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Posted to issues@iceberg.apache.org by GitBox <gi...@apache.org> on 2022/08/22 15:01:53 UTC
[GitHub] [iceberg] chajath opened a new issue, #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
chajath opened a new issue, #5611:
URL: https://github.com/apache/iceberg/issues/5611
### Apache Iceberg version
0.14.0 (latest release)
### Query engine
Spark
### Please describe the bug 🐞
Installed these packages as per the doc:
```
"software.amazon.awssdk:bundle:2.17.131",
"software.amazon.awssdk:url-connection-client:2.17.131",
```
When using S3FileIO:
```
sc.set("spark.sql.extensions", "org.apache.iceberg.spark.extensions.IcebergSparkSessionExtensions")
sc.set("spark.sql.catalog.iceberg", "org.apache.iceberg.spark.SparkCatalog")
...
sc.set("spark.sql.catalog.iceberg.io-impl", "org.apache.iceberg.aws.s3.S3FileIO")
```
I get the exception:
```
java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
at software.amazon.awssdk.core.util.SdkUserAgent.kotlinVersion(SdkUserAgent.java:173)
at software.amazon.awssdk.core.util.SdkUserAgent.getAdditionalJvmLanguages(SdkUserAgent.java:123)
at software.amazon.awssdk.core.util.SdkUserAgent.getUserAgent(SdkUserAgent.java:98)
at software.amazon.awssdk.core.util.SdkUserAgent.initializeUserAgent(SdkUserAgent.java:81)
at software.amazon.awssdk.core.util.SdkUserAgent.<init>(SdkUserAgent.java:51)
at software.amazon.awssdk.core.util.SdkUserAgent.create(SdkUserAgent.java:58)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.lambda$mergeGlobalDefaults$0(SdkDefaultClientBuilder.java:211)
at software.amazon.awssdk.utils.builder.SdkBuilder.applyMutation(SdkBuilder.java:61)
at software.amazon.awssdk.core.client.config.SdkClientConfiguration.merge(SdkClientConfiguration.java:66)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.mergeGlobalDefaults(SdkDefaultClientBuilder.java:207)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.syncClientConfiguration(SdkDefaultClientBuilder.java:158)
at software.amazon.awssdk.services.s3.DefaultS3ClientBuilder.buildClient(DefaultS3ClientBuilder.java:27)
at software.amazon.awssdk.services.s3.DefaultS3ClientBuilder.buildClient(DefaultS3ClientBuilder.java:22)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.build(SdkDefaultClientBuilder.java:133)
at org.apache.iceberg.aws.AwsClientFactories$DefaultAwsClientFactory.s3(AwsClientFactories.java:106)
at org.apache.iceberg.aws.s3.S3FileIO.client(S3FileIO.java:290)
at org.apache.iceberg.aws.s3.S3FileIO.newOutputFile(S3FileIO.java:129)
at org.apache.iceberg.io.OutputFileFactory.newOutputFile(OutputFileFactory.java:105)
at org.apache.iceberg.io.RollingFileWriter.newFile(RollingFileWriter.java:111)
at org.apache.iceberg.io.RollingFileWriter.openCurrentWriter(RollingFileWriter.java:102)
at org.apache.iceberg.io.RollingDataWriter.<init>(RollingDataWriter.java:44)
at org.apache.iceberg.io.ClusteredDataWriter.newWriter(ClusteredDataWriter.java:51)
at org.apache.iceberg.io.ClusteredWriter.write(ClusteredWriter.java:87)
at org.apache.iceberg.io.ClusteredDataWriter.write(ClusteredDataWriter.java:32)
at org.apache.iceberg.spark.source.SparkWrite$PartitionedDataWriter.write(SparkWrite.java:713)
at org.apache.iceberg.spark.source.SparkWrite$PartitionedDataWriter.write(SparkWrite.java:689)
at org.apache.spark.sql.execution.datasources.v2.DataWritingSparkTask$.$anonfun$run$1(WriteToDataSourceV2Exec.scala:442)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1538)
at org.apache.spark.sql.execution.datasources.v2.DataWritingSparkTask$.run(WriteToDataSourceV2Exec.scala:480)
at org.apache.spark.sql.execution.datasources.v2.V2TableWriteExec.$anonfun$writeWithV2$2(WriteToDataSourceV2Exec.scala:381)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
```
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[GitHub] [iceberg] chajath commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by GitBox <gi...@apache.org>.
chajath commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1223895068
Even with the latest `2.17.257` I see the issue:
```
java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
at software.amazon.awssdk.core.util.SdkUserAgent.kotlinVersion(SdkUserAgent.java:182)
at software.amazon.awssdk.core.util.SdkUserAgent.getAdditionalJvmLanguages(SdkUserAgent.java:132)
at software.amazon.awssdk.core.util.SdkUserAgent.getUserAgent(SdkUserAgent.java:116)
at software.amazon.awssdk.core.util.SdkUserAgent.initializeUserAgent(SdkUserAgent.java:95)
at software.amazon.awssdk.core.util.SdkUserAgent.(SdkUserAgent.java:65)
at software.amazon.awssdk.core.util.SdkUserAgent.create(SdkUserAgent.java:72)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.lambda$mergeGlobalDefaults$2(SdkDefaultClientBuilder.java:264)
at software.amazon.awssdk.utils.builder.SdkBuilder.applyMutation(SdkBuilder.java:61)
at software.amazon.awssdk.core.client.config.SdkClientConfiguration.merge(SdkClientConfiguration.java:66)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.mergeGlobalDefaults(SdkDefaultClientBuilder.java:260)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.syncClientConfiguration(SdkDefaultClientBuilder.java:174)
at software.amazon.awssdk.services.s3.DefaultS3ClientBuilder.buildClient(DefaultS3ClientBuilder.java:27)
at software.amazon.awssdk.services.s3.DefaultS3ClientBuilder.buildClient(DefaultS3ClientBuilder.java:22)
at software.amazon.awssdk.core.client.builder.SdkDefaultClientBuilder.build(SdkDefaultClientBuilder.java:145)
at org.apache.iceberg.aws.AwsClientFactories$DefaultAwsClientFactory.s3(AwsClientFactories.java:106)
at org.apache.iceberg.aws.s3.S3FileIO.client(S3FileIO.java:290)
at org.apache.iceberg.aws.s3.S3FileIO.newOutputFile(S3FileIO.java:129)
at org.apache.iceberg.io.OutputFileFactory.newOutputFile(OutputFileFactory.java:105)
at org.apache.iceberg.io.RollingFileWriter.newFile(RollingFileWriter.java:111)
at org.apache.iceberg.io.RollingFileWriter.openCurrentWriter(RollingFileWriter.java:102)
at org.apache.iceberg.io.RollingDataWriter.(RollingDataWriter.java:44)
at org.apache.iceberg.io.ClusteredDataWriter.newWriter(ClusteredDataWriter.java:51)
at org.apache.iceberg.io.ClusteredWriter.write(ClusteredWriter.java:87)
at org.apache.iceberg.io.ClusteredDataWriter.write(ClusteredDataWriter.java:32)
at org.apache.iceberg.spark.source.SparkWrite$PartitionedDataWriter.write(SparkWrite.java:713)
at org.apache.iceberg.spark.source.SparkWrite$PartitionedDataWriter.write(SparkWrite.java:689)
at org.apache.spark.sql.execution.datasources.v2.DataWritingSparkTask$.$anonfun$run$1(WriteToDataSourceV2Exec.scala:442)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1538)
at org.apache.spark.sql.execution.datasources.v2.DataWritingSparkTask$.run(WriteToDataSourceV2Exec.scala:480)
at org.apache.spark.sql.execution.datasources.v2.V2TableWriteExec.$anonfun$writeWithV2$2(WriteToDataSourceV2Exec.scala:381)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
at org.apache.spark.scheduler.Task.run(Task.scala:136)
at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:548)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1504)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:551)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at java.base/java.lang.Thread.run(Thread.java:829)
```
It doesn't happen always, so its hard to tell how to reliably reproduce the issue. But I saw it especially in a long-running job (say >10 hr-ish)
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[GitHub] [iceberg] Fokko commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by GitBox <gi...@apache.org>.
Fokko commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1222735571
Thanks for raising this @chajath. 0.14.0 builds with 0.14.0:
https://github.com/apache/iceberg/blob/0.14.x/versions.props#L27
I tested locally, and also it runs fine with `2.17.257` so not sure where this comes from. Do you have any steps to reproduce this?
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[GitHub] [iceberg] github-actions[bot] commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1475449440
This issue has been closed because it has not received any activity in the last 14 days since being marked as 'stale'
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[GitHub] [iceberg] chajath commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by GitBox <gi...@apache.org>.
chajath commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1224347305
Looking at it a bit further, I see that `url-connection-client` depends on the `utils` package, which has un-shaded function signatures. Depending on class load order, can this overrule shaded functions we find in the bundle package, thereby causing no such method issues? I would advise against using bundle at all and just import individual aws packages.
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[GitHub] [iceberg] jpohanka commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by "jpohanka (via GitHub)" <gi...@apache.org>.
jpohanka commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1556214928
I am using Iceberg version 1.2.0 and I have encountered the same issue and managed to solve it by using the approach suggested by @chajath - I have used the following SDK packages:
- `software.amazon.awssdk:core:2.20.18`
- `software.amazon.awssdk:glue:2.20.18`
- `software.amazon.awssdk:s3:2.20.18`
- `software.amazon.awssdk:sts:2.20.18`
- `software.amazon.awssdk:utils:2.20.18`
- `software.amazon.awssdk:url-connection-client:2.20.18`
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[GitHub] [iceberg] chajath commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by GitBox <gi...@apache.org>.
chajath commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1223274262
If it helps finding the bug, it sometimes works ok for me if I'm running it locally, as well. But when I deploy the pipeline and run it on k8s, there I saw the problem.
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[GitHub] [iceberg] github-actions[bot] closed issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] closed issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
URL: https://github.com/apache/iceberg/issues/5611
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[GitHub] [iceberg] chajath commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by GitBox <gi...@apache.org>.
chajath commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1222512825
Changing aws sdk version to `2.17.257` seems to have fixed the issue. Could this be a bug from AWS SDK's bundling?
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[GitHub] [iceberg] github-actions[bot] commented on issue #5611: S3FileIO fails with java.lang.NoSuchMethodError: 'void software.amazon.awssdk.utils.IoUtils.closeQuietly(java.lang.AutoCloseable, software.amazon.awssdk.thirdparty.org.slf4j.Logger)'
Posted by "github-actions[bot] (via GitHub)" <gi...@apache.org>.
github-actions[bot] commented on issue #5611:
URL: https://github.com/apache/iceberg/issues/5611#issuecomment-1454932852
This issue has been automatically marked as stale because it has been open for 180 days with no activity. It will be closed in next 14 days if no further activity occurs. To permanently prevent this issue from being considered stale, add the label 'not-stale', but commenting on the issue is preferred when possible.
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