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Posted to dev@uima.apache.org by "Min Jiang (JIRA)" <de...@uima.apache.org> on 2015/06/24 22:04:05 UTC
[jira] [Created] (UIMA-4480) Cannot declar new type in Java code to
apply Ruta rules
Min Jiang created UIMA-4480:
-------------------------------
Summary: Cannot declar new type in Java code to apply Ruta rules
Key: UIMA-4480
URL: https://issues.apache.org/jira/browse/UIMA-4480
Project: UIMA
Issue Type: Bug
Components: Eclipse plugins
Reporter: Min Jiang
I used Java code to apply UIMA Ruta rules, but with declare statement, ruta cannot recognize the new created annotation type.
Here is the code I used:
String rutaStr2 = "DECLARE person; W{REGEXP(\"Patient\") -> MARK(person)};";
Ruta.apply( aJCas.getCas(), rutaStr2 );
The error is like:
Jun 24, 2015 3:01:07 PM org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl callAnalysisComponentProcess(417)
SEVERE: Exception occurred
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
at edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
Caused by: java.lang.IllegalArgumentException: Not able to resolve type: animal
at org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
at org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
at org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
at org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
at org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
at org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
at org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
at org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
at org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
at org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
... 7 more
org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing failed.
at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
at edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
Caused by: java.lang.IllegalArgumentException: Not able to resolve type: animal
at org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
at org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
at org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
at org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
at org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
at org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
at org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
at org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
at org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
at org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
... 7 more
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