchester.ac.uk>:
>> >>>>>
>> >>>>>> Hello,
>> >>>>>>
>> >>>>>> I got a ‘fatal’ error which the emulator reported when
>> >>>>>> clicking on ‘create run’:
>> >>>>>>
>> >>>>>> 06-29 15:25:39.554
>> >>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>> >>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>> >>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>> >>>>>> java.lang.NullPointerException: Attempt to invoke
>> >>>>>> virtual method 'void android.app.AlertDialog.show()' on a
>> >>>>>> null object reference at
>> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
>> lFr
>> >
>> >>>>>>
>> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>> >>>>>>
>> >>>>>>
>> > at
>> >>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
>> lFr
>> >
>> >>>>>>
>> agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>> >>>>>>
>> >>>>>>
>> > at android.os.AsyncTask.finish(AsyncTask.java:636)
>> >>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>> >>>>>> at
>> >>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
>> :65
>> >
>> >>>>>>
>> 3)
>> >>>>>>
>> >>>>>>
>> > at android.os.Handler.dispatchMessage(Handler.java:102)
>> >>>>>> at android.os.Looper.loop(Looper.java:135) at
>> >>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
>> >>>>>> at java.lang.reflect.Method.invoke(Native Method) at
>> >>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
>> >>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
>> Ini
>> >
>> >>>>>>
>> t.java:903)
>> >>>>>>
>> >>>>>>
>> > at
>> >>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> The device reported that the app had stopped running but in
>> >>>>>> fact it returned it to the workflows view but all the
>> >>>>>> workflows had disappeared from the view. I guess it’s
>> >>>>>> probably because this functionality is not ready yet but
>> >>>>>> I figured I should report it anyway.
>> >>>>>>
>> >>>>>> Cheers,
>> >>>>>>
>> >>>>>> Ian
>> >>>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> -- *Akah Larry N.H*
>> >>>>>
>> >>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>> >>>>> *www.iceteck.com*
>> >>>>>
>> >>>>> Developing technologies for emergence and sustainable
>> >>>>> development.
>> >>>>>
>> >>>>>
>> >>>>
>> >>>>
>> >>
>> >
>> >
>> >
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>
>
>
> --
> *Akah Larry N.H*
>
> *Lead Software Engineer @ GiftedMom*
> *Founder IceTeck Inc*
> *www.iceteck.com*
>
> Developing technologies for emergence and sustainable development.
>
>
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com*
Developing technologies for emergence and sustainable development.
RE: gsoc taverna mobile - creating a run causes 'fatal' error and
app stops.
Posted by Ian Dunlop <Ia...@manchester.ac.uk>.
Hello,
That’s good news. Can’t wait to see it working in the app – let me know when you have committed the code. By the way, I think the mailing list removes attachments, probably best to either add screenshots to JIRA or send links to the screenshots in something like dropbox or google drive.
Cheers,
Ian
From: Larry Akah [mailto:larryakah@gmail.com]
Sent: 01 July 2015 20:07
To: dev@taverna.incubator.apache.org
Subject: Re: gsoc taverna mobile - creating a run causes 'fatal' error and app stops.
Great, i think its working. I have tested it from a REST client in chrome and i receieved the 201 status code and the structure of the workflow. Find here attached a screenshot of the post request.
Next up, i will be incorporating that into the app.
cheers
2015-06-30 6:39 GMT-05:00 Larry Akah <la...@gmail.com>>:
Ok, thanks.
When i try that, i will send my feedback.
Cheers
2015-06-30 6:35 GMT-05:00 Ian Dunlop <ia...@manchester.ac.uk>>:
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hello,
I think the workflow can just be sent as it is. The request is JSON
formatted but the things inside the request don't have to be. The
t2flow/xml can be sent base64 encoded as they are.
Cheers,
Ian
On 30/06/15 12:32, Larry Akah wrote:
> Hello, The workflows we get from myexperiment are formatted as xml
> or t2flow files. Do these absolutely need to be converted in json
> before posting or they can be sent as is?
>
> Cheers
>
> 2015-06-30 5:11 GMT-05:00 Ian Dunlop
> <ia...@manchester.ac.uk>>:
>
> Hello,
>
> I've had a chat with the taverna player developer and you need to
> send a request as follows:
>
> POST to /workflows.json
>
> {"workflow" : { "document" :
> "data:application/octet-stream;base64,BASE64 ENCODED WORKFLOW GOES
> HERE"}}
>
> using HTTP basic auth with username:password base64 encoded in the
> Authorization header in the request e.g. Authorization: Basic
> QWxhZGRpbjpvcGVuIHNlc2FtZQ==. You have to specify .json because
> the content type is not being respected for some reason.
>
>
> Here's an example using curl: curl -u your_username -X POST -H
> "Content-Type: application/json" -d@wf.json<ma...@wf.json>
> http://taverna-player-server/workflows.json
>
> where wf.json is the workflow file, this would then prompt for a
> passwor d. Hope this helps, please let us know how you get on.
>
> Cheers,
>
> Ian
>
> On 29/06/15 19:23, Larry Akah wrote:
>>>> I need some help with uploading a workflow to the player. The
>>>> API doesn't make it seem possible currently. How is it done?
>>>>
>>>> cheers
>>>>
>>>> 2015-06-29 16:55 GMT+01:00 Larry Akah <la...@gmail.com>>:
>>>>
>>>>> Yes, its not yet ready. i still need to adjust that because
>>>>> at first , i was using the player to fetch workflows and
>>>>> derived a run skeleton to use for creating workflows. There
>>>>> is still some stuff that needs to be fixed there.
>>>>>
>>>>> Cheers
>>>>>
>>>>> 2015-06-29 16:34 GMT+01:00 Ian Dunlop
>>>>> <Ia...@manchester.ac.uk>>:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I got a ‘fatal’ error which the emulator reported when
>>>>>> clicking on ‘create run’:
>>>>>>
>>>>>> 06-29 15:25:39.554
>>>>>> 8216-8216/mobile.taverna.apache.org.tavernamobile
>>>>>> E/AndroidRuntime﹕ FATAL EXCEPTION: main Process:
>>>>>> mobile.taverna.apache.org.tavernamobile, PID: 8216
>>>>>> java.lang.NullPointerException: Attempt to invoke
>>>>>> virtual method 'void android.app.AlertDialog.show()' on a
>>>>>> null object reference at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:407)
>>>>>>
>>>>>>
> at
>>>>>> org.apache.taverna.mobile.fragments.workflowdetails.Workflowdetai
lFr
>
>>>>>>
agment$WorkflowRunTask.onPostExecute(WorkflowdetailFragment.java:289)
>>>>>>
>>>>>>
> at android.os.AsyncTask.finish(AsyncTask.java:636)
>>>>>> at android.os.AsyncTask.access$500(AsyncTask.java:177)
>>>>>> at
>>>>>> android.os.AsyncTask$InternalHandler.handleMessage(AsyncTask.java
:65
>
>>>>>>
3)
>>>>>>
>>>>>>
> at android.os.Handler.dispatchMessage(Handler.java:102)
>>>>>> at android.os.Looper.loop(Looper.java:135) at
>>>>>> android.app.ActivityThread.main(ActivityThread.java:5257)
>>>>>> at java.lang.reflect.Method.invoke(Native Method) at
>>>>>> java.lang.reflect.Method.invoke(Method.java:372) at
>>>>>> com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(Zygote
Ini
>
>>>>>>
t.java:903)
>>>>>>
>>>>>>
> at
>>>>>> com.android.internal.os.ZygoteInit.main(ZygoteInit.java:698)
>>>>>>
>>>>>>
>>>>>>
The device reported that the app had stopped running but in
>>>>>> fact it returned it to the workflows view but all the
>>>>>> workflows had disappeared from the view. I guess it’s
>>>>>> probably because this functionality is not ready yet but
>>>>>> I figured I should report it anyway.
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> Ian
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -- *Akah Larry N.H*
>>>>>
>>>>> *Lead Software Engineer @ GiftedMom* *Founder IceTeck Inc*
>>>>> *www.iceteck.com<http://www.iceteck.com>*
>>>>>
>>>>> Developing technologies for emergence and sustainable
>>>>> development.
>>>>>
>>>>>
>>>>
>>>>
>>
>
>
>
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--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com<http://www.iceteck.com>*
Developing technologies for emergence and sustainable development.
--
*Akah Larry N.H*
*Lead Software Engineer @ GiftedMom*
*Founder IceTeck Inc*
*www.iceteck.com<http://www.iceteck.com>*
Developing technologies for emergence and sustainable development.