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Posted to commits@airavata.apache.org by di...@apache.org on 2019/01/31 21:32:00 UTC
[airavata] branch staging-temp created (now 3c783ac)
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a change to branch staging-temp
in repository https://gitbox.apache.org/repos/asf/airavata.git.
at 3c783ac Overriding default allocation project number
This branch includes the following new commits:
new 97eb7fa reorganizing svn
new fbe4b54 applied patch contributed by Lahiru for AIRAVATA-18, tested the build and all is well
new 8941392 applyied and verified patch from Lahiru to fix AIRAVATA-19
new 8118f98 accepting contributions from Lahiru to fix AIRAVATA-20 and AIRAVATA-21
new 87abdfb applying patch for AIRAVATA-22 and AIRAVATA-24. thanks for the patch Lahiru.
new 0ffd5d7 fixing the build. MessageBox -> messagebox
new 0e5d498 Review and committing the patch conributed by Lahiru for AIRAVATA-27,AIRAVATA-28, AIRAVATA-29, AIRAVATA-30, AIRAVATA-31, AIRAVATA-32, AIRAVATA-33
new 2039fda adding mysql mesage box scripts. We need to retain support for mysql although derby will be used by defualt
new ab91258 removing duplicated resources directory from messagebox/resources
new 5cddbb7 copying the script to common location where users can keeps their scripts for messagebox db.
new 45b7bf4 adding messagebroker mysql script to database_script directory.
new c91ddf5 reviewed and committing Lahiru's contribution for AIRAVATA-34
new 71aa338 minor fix - JDK6 compiler complained
new c507033 reviewing and checking patch from Lahiru for AIRAVATA-37
new 1e7d5ef https://issues.apache.org/jira/browse/AIRAVATA-38 fixing current known issues with Eclipse build
new 63fd012 https://issues.apache.org/jira/browse/AIRAVATA-38 fixing current known issues with Eclipse build
new 36b2ea4 Applying patch in Airavata-39. Thanks Lahiru for the contribution.
new 67031fa Added a parent pom for all the project to build/test all the projects. This also helps to import all the project using Eclipse M2 plugin. Right click on Project explorer > import > Existing Maven projects and select truck location.
new d1310af added parent pom location variable
new 27b217d removing all eclipse specific stuff to address discussion on AIRAVATA-38
new e7bd1ac This patch fixes issues AIRAVATA-42,AIRAVATA-43,AIRAVATA-47,AIRAVATA-46
new f7b114a fixing an error in sample
new 5a5a967 applying for-each patch for Jira task AIRAVATA-13
new 7c7ff0d Changing the naming uniformly across the project to match the discusison of AIRAVATA-43
new c01dcc6 removing old license and left over author tags
new c652c62 finished cleaning up all legacy licenses
new 05c6b9f added support for Derby and removed mysql driver. Will add instruction to configure mysql
new 672f2d3 added support for Derby and removed mysql driver. Will add instruction to configure mysql
new 3dab8ad removed duplicate files
new d7f92d4 Fixed AIRAVATA-44 missing property file error.
new 8ad1307 Deprecated support for mylead catalog to fix AIRAVATA-51
new 8bef738 Deprecated support for mylead catalog to fix AIRAVATA-51
new babf944 Updating the properties to use Apache Airavata to address AIRAVATA-45
new a587902 changed the properties in pom and add setups to configure MySQL in README.txt
new f85dfeb Fixing issue https://issues.apache.org/jira/browse/AIRAVATA-53
new 702ac57 unifying ws-messenger client implementation, removing deprecated client and use new client in all the locations including samples and test.
new 5c7e33c creating the new structure for samples, next step is to add the samples in to default build system.
new 1e6b1e3 reorganizing svn according to AIRAVATA-58
new e0ae8d6 deleted a stale external property
new afd863a updating module paths
new 0e458cc Stop build tracking as part of messenger. Need to break tracking library into schemas and clients.
new 278b9e7 workflow tracking schema
new 2d98c10 deprectaing the old tracking library
new 6f4cddb gfac schemas changed to airavata namespace AIRAVATA-68
new cbf336e validating and applied contribution from Patanachai to address AIRAVATA-70
new 2a3bc80 adding refactoring for workflow interpreter.
new 3f3858d fixed the duplicated created by earlier commit to fix AIRAVATA-70
new 0c18b32 accepting test cases from Patanachai to resolve AIRAVATA-71
new f533fd0 Deprecating the support for Karma client as discussed in AIRAVATA-60
new b9c7941 moving tracking library to commons area as this will be used by all modules AIRAVATA-61
new 946e50f updated notification types schema to address AIRAVATA-61 and deprecated query tracking for calder as discussed in AIRAVATA-63
new cecf6a7 chaning ws-messenger client and replace the consumption of ws-messenger client in xbaya to the new client notification funcationality. Minor fix for karma removal.
new 06fa205 fixing build issues.
new a243aa5 accepting patch from Patanachai to address AIRAVATA-71
new d71b6b7 accepting patanachai contribution of JCR implementation to address AIRAVATA-73
new 5d76fd3 missed some patches in AIRAVATA-73
new 1c8ad94 correcting groupId of messagebox.
new 5174960 applied patch for AIRAVATA-74 by Patnachai
new 91f784f applied patch for AIRAVATA-76 submitted by Patanachai
new 9380481 adding gfac-axis2-artifact module and gfac-axis2 modification with a message Reciever
new 80c4d53 accepting patch from patanachai to address AIRAVATA-56
new 1cc035f Started some editions to schema
new 1800caf minor modification to gfac-dispatcher code
new 66922e7 implementing the message reciever with invoke and getWSDL method handling
new a8b01f8 applied patch for AIRAVATA-77 by Patnachai
new 035787c applied patch for AIRAVATA-77 by Patnachai
new c605e76 applied patch for AIRAVATA-77 by Patnachai
new f6287bd fixing class loading issue and getWSDL operation issues.
new 8d163f2 fixing compilation error.
new a8aada6 fixing compilation error in gfac-schema.
new ef1e201 integrating with JCRRegistry implementation.
new 4c9caa1 adding new constructor to JCRRegistry.
new dbad483 fixing classloading issues when deploying gfac-axis2 service.
new 6aed8ed fixing issues when running a gfac service.
new 988b1ad fixing class loading issues when deploying in axis2 container.
new 4af5dcd fixing compilation error and reading file from classpath rather reading from exact location.
new 9d3fa57 fixing xbaya-test failures.
new 73ba379 fixing test failure.
new ef7fe7c Make a loading registry service from registry as an optional parameter in property file. Invoker can set it as parameter in invocation context.
new 3a4a063 Remove old gfac-schema from build file
new 1c61dc0 Create better log message.
new 5125a7f fix the error logic on registry initialization
new b5de7b5 Add default username and password for JCR
new 02430a0 changing the default repository.properties file.
new 75da367 Change database_scripts directory loader to Classloader instead of FileInputStream
new 6d0cefb Add saveWSDL and getWSDL to registry API
new 0854a52 fixing the input message structure in gfac-axis2.
new 8f2bd57 fixing xbaya subscription issue.
new 7dc7c59 sample math services to try xbaya - resolves AIRAVATA-67
new fb25be8 Adding the license header
new 2227e23 Check null to prevent empty header SOAP
new a6812e9 Add properties for MyProxy and SSH providers
new 4a6abde Parameter validation in the service
new 49b083d removing old workflow-tracking dependency from xbaya-gui.
new 02169bd fixing xbaya notification implementation.
new 36e7c10 Clean up Invoker
new 0f732c3 Remove remote invocation in DynamicWorkflowRunner and add notification
new bd1011b fixing issue https://issues.apache.org/jira/browse/AIRAVATA-83
new 6b2117b Fixing message delivery order to queue mode. Messages will be delivered like a queue.
new aeb247e fixing workflow tracking bug.
new cd58466 adding sample for new workflow-tracking schema.
new 0a3d54b moving distribution directory in to modules which is the normal convention.
new ad5d717 prototype Notification Interface
new 197a080 adding first version of distribution creation for airavata.
new 6af8dbb adding airavata distribution to build system.
new 32ea21f Change interface method to use String instead of Axis2 EPR
new 3ca6e9d Change interface method to use String instead of Axis2 EPR
new b04e4f4 Add the workflow tracking notification service
new 3232cff Add JCRRegistry support to XBaya
new 46e6a83 Fix compile bug in Xbaya pom
new 9581661 adding gfac axis2 service and jackrabbit dependency in to distribution build.
new 12a405e adding xbaya-gui axis2 service in bulid and distribtuion.
new 402037e Implement search service method
new c805bf1 Fix Gfac path calculation bug
new 800c66d CLeanup
new a73f5fb Code Cleanup:
new 59fd851 Code Cleanup:
new b21f1aa Code Cleanup:
new de031f9 Remove Apache common logging from GFAC-Core
new 158851a Change Util to use slf4j
new d8bf07e Make test case to use loggingNotification insteadOf DummyNotification
new 614800d adding gfac-axis2 getWSDL changes to give a full wsdl and an abstract wsdl.
new 0ecf443 adding getAbstractWSDL method.
new 286afdd adding jackrabbit standalone same version in to distribution.
new 3f328c4 fixing minor issue.
new 68284c8 Fix test error and move working directory to target folder.
new 7886d1c (Airavata-93) Some review comments about the context directory organization.
new c98c386 (RAVE-93) Some comments about package naming conventions that I found confusing.
new 372240e Clean up and change packages as suggest in REVIEW
new c65cf1d Fix test error
new 6986702 delete folder in commons
new 9c552f3 delete folder in commons
new c837367 delete context/impl
new b04852f (Airavata-93) More review comments, prefaced with TODO so that they will show up in Eclipse.
new 1ae857b Fix classloader and input/output problem
new 1e4faa0 GFac invoker create concrete WSDL to use with other invoker
new d220d6e Fix classloader problem
new c8a3e9d Code cleanup
new d15b0c4 Code cleanup
new ba0dcad Change input/output constants to methods
new 7c0d997 Change input/output constants to methods
new 0c1862d committing the feature of getting concrete wsdl from an abstract wsdl.
new 40971a5 changing package names.
new e77dbdf removing utils.
new b7380d9 pom structure changes by using parent poms.
new 63b5af2 allowing custom scripts to parse arguments.
new ecda53c Remove building concrete WSDL part
new 25b9dec cleaning up the pom files in the project.
new 126e0d5 fixing https://issues.apache.org/jira/browse/AIRAVATA-90 and more build structuring work.
new f97395a adding common utils package.
new 9e17099 Redefine Exception
new f8dc8d4 fix pom
new c1e50c5 changing slf4j verison.
new 7f5a19c update SSH version
new 124dc0a removing duplicated variable.
new ae17b20 using some of the components added in to common.util package.
new 1fe86c5 (Airavata-91) Fixing minor typo in slf4j version.
new c4e8e0b Change to Apache Commons Configuration
new 91c2a91 removing BrowserLauncher and use utils class.
new 51f9c2b changing jackrabbit version
new d347dd8 fixing build issue.
new 1bce9c4 Update to use only one property file
new 890fe67 fixing build issue.
new 340b1b0 fixing build issues.
new ae719d4 Adding workflow test case and adding capability for engine to run without the notification system
new affb78d removing common classes.
new 7c199e0 using classes in common/utils.
new ea75727 using common utils classes.
new 5948c6e using all the common/utils classes.
new f1a40f6 removing the classes used in common utils.
new 7685ca5 Code cleanup
new f04968a (Airavata-93) More review comments, prefaced with TODO so that they will show up in Eclipse.
new 18c0870 adding echo service to start during test run, to use with workflow interpreter test.
new 1e8da39 Redesign concurrency in Gram job listener
new fb3494a Change Notification Interface
new 28797bf JavaDoc comments
new 441e03a creating new registry api module and use that in other locations. Update the distribution creation accordinly.
new ece9ca7 Update property file
new 8a53eca Fix NullPointer Exception
new de24fe5 Patch is applied by Saminda
new e6d3c1f deleting the stale schemas dir
new 12b0dcd temporarly removing xregistry from defualt build while JCR integration is tested through
new c71267d fixing the error when invoking gfac service using xbaya.
new d4c6c13 committing teh patch given by saminda for issue https://issues.apache.org/jira/browse/AIRAVATA-98.
new 7947534 changing default url of repository to work with airavata pack.
new 3779df3 changing structure of ws-messenger pack.
new 49b85c7 fixing bad commit
new 7ab8deb adding workflow execution context to address AIRAVATA-100
new 7e2ee3a minor changes to xbaya test.
new 449d83e Schema refinements
new b58dac6 New provider interface
new bfafd46 Code cleanup and change package name of Providers
new 4e82afb adding notification funcationality to gfac-axis2.
new d625f18 adding notification funcationality to gfac-axis2.
new ec4a6dc Add WS-Messenger Client module
new 5aa6955 Add Ws-messenger Common
new 8132078 Remove common from WS-Messenger
new d26f35d Change class to use ws-messenger-commons
new 83d3f4e Change classes to use ws-messenger-commons
new 26cbe8c Put commons and client into distribution
new 0d14b12 Remove package and unused class
new d517e6e Change Workflow Tracking to use new messenger client
new 937c04c making all the gfac-notificaitons to be displayed in xbaya.
new d8aab23 Fix name typo
new 8a506ef fixing the password field from normal text field of jcr-registry add.
new 362d36a refactoring gfac-core.
new c25673a refactoring notification implementation in gfac.
new 4c418e3 (AIRAVATA-101) move more classes to commons package. Also, try to rewrite SQL related class. Might fix (AIRAVATA-49)
new a7a9950 AIRAVATA-101 fix lock table bug from the previous commmit
new 03c2756 AIRAVATA-101 change common class to utility class (static methods)
new cfb3eb5 AIRAVATA-101 Remove unnecessary classes, add code inspection
new 4933e22 AIRAVATA-101 Clean up on Database check method
new e137e82 AIRAVATA-101 fix synchronization problem by using AtomicInteger instead of Integer Object
new 3a7c92b AIRAVATA-101, AIRAVATA-107 Remove unused codes and change to SLF4J
new 4ef0ca1 fixing https://issues.apache.org/jira/browse/AIRAVATA-111.
new bdaceb4 fixing https://issues.apache.org/jira/browse/AIRAVATA-113.
new 9b9ef31 fixing https://issues.apache.org/jira/browse/AIRAVATA-112.
new 3478b0c AIRAVATA-82 fix synchronization and always release table lock
new 1e514e1 AIRAVATA-101 Move WS-Messenger sample classes to correct file path as declare in package name
new 3628ff4 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-115.
new dec415e fixing issue https://issues.apache.org/jira/browse/AIRAVATA-115.
new 7564da4 fixing https://issues.apache.org/jira/browse/AIRAVATA-115
new 0d204ee fixing https://issues.apache.org/jira/browse/AIRAVATA-116.
new 9464a11 fixng https://issues.apache.org/jira/browse/AIRAVATA-116.
new 444b666 applying AIRAVATA-104-UM-API-JackRabbit-Impl.patch provided by saminda.
new 6ee6d85 applying samindas patch for https://issues.apache.org/jira/browse/AIRAVATA-104.
new 6756763 AIRAVATA-101, AIRAVATA-107 Improve code in messagebox modules and remove log4j
new 32f9f22 Fix messagebox samples error from modified package name
new c0cee2a AIRAVATA 101 Adding Service class to service.xml (removed by previous commit)
new eba467e committing saminda's patch for AIRAVATA-104.
new 926cfef AIRAVATA 101 Create better SQL statement for deleting MessageBox
new 54b4c79 AIRAVATA 101 fix test case for messagebox
new cf37cf3 AIRAVATA-108 remove log4j from maven dependencies
new a3b2852 AIRAVATA-108 remove log4j from ws-messenger
new 532807d Update the imlementation for https://issues.apache.org/jira/browse/AIRAVATA-116.
new b410bd9 work related to https://issues.apache.org/jira/browse/AIRAVATA-116.
new dd543eb related work for https://issues.apache.org/jira/browse/AIRAVATA-117.
new 8e2667a fxing build issue.
new 4d0a3bb AIRAVATA-101 Namespace clean up
new ff52574 AIRAVATA-105 XML Schema from the current POJOs
new e9830d3 AIRAVATA-101 Fix class name change compilation error
new 969118f AIRAVATA-101 change ws-broker test package name
new 70df3c2 Fix test case with Dialect attribute
new 5597ffd AIRAVATA-101 change messagebox namespace and fix test cases
new d87b2e0 Add missing class in previous commit
new 27a738a Remove unused import that causes compilation error
new c043321 AIRAVATA-101 clean up on database connection
new df1a3af AIRAVATA-101 add queue initialization
new 79ccc70 AIRAVATA-101 Change Thread Pool in FixedParallelSender to Standard Java Thread Pool.
new 8933d20 AIRAVATA-101 Fix build error
new 45a1159 AIRAVATA-101 Change FixedParallelSender and ParallelSender.
new 2f060b2 AIRAVATA-101 Correct synchronization problem
new 6cc8328 AIRAVATA-101 Add shutdown step for message broker
new 02d4d4b committing saminda's patch for issue: https://issues.apache.org/jira/browse/AIRAVATA-104.
new 4557d8b AIRAVATA-101 revise concurrency in ConnectionPool
new f2d4a1c committing saminda's patch for https://issues.apache.org/jira/browse/AIRAVATA-119, and committing the fix for https://issues.apache.org/jira/browse/AIRAVATA-121.
new 0b4aff7 fixing https://issues.apache.org/jira/browse/AIRAVATA-121.
new 3a871cc Add more shutdown method to WS-Messenger
new 1997933 fixing https://issues.apache.org/jira/browse/AIRAVATA-125.
new c8ed3ca fixing issue https://issues.apache.org/jira/browse/AIRAVATA-126.
new ab9af79 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-126.
new 59f4dc7 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-126.
new 75aadd6 Fix address url error from Axis2 EPR
new 9cd3607 fixing https://issues.apache.org/jira/browse/AIRAVATA-124.
new 5b4b6cb AIRAVATA-101 remove log4j
new 72fb9eb code cleanup and fixing https://issues.apache.org/jira/browse/AIRAVATA-127.
new addc266 fixing xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/gui/MonitorEventHandler.java.
new e8de0de Remove unnecessary log message
new ecf3708 fixing compilation error.
new 722822b fixing https://issues.apache.org/jira/browse/AIRAVATA-127.
new 3c78ccd AIRAVATA-129 Read subscription as InputStream instead of String
new 72fecdd AIRAVATA-107 replace logging with SLF4J in commons and gfac-axis2 module
new 649175a AIRAVATA-109 change to SLF4J
new 003296d AIRAVATA-107 change to SLF4J
new 3ab88db fixing https://issues.apache.org/jira/browse/AIRAVATA-130.
new c14364c fixing https://issues.apache.org/jira/browse/AIRAVATA-130.
new 782e03b fixing https://issues.apache.org/jira/browse/AIRAVATA-130.
new 6c17a0b fixing https://issues.apache.org/jira/browse/AIRAVATA-120.
new cc27d3d applying patch given by saminda for issue https://issues.apache.org/jira/browse/AIRAVATA-123.
new 39ace70 Correct Project name
new ad20596 fixing https://issues.apache.org/jira/browse/AIRAVATA-132.
new 1b92b0f Fix name typo
new 68797ba fixing https://issues.apache.org/jira/browse/AIRAVATA-135.
new 1cd2fdc AIRAVATA-134 add output register extension to GFac-Core
new 996831f fixing https://issues.apache.org/jira/browse/AIRAVATA-133.
new 747ce65 fixing https://issues.apache.org/jira/browse/AIRAVATA-133.
new 2f39adb fixing https://issues.apache.org/jira/browse/AIRAVATA-136.
new d98a263 fixing https://issues.apache.org/jira/browse/AIRAVATA-136.
new f63ee64 fixing https://issues.apache.org/jira/browse/AIRAVATA-123.
new 36488da fixing https://issues.apache.org/jira/browse/AIRAVATA-123. AIRAVATA-123-BE-2.patch
new b8fd2e9 AIRAVATA-123 change field name in description to identifier
new 59c5940 fixing https://issues.apache.org/jira/browse/AIRAVATA-123. AIRAVATA-123-BE-3.patch
new 4757d6a AIRAVATA-137 implement a simple version of generate WSDL from ServiceDescription
new 5551e4a AIRAVATA-137 Change Util class name and fix close tag bug
new 48c6fe1 AIRAVATA-107 Remove common-logging
new 7c59d4c AIRAVATA-107 Remove common-logging
new 8ffce10 Enable Dynamic Phase adding in GFac instead of using axis2.xml
new 035f9fc Enable Dynamic Phase adding in GFac instead of using axis2.xml
new bd822fa merge gfac-axis2 with gfac-axis2-artifacts modules
new eee2841 AIRAVATA-107 Remove common-logging
new 1a2d68c Remove XSUL from GFac Axis2
new 974942d renaming to keep the consistency.
new 87e4564 fixing https://issues.apache.org/jira/browse/AIRAVATA-139.
new e31561a fixing https://issues.apache.org/jira/browse/AIRAVATA-139.
new 7753f7c New DataType System
new 4a75889 New DataType System
new aa06178 Fix build error
new b8b27fa https://issues.apache.org/jira/browse/AIRAVATA-137 autogenerate wsdl & save when creating a service description
new 08d4cd0 AIRAVATA-137 fix build error
new 0cc599b AIRAVATA-137 fix build error etc.
new 5aee0d8 remove buggy code
new dac0cd2 removing XRegistry items from menu and fixing build error: https://issues.apache.org/jira/browse/AIRAVATA-140.
new d540201 fixing https://issues.apache.org/jira/browse/AIRAVATA-141.
new 24c1e32 AIRAVATA-142 increase Consumer Address to 255
new 447a34c AIRAVATA-119 add more step in saving Application Deployment Description
new fdffe78 Fix bug in gfac-core
new 028dc77 Fix bug in LocalProvider
new dd1ca9a Fix bug in Gfac-Core
new 4d6056c Add echo.sh for tutorial
new bb7f3db Change file name
new 229f489 Change file name
new 992cb9f remove echo.sh
new 1f7718f add echo.sh with new file permission
new eff3b35 https://issues.apache.org/jira/browse/AIRAVATA-123 AIRAVATA-123-GUI-3.patch
new 99ffe1c deprecating xregistry to address AIRAVATA-144
new 131d9a3 Deprecating all XRegistry access in XBaya fixing AIRAVATA-140. Also partially addressed AIRAVATA-145 for gpel client support.
new 9d23582 AIRAVATA-105 parameters
new da209f8 AIRAVATA-105 change name
new ec8b5dd AIRAVATA-105 add element type for autogenerated document
new 804c8c9 Adding globusonline transfer api client to maven
new 575f495 Removing unused streaming
new 17ac169 Removing unused streaming
new 9c43211 Removing unused streaming
new 7610567 Removing unused streaming
new a9379cf Removing unused streaming
new fff25df Removing unused streaming
new dbea311 Removing unused streaming
new 4628d1a Removing unused streaming
new b9d6c79 Removing unused streaming
new f15dddb Removing weps dependency
new 09447cb Removing weps dependency
new d3c1c94 Removing weps dependency
new b4973f1 Removing weps dependency
new 30baaca Removing weps dependency
new 8a038a1 Removing weps dependency
new bebb29c Removing weps dependency
new f098e51 Removing weps dependency
new dcbd306 Removing weps dependency
new a667b42 Removing weps dependency
new 41a68b0 Removing weps dependency
new 5817151 fixing https://issues.apache.org/jira/browse/AIRAVATA-149.
new 91afbcc code cleanup of xbaya https://issues.apache.org/jira/browse/AIRAVATA-140.
new 472c2da code cleanup in XBaya.
new 05e01a9 code cleanup of xbaya https://issues.apache.org/jira/browse/AIRAVATA-140.
new 395412e infite loop issue filling the table
new 79a5131 adding globus-transfer-client into distribution.
new ac23404 https://issues.apache.org/jira/browse/AIRAVATA-148
new 037adb1 Adding constants and formatting code.
new 65bbe67 removing utils class until teh schema is changed
new 4cf01e9 fixing https://issues.apache.org/jira/browse/AIRAVATA-150 .. not yet completely fixed.
new 8d3ec46 fxing AIRAVATA-150.
new 1b500ff Committing the patch for AIRAVATA-151. Thanks Heshan for the contirbution.
new 0843927 fixing AIRAVATA-150.
new 90a9e29 Committing the patches for AIRAVATA-143 & AIRAVATA-146. Thanks Heshan for the contribution.
new d56ff14 https://issues.apache.org/jira/browse/AIRAVATA-148
new 2604f12 https://issues.apache.org/jira/browse/AIRAVATA-148
new 29d4c96 Applying patch for AIRAVATA-105. Thanks Heshan for the contribution.
new 6adbd24 Removing user name and password from message body. If any security credentials are needs, they will be passed along in the context header.
new 49f42f2 adding new class for new ContextHeader.
new 55dbb7e changing the schema.
new c2143f4 adding workflow-execution-context to build system.
new e1cbd95 Improved context header schema to have flexible workflows to address AIRAVATA-152
new c487176 adding new wrapper for workflow-execution.
new 1f98a29 removing everyghing.
new 4618ae3 adding new code.
new aa98c86 remvoing resources.
new 8083574 removing schemas.
new 3ad0449 removing.
new 3e7774f fixing build error.
new 83b3b15 minor changes.
new b0d24e4 adding correct package.
new 49001a0 removing wrong package.
new 7f420b9 addng util method to compare.
new 006560a Applying the patch (patch-to-fix-build-break.difffor the issue AIRAVATA-105 Thanks Heshan for the contribution
new 0cf7bdc adding workflwo-execution-context in to build.
new 6cb69b0 Applying the patch (AIRAVATA-153-patch-ver1.diff) for the issue AIRAVATA-153 Thanks Heshan for the contribution
new ff2190d Applying the patch for the issue AIRAVATA-154 Thanks Heshan for the contribution
new 3924ea0 using workflowcongextheader.
new f814e3b Applying the patch for the issue AIRAVATA-155 Thanks Heshan for the contribution
new 7dc73bc https://issues.apache.org/jira/browse/AIRAVATA-148
new dcc0876 Applying the patch for AIRAVATA-156 Thanks Heshan for the contribution
new 94da078 Applying the patch for IRAVATA-156 Thanks Heshan for the contribution.
new f078b99 fixng an issue with XBayaService.
new 6a1be28 Code formatting as per http://svn.apache.org/repos/asf/incubator/airavata/etc/eclipse/
new 546a6d9 version number in about menu and minor xregistry clean up
new fc592ac implementing input registering feature at https://issues.apache.org/jira/browse/AIRAVATA-160.
new ce70a87 fixing xml comparison function.
new 7f5094e Applying the patch for AIRAVATA-165 Thanks Heshan for the contribution.
new bc0ab42 implementing https://issues.apache.org/jira/browse/AIRAVATA-160.
new 0df1d3f fixing https://issues.apache.org/jira/browse/AIRAVATA-160.
new 2e2803a Applying the patch for the issue AIRAVATA-166 Thanks Heshan for the contribution
new aca6b46 Applying the patch for the issue AIRAVATA-168 Thanks Heshan for the contribution
new 83d3f1f Applying the patch for the issue AIRAVATA-167 Thanks Heshan for the contribution
new 7b6fed9 AIRAVATA-170 change throw out exception and implementation to XMLBean object
new 797895d Applying the patch for the issue AIRAVATA-169 Thanks Heshan for the contribution
new 451b200 AIRAVATA-170 change XMLBeans generated objects
new 2d38395 AIRAVATA-138 simple test case
new ba4db24 AIRAVATA-138 pom.xml with JUnit test dependency
new 5787b0f fixing build error https://issues.apache.org/jira/browse/AIRAVATA-164.
new 18a4fc3 Airavata-170 fix build error
new 53bcd0e AIRAVATA-138 fix build error
new 943bd64 fixing minor issue with output data saving.
new 9525976 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1188322 13f79535-47bb-0310-9956-ffa450edef68
new ed3e102 Airavata-170 fix build error
new 420af38 Airavata-170 Change toXml and fromXml for subclass
new 53175f6 AIRVATA-170 Revert back for stable built
new 52501a2 AIRAVATA-170 remove unused method
new 35fa811 AIRAVATA-170 Change XBaya to support generic interface
new 48cf831 AIRAVATA-138 service test case for JCR
new 2a3d853 adding parameters to cnofigure workflow provenance persistence.
new de0cd86 allowing users to provide arguments to xbaya.
new 8305581 fixing build error.
new 531a99f adding new methods to registry api to save inputs and outputs.
new d4c274d fixing the structure of input/output of the workflow.
new 56be945 AIRAVATA-170 fixed save Parameter problem
new 4c1ae36 AIARAVATA-170 fixed build error
new 83c0163 test main class
new d2cad96 fixing build error.
new 6496f8d fixing bug.
new 420d10f https://issues.apache.org/jira/browse/AIRAVATA-159
new 5a671c0 https://issues.apache.org/jira/browse/AIRAVATA-159
new ed41ff9 AIRAVATA-171 initial version
new b868ca1 AIRAVATA-171 Xbaya updated to XMLBeans
new 5174fa6 https://issues.apache.org/jira/browse/AIRAVATA-148
new 4540266 enabling test cases in ws-messenger.
new e50bd74 AIRAVATA-171 update parameter model
new cda1a04 AIRAVATA-171 Add mapping from application to Gfac
new 41f3cac AIRAVATA-171 fix new package
new 116e10b minor changes to gfac-core to get Gramprovider working.
new f75a16d adding test suite to airavata.
new a4246e2 minor fix.
new 538c315 revert.
new 440efbd adding test suite.
new 3464c2a fixing build warnings.
new 452a18c adding tests to utils.
new 0e7552e more changes to unit tests.
new 3b15882 moving tests in to test-suite.
new 72a7c15 fixing test errors.
new ca542d8 AIRAVATA-171 all new schema
new 9a2185f AIRAVATA-171 xbaya with new schema
new 27f9032 changing xbaya according to new gfac schema.
new 856c77e fixing build error.
new d364592 adding test-suite to build without tests.. to makesure it compiles properly.
new 3f5f0f7 AIRAVATA-138 deployment description save and load test
new 1e4bdb6 fixing minor issue.
new 94ad58c getWSDL function to use getServiceDescription instead reg browser parameter type
new 899729a https://issues.apache.org/jira/browse/AIRAVATA-173
new 2391b23 triggerObservers when descriptors are deleted from the jcr registry
new 3fd156a https://issues.apache.org/jira/browse/AIRAVATA-174
new 2efdcad https://issues.apache.org/jira/browse/AIRAVATA-175
new 532ddff fix error on saving on the wrong workflow IO tag + change to save input node rather than document node in workflow data
new d119bb0 https://issues.apache.org/jira/browse/AIRAVATA-159
new 7ddf76c adding required fields to run gramprovider.
new ffa2821 logic error in servicedrescription name match
new 2b599d9 Adding GSISSH Host Type, improvement for AIRAVATA-161
new b026330 Adding WSDL generation utilities to address AIRAVATA-163
new ddd8c34 Testing and Applying Heshan's contribution for AIRAVATA-177
new d68fda8 Applying Heshan's contribution for AIRAVATA-17
new 1719ac0 release preparation: header checks, code formattings and cleanups
new 6f78b66 fixing NPE during gfac-service invocation.
new 4144992 change of property name.
new 0bdf761 adding documentation to distirbution.
new 6e87575 fixing minor issue in readme.
new 6408dcc Applying the patch provided by Heshan for the issue AIRAVATA-178
new 31e3a4a Couple of methods to write test cases for generate wsdl
new 56857d6 AIRAVATA-171 WSDL generator
new 948cd5b WSDL generator
new 80a1daa Fix testcase error
new 1acf493 change way to save service description
new 03bc880 Type mapping
new 084d12b Fix WSDL Generator
new a1400a1 reverting a bad commit.
new 34fb029 WSDL Generator
new a7318ab Namespace WSDl
new a375c29 fixing axis2 error during gfac service invocatin.
new 2159b87 Committing the patch given by Heshan for AIRAVATA-179
new ee16476 Applying the patch provided by Heshan for issue AIRAVATA-178
new 57c54cb removing usage of getservicelocation function in Registry API from the scheduler
new 929b57f doing a minor fix.
new fab77bd Patch given by Heshan for AIRAVATA-176
new 99a1d0b Applying the patch given by Heshan for AIRAVATA-147
new 3874326 fixing gfac-service invocation issue.
new fc6069e https://issues.apache.org/jira/browse/AIRAVATA-180
new e0e6423 ui improvement
new b05f9ef Change return type
new b8c6233 reverting the change of return type.
new 08fcc62 fixing minor issue with multiple nodes.
new 7d5a75a fixing more issues with gfac service invocation.
new 4285099 considering input given by user is xml when needed.
new edb1f87 Applying the patch for AIRAVATA-177 Thanks Heshan for the contribution
new 5d6d043 save the table data to the model when lost focus
new 8cebb16 fixing issue with class casting when having different types of parameters.
new 1daebbf Adding missing license header and project description in README
new c5acc2a Applying the patch given by Heshan for AIRAVATA-182.
new babed81 https://issues.apache.org/jira/browse/AIRAVATA-102
new 6b552c1 https://issues.apache.org/jira/browse/AIRAVATA-102 etc.
new 53ab63b https://issues.apache.org/jira/browse/AIRAVATA-102 etc.
new ca7d928 wrong root model set as jcr browser tree root node + caption update on import options in the xbaya menu
new 41538ca adding version 0.1 changelog
new 438d58c https://issues.apache.org/jira/browse/AIRAVATA-102 etc.
new d860431 Minor UI change.
new 42c3468 typos
new e3a4a6c adding import wsdl from url option
new 1bae1b4 dependencies clean up
new 414de25 POM clean up
new a3bb63b POM clean up
new 9e15ba5 POM clean up
new 7e2afbd remove Child class loader
new 662859e Checking the commit rights.
new 21cbc66 changing the port from 5555 incase it is blocked on test machines.
new 2e61b78 Fully populated changelog
new 430f2ae Mandatory Notice, disclaimer and license files
new dd50022 Trying few trial and error ports to make jenkins happy.
new 41a55a5 including notices and licenses for dependency library files
new 64c0dd2 Skipping tests as Jenkins randomly has issues with starting ports.This should be handled as discussed in AIRAVATA-184
new 489bd8b Moving files to trunk and updating binary assembly
new 2012584 Added license header to adress AIRAVATA-188
new 98640ed deleting 0 byte empty files
new ea371ff Adding missing license header to address AIRAVATA-188
new b033177 Adding missing license header to address AIRAVATA-188
new a256633 Adding missing license header to address AIRAVATA-188
new a3453fc Updated workflow to the old echo service
new 000a2df Updating instructions before the branch.
new 7a6c28c fixing startup script issues.
new b5b9d85 https://issues.apache.org/jira/browse/AIRAVATA-195
new 38fd36e addressing AIRAVATA-197, AIRAVATA-200, AIRAVATA-199
new 16273fe addressing AIRAVATA-196, AIRAVATA-197,AIRAVATA-198, AIRAVATA-199, AIRAVATA-200
new eb7a376 removing a settings file
new c4ac333 adding license and notice files specific to binaries.
new 0b8bc39 Updating license files to seperate source and binary notices to address AIRAVATA-186
new a07cc22 Updating license files to seperate source and binary notices to address AIRAVATA-186
new aa377ab changing package name to please maven javadoc pluggin
new 8887279 [maven-release-plugin] prepare release airavata-0.1-incubating
new cbdcb7f [maven-release-plugin] prepare for next development iteration
new 11d2b94 [maven-release-plugin] rollback the release of airavata-0.1-incubating
new b79b166 Fixing the build by removing the overriding source location. Now the defualt source assumes src/main/java
new d9919ac [maven-release-plugin] prepare release airavata-0.1-incubating
new 40987a6 [maven-release-plugin] prepare for next development iteration
new 06bad6b [maven-release-plugin] rollback the release of airavata-0.1-incubating
new f13eec0 updating group ids and parents in pom
new 2e83b87 updated release date
new fdeb24b [maven-release-plugin] prepare release airavata-0.1-incubating
new faaae6b [maven-release-plugin] prepare for next development iteration
new 5cfd24e https://issues.apache.org/jira/browse/AIRAVATA-195
new 135467b https://issues.apache.org/jira/browse/AIRAVATA-201
new 47870f9 Adding the initial version of the EC2Provider(AIRAVATA-202)
new 9dd61ac Adding the license header.
new e572c75 enabling tests in ws-messenger.
new 4d7301e Adding EC2 host description to the HostDescription schema.
new 9494168 chanign test cases to pick port dynamically.
new ff9c5fa changing ports to pick dynamically in messagebox testcases.
new 29b9a0a https://issues.apache.org/jira/browse/AIRAVATA-201
new 7ad316b fixing a test case.
new 2e2960e fixing https://issues.apache.org/jira/browse/AIRAVATA-212.
new 47ca9a2 fixing https://issues.apache.org/jira/browse/AIRAVATA-212.
new 3a753c6 changing default log level of airavata and fixing issue https://issues.apache.org/jira/browse/AIRAVATA-208.
new 90b9b86 save on close workflow tab + refactoring https://issues.apache.org/jira/browse/AIRAVATA-195
new ad81315 adding source plugin to create source pack for airavata.
new 9bbcdca removing unnecessary stack trace.
new c4425ef disabling unimplemented menus.
new 0a5c462 Fix for AIRAVATA-214.
new 111de34 Fix for AIRAVATA-215
new 6815ea0 Fix for AIRAVATA-215
new 9aee10d Updating a dependency.
new f510dbd Updating the EC2Provier and the Schedular. AIRAVATA-202
new 3e5ded2 Fixing some test failures in the PropertiesBasedServiceImplTest
new 5ee74b4 Adding AmazonEC2Menu to the XBaya GUI.
new 10ddf45 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-216.
new 66e7761 fixing https://issues.apache.org/jira/browse/AIRAVATA-217.
new ed03e8c fixing https://issues.apache.org/jira/browse/AIRAVATA-217.
new 36afece fixing findbug issues.
new 22dda67 fixng findbug issues.
new 9cc7ca1 fixing build error.
new 0096683 fixing wrong logic when saving globusHost description.
new 71f47b1 fixing some methods.
new e2bf603 fixing findbug error.
new 5dcf8ff fixing findbug issues.
new 1549f16 Making the repository name more meaningful
new bd84825 Fixing an issue while running the GlobusFileTransferWindow.
new c981bef Removing the amazon ec2 menu from the xbaya menu.
new f226b16 fixing issue when saving Host Description.
new c83b1e3 Updating dialogs with xbaya components instead
new 67edcc9 adding new elements to schema.
new cda3c41 fixing required element for notifications.
new 2cc3bb7 fixing issue with owrkflow opening.
new 1e382df fixing gfac to work with normal gram job.
new 78077bf minor change in gfac-core.
new 009e3bc fixing issue when creating RSL parameters.
new 9653faa handling asynchronous call from Xbaya.
new 6537ce3 setting trusted key location in gfac-axis2, and read it from a properties file.
new 4ea2c64 adding asynchronous service call to xbaya.
new 40dd168 remove unnecessary header element from workflow exectuion context.
new 3de410b removing unused import
new 0692667 updated icons for jcr browser/menu
new f29ce97 updating application icon + updating about dialog
new a19b28c adding ogce-xbaya changes to airavata.
new 294b1df https://issues.apache.org/jira/browse/AIRAVATA-218 + saving as globus host correctly
new 82f254e https://issues.apache.org/jira/browse/AIRAVATA-219
new 8f4b612 ask to reset/stop previous run b4 running another workflow
new d8a237f pop up message to clean previous workflow execution retrieve myproxy settings from the messeagereceiver context
new f1d07aa Disabled Jython menu item to address AIRAVATA-227
new 5cc91f8 https://issues.apache.org/jira/browse/AIRAVATA-221 + globus settings when registering a app descroption having a globus host
new 6756045 REmoving GPEL components
new 1292768 https://issues.apache.org/jira/browse/AIRAVATA-145
new b34d1b1 Fixing
new 228d723 https://issues.apache.org/jira/browse/AIRAVATA-226 + some gui improvements
new 3efcf84 https://issues.apache.org/jira/browse/AIRAVATA-230
new 566c052 https://issues.apache.org/jira/browse/AIRAVATA-230
new 22d88bb https://issues.apache.org/jira/browse/AIRAVATA-230
new 15e0273 https://issues.apache.org/jira/browse/AIRAVATA-230
new a88d844 https://issues.apache.org/jira/browse/AIRAVATA-230
new 3758f47 https://issues.apache.org/jira/browse/AIRAVATA-230
new a01e809 https://issues.apache.org/jira/browse/AIRAVATA-230
new 5b13ece https://issues.apache.org/jira/browse/AIRAVATA-230
new a433867 https://issues.apache.org/jira/browse/AIRAVATA-230
new 282127e https://issues.apache.org/jira/browse/AIRAVATA-230
new dc103e3 https://issues.apache.org/jira/browse/AIRAVATA-230
new efba469 https://issues.apache.org/jira/browse/AIRAVATA-230
new 43f3adc https://issues.apache.org/jira/browse/AIRAVATA-230
new 83eac2f https://issues.apache.org/jira/browse/AIRAVATA-230
new 84b9910 https://issues.apache.org/jira/browse/AIRAVATA-230
new 077458d https://issues.apache.org/jira/browse/AIRAVATA-230
new a8e860d https://issues.apache.org/jira/browse/AIRAVATA-230
new 0eb2a88 https://issues.apache.org/jira/browse/AIRAVATA-230
new 81c8746 https://issues.apache.org/jira/browse/AIRAVATA-230
new 40e4d9a https://issues.apache.org/jira/browse/AIRAVATA-230
new 3b558e9 https://issues.apache.org/jira/browse/AIRAVATA-230
new 661dacf https://issues.apache.org/jira/browse/AIRAVATA-230
new de26d46 https://issues.apache.org/jira/browse/AIRAVATA-230
new 6376662 https://issues.apache.org/jira/browse/AIRAVATA-230
new 8d0b655 https://issues.apache.org/jira/browse/AIRAVATA-230
new 120c08c https://issues.apache.org/jira/browse/AIRAVATA-230
new ee85e1f https://issues.apache.org/jira/browse/AIRAVATA-230
new c64ad72 https://issues.apache.org/jira/browse/AIRAVATA-230
new 6da30ac https://issues.apache.org/jira/browse/AIRAVATA-230
new 714f939 https://issues.apache.org/jira/browse/AIRAVATA-230
new 7928c48 https://issues.apache.org/jira/browse/AIRAVATA-230
new 8cf876e https://issues.apache.org/jira/browse/AIRAVATA-230
new b22ddb4 https://issues.apache.org/jira/browse/AIRAVATA-230
new c12cb8a https://issues.apache.org/jira/browse/AIRAVATA-230
new cee2d74 https://issues.apache.org/jira/browse/AIRAVATA-230
new df0b21a https://issues.apache.org/jira/browse/AIRAVATA-230
new 3049d43 https://issues.apache.org/jira/browse/AIRAVATA-230
new 40b306a https://issues.apache.org/jira/browse/AIRAVATA-230
new 484763f on cleanup set execution as stopped
new 1f320af git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1220443 13f79535-47bb-0310-9956-ffa450edef68
new 158a808 fixing https://issues.apache.org/jira/browse/AIRAVATA-222.
new e31e03a AIRAVATA-231
new 4970ab5 AIRAVATA-231
new a63a5f4 AIRAVATA-231
new 897a3e1 AIRAVATA-231
new 4efe498 AIRAVATA-231
new a4d1f0d AIRAVATA-231
new 8b2cabb AIRAVATA-231
new 2f6c861 AIRAVATA-231
new 640bc76 AIRAVATA-231
new 55f4602 AIRAVATA-231
new a39364e AIRAVATA-231
new bc9ce9d AIRAVATA-231
new a2973f2 AIRAVATA-231
new 447e93f AIRAVATA-231
new d7e079e AIRAVATA-231
new 35d5e11 AIRAVATA-231
new 6da4ecb AIRAVATA-231
new 036c8c1 AIRAVATA-231
new 61fc9b4 AIRAVATA-231
new 09d236c AIRAVATA-231
new bb32bad AIRAVATA-231
new db99e0c AIRAVATA-231
new b410866 AIRAVATA-231
new 589606e AIRAVATA-231
new 4b962b4 AIRAVATA-231
new c396685 AIRAVATA-231
new c107a53 AIRAVATA-231
new 2c5d5e0 AIRAVATA-231
new ca5f2b7 AIRAVATA-231
new d856814 AIRAVATA-231
new 4ea2cc9 AIRAVATA-231
new 5557263 AIRAVATA-231
new 848c5fa AIRAVATA-231
new 04af0c3 AIRAVATA-231
new fb0bd38 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1220503 13f79535-47bb-0310-9956-ffa450edef68
new 3a2c2a9 Updating workflow with Stream deprecations Bugfix
new e0cc395 Removing streaming package
new a187791 Fixing findbugs issue. Nullpointer dereference.
new 7d838f2 Fixing a findbugs error.
new 6c36b85 fixing testcase failure.
new 2547b8b adding new tests.
new 761760c Fix for the issue AIRAVATA-234
new 90de773 https://issues.apache.org/jira/browse/AIRAVATA-235 fixed for service descs
new 90c8403 updating host desc dialog to use it self as the dialog class
new fa69eeb https://issues.apache.org/jira/browse/AIRAVATA-235 fixed for appl descs
new 508a8b9 adding registry restart test.
new 76c8d8f removing working dir field (no longer required) workflow import from registry from reg browser + save workflow to registry updates saved status of the graph canvas
new 5be38ad adding getter method for repository.
new 3385562 adding registry Delete test.
new 81940d6 etc
new e3307a6 Fix for issue AIRAVATA-234
new b8febdf https://issues.apache.org/jira/browse/AIRAVATA-235 fixed for host descs
new e7e2e23 Adding the sample for fore-each cross product AIRAVATA-225
new 6880f38 Adding the service to calculate LevenshteinDistance AIRAVATA-225
new cf369b5 Adding a test case for for-each Cross Product AIRAVATA-225
new f049e24 Updating WorkflowTestUtils AIRAVATA-225
new 1aca751 Updating license headers.
new 7089c7d Updating the Levenshtein Distance service. AIRAVATA-225
new a4d5f62 Updating the workflow to fix an issue with input types AIRAVATA-225.
new 827bd36 Stop button + menu to stop a running workflow
new 406a023 Stop button + menu to stop a running workflow etc.
new 65a4edf fixing an issue when try to run workflow again and again.
new 016a9f7 AIRAVATA-225 Adding SimpleMath workflow.
new 5d8e47d AIRAVATA-225 Adding ComplexMath workflow.
new dbaa609 AIRAVATA-225 Adding MathService to utils.
new 19ac6e3 AIRAVATA-225 Adding AdderService and MultiplierServices for the test workflows.
new 79782ec Refactoring LevenshteinDistanceService.
new 4849195 Adding math service inorder to be used with ComplexMath workflow.
new f89ae64 Adding simple-math workflow test. AIRAVATA-225
new d321f9b Adding complex math workflow test. AIRAVATA-225
new 4bbd534 Adding the workflow AIRAVATA-225.
new 37409b0 Removing the following as they are not used in the tests now.
new 20ee2b3 dding tests to xbaya to test workflow tracking.
new aabfb9b Fix for AIRAVATA-244
new 676cae0 Fix for AIRAVATA-245
new bb81850 Removing unused inputs.
new b2aba00 Removing Multiplier workflow as it is not used now.
new 0c02ea0 Adding license headers.
new 9f26065 Adding the missing license headers
new 47cd88d adding tests for scheduler
new c616b3c Updated the CrossProduct workflow.
new c52372d Updating the port id of axis2server used in test samples. AIRAVATA-248
new a7a28b0 adding more tests and changes to registry-api
new 023c1c3 Adding complex-math-service for the samples AIRAVATA-248
new 1d93193 Adding levenshtein-distance-service for the samples AIRAVATA-248
new e083c07 Renaming the MathService to ComplexMathService. AIRAVATA-248
new 03af5ab Adding the samples to the root pom. AIRAVATA-248
new 3489695 Fixing a build failure.
new 2a8fd04 Fixing a test failure AIRAVATA-248
new 8342c2a Fixing a minor issue of build order AIRAVATA-248.
new de80a85 ading SearchTest.
new 47a9bae fixing compilation error.
new b5d16c7 Fixing endpoint urls in service wsdls AIRAVATA-248
new b64e7a4 fixing complex math service.
new eaf420e Fixing an issue with the .aar while deploying AIRAVATA-248
new 0e8034d Fixing an issue with the .aar while deploying AIRAVATA-248
new 4e9ef18 dding more tests.
new d6e2e66 Copying workflows to samples directory in distribution. AIRAVATA-248
new 9cd1b7d Fixing a regression.
new 2c99306 dding more tests.
new c4d3a40 Adding missing license headers.
new 25bb75a Removing the apache licenses being copied to standalone-server/lib directory
new 62313d0 Updating the licenses.
new 3bcca84 Updating license.
new 4f93a06 Updating LICENSE
new 18c854e not disabling monitoring icons when the workflowinterpreter is null bcos the user sohuld be able to monitor a workflow which is not started by xbaya
new b8ca79f Updating the licenses.
new cd54769 fixing issues in xbaya workflow Interpreter. Fixing https://issues.apache.org/jira/browse/AIRAVATA-254.
new 4640144 removing layout-*.jar. only xbaya seems to had any ref through pom.xml but no classes were using it.
new 5be14a5 Adding license for puretls.
new 2bf64e5 Removing the dependency to jsr173_api. AIRAVATA-257 To verify this change did not break existing functionality; 1. Ran all the samples -- Success 2. Build run with test -- Success
new 81a5638 not creating jar in assembly.
new 11bb622 moving schemas to resources directory.
new 1daf804 moving workflow-tracking schemas to resource folder.
new 6cc2303 removing xregistry url.
new 02bcc07 fixing a bug in monitor configuration menu.
new 4608bd1 allowing Xbaya client to invoke multile requests efficiently.
new d5c9339 fixing a bug when invoking gram service.
new a95c1c0 removing repository.properties from gfac-axis2.
new 166e526 adding repository.properties to distro.
new fff9ec0 fixing issues when try to invoke GFac service in ranger.
new 977ca6b fixing issues comes when executing workflow with description documents create using xbaya.
new 3132ac4 fixing issue with running gfac service only using xbaya.
new db2fedc setting standardINput if its "".
new 829931b fixing minor issue with setting Gram properties.
new 3a90a1b git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1229299 13f79535-47bb-0310-9956-ffa450edef68
new be5121a fixing workflow interpreter service to work with gfac service invocation.
new b3579bb adding xbaya.properties to build.
new 7a1e2f4 changing workflowinterpreter service to read gsi credentials from properties file.
new ed6780e changing the parent pom to a custom parent pom.
new 6eba54c Fix for AIRAVATA-260.
new 5c41277 fixing NPE during invocation of interpreterservice.
new d86bba5 fixing issue when loading owrkflow with given arguments
new bd7ec0c correcting resources location.
new ef45295 correcting resources location.
new 39ef224 correcting interpreter servcie url.
new 6c36ceb adding workflow status saving methods to API.
new 0d52614 adding workflow status update in to interpreter.
new 32839d1 adding provenance feature to workflowInterpretor Service.
new 2e1106b adding default settings for properties files to make sure tutorials works out of the box.
new f231d6d reverting the parent pom change to fix the build issues until comeup with a proper solution.
new 9f5a6d0 fixing NPE in WorkflowInterpreter service.
new 565f14f fixing NPE in Interpreter service.
new ab2448b refactoring registry api
new 38bf6fa refactoring registry api etc.
new ecadf22 fixing test cases not to try to write to registry if provenance is turned off.
new d49e0ed adding new profiles to build samples.
new f02ad19 adding api methods to save workflowOutputs.
new 96814da output save api impl
new 893fd41 update api to throw exception
new 3bfbb2d adding workflow output data saving feature.
new ff48b5f fixing unwanted properties from Node.
new 3a9c4fd adding more methods to registry api to query using regexs rather giving exact names.
new 34de37c Adding thread in Service Lifecycle.
new 55ffe14 adding new parameter to xbaya.properties.
new 0be648b allowing users to configure runInThread for WorkflowInterpreter Service.
new e4dc21a Updating airavataregistry api
new 06799fb Updating airavataregistry api etc.
new 3dd202d typo
new 89b869b udpating the AiravataRegistry api to return executions based on user
new 93471c3 saving user info once the workflow is executed
new 80370e2 Fixing a test failure.
new 165f369 Fix for AIRAVATA-263
new 8477d68 updating airavata registry api to save metadata
new 674e160 updating airavata registry api to save status through the enum
new 4b6ca87 Adding multiple port support for forEach.
new fa553cd fixing NPE hwen invoking GFac service.
new 3a07103 commenting out the XBayaClientTest
new 783fdc7 fixing minor issue with XBayaClient.
new 2857867 changing property name.
new f919573 change a parameter name.
new 86959dc check property exist user, status, time for workflow execution
new 2209f9e adding jobType.
new 61ef490 dding jobtype to UI.
new 963714c jcr node property checks + typo on returning null fix
new b86d1b8 updating api typo in airavata registry and adjusting api in xbayaclient to allow loading workflow execution through topic id
new 0bf3ce0 Fixing issues with multiple EndforEach
new 7cf2e2c fixing unnecessary commit.
new 1ccbdf3 adding workflow failed data.
new c34cf50 changing workflow status to failed.
new 28256aa minor fix in saving workflow output data.
new 10ab7fd fixing an issue with foreache.
new 63edf11 fixing CCE.
new ff2d32a fixing some threading issue which harm the long run of WorkflowInterpreter service.
new 69f70c1 Adding additional methods to the Service.
new 0616133 Additing two methods for tests.
new 5104b81 Fix for AIRAVATA-266. Added a test suite to run all the tests. Earlier simple axis server was started each time for each test. This removes it.
new 93f1268 Fix for AIRAVATA-266
new 78fbb84 Updating tests.
new ae0906d adding multiThreadedHttpConnectionManger for MsgBox Client calls.
new 36bf37f reverting the commit to add MultiThreadedConnectionManager.
new bbf76d1 fixing issues with forEach handling.
new 37caee2 fixing https://issues.apache.org/jira/browse/AIRAVATA-269
new 5b99f1c Setting an xml element in to output node rather setting misleading XmlElement.toString value.
new b8b2c4b do the cleanup right time avoiding workflow Rerun error.
new 4c49f7b fixing AIRAVATA-271,AIRAVATA-270
new 69a5002 Updated test.
new 7b51312 Updated test logs.
new a3416af Updated the tests with logging.
new 443a906 Enabling the tests in the test suite
new c043d22 Adding files to contain NOTICES.
new e499670 Updating the notice.
new aa76aa1 Updating the JCRRegistry api implementation to support reuse session variables & nodes based on a renewable and expiring ttl TODO: need to cache node children when node children are requested (this is not done yet bcos there is no way to know if the node children/properties changed in order to figure-out to throwaway the cache and retrieve the data again)
new 942d231 adding Licnese copying assembly plugin.
new 74edb5b Fixing indentation of the annotation
new cc33e5d Adding the LICENSE and NOTICE files.
new 7c95166 never mind... found it
new a71c991 fixing build error.
new 6ce5ec3 null chks for session and concurrent count + forceFileStagingToWorkDir attr saved in service desc
new f18de6f Updating the LICENSE/NOTICE files with missing licenses and notices.
new 8fcb1df git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1240349 13f79535-47bb-0310-9956-ffa450edef68
new 032c8eb session active chk
new 1cb1cac cleanup test
new e9a37c3 Updating license/notice files.
new a04634f session check in test
new cfdac00 session check in test etc.
new ff75617 Updating licenses.
new a3955d0 moving LICENSE/NOTICE file out of resouces directory
new 8aed140 Fixing the build error.
new db7f3d3 fixing https://issues.apache.org/jira/browse/AIRAVATA-283.
new 5a926df increasing default timeout value for messageBox client.
new 9bc2647 adding ws-messenger for the xbaya-gui profile.
new a5c7c5a changing the trunk to 0.3
new 3537419 moving messenger to attic as discussed in AIRAVATA-285
new e5ec02b fixing https://issues.apache.org/jira/browse/AIRAVATA-293.
new 0a56603 fixing https://issues.apache.org/jira/browse/AIRAVATA-294.
new 7fa0312 fixing https://issues.apache.org/jira/browse/AIRAVATA-295.
new a42f340 fixing issues with running interpreterservice without a listener.
new c922a0e adding registry-api for xbaya build profile.
new 22907af fixing build error.
new a253d2b fixing https://issues.apache.org/jira/browse/AIRAVATA-296.
new 236c158 fixing https://issues.apache.org/jira/browse/AIRAVATA-296
new efaef67 Checking porttype & method is null
new bebf4e6 removing qname
new f06d745 size update function
new 2f93740 Updating licenses.
new 266239c Updated license.
new d5e1529 Updating license/notice.
new 3b55b38 Update notice.
new c3f64c0 update NOTICE
new 8066ab7 Update.
new 931d9b4 update.
new 3db83a3 AIRAVATA-299 Removed default values stored in the Globus File Transfer Window.
new 3543683 desabling registry test until it get fixed.
new 6bcb8d0 nodeproperty change cache not cleared issue fix
new 61ad705 adjusting window sizes to support linux
new ca39f36 fixing https://issues.apache.org/jira/browse/AIRAVATA-305.
new bd94d50 removing the JCRConnection after serving the request.
new c7eeb71 fixing https://issues.apache.org/jira/browse/AIRAVATA-253.
new 660245a fixng https://issues.apache.org/jira/browse/AIRAVATA-267.
new b36aceb https://issues.apache.org/jira/browse/AIRAVATA-297 + session check in registry BE
new a9333bc commenting out the sys outs
new 5c78eb1 fixing https://issues.apache.org/jira/browse/AIRAVATA-286.
new e6a49c5 adding cross product for for each + repeating parameter issue fixed
new a23cbe1 Fixing a test failure.
new bf41c0b changes to the build system.
new e2f83e8 fixing test failure and NPE.
new 859a724 fixing registry-api tests.
new 84bf535 fixing a build issue.
new 36ca830 adding validation to client site to validate the given URL's.
new 44c47e9 AIRAVATA-309 Adding the initial version for the registry migration tool.
new e43ad3b AIRAVATA-309 Introducing a util class.
new 89f36bf Fixing NPE
new 8776ab3 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1292953 13f79535-47bb-0310-9956-ffa450edef68
new 191d8c2 AIRAVATA-309 Fixing the save order.
new 8604bd8 Fixing NPE
new 967c8a6 Adding the registry-migrator to the root pom.
new 9042b9e AIRAVATA-309 method efactoring and adding few debug souts.
new c1f750b AIRAVATA-319 Airavata-client module.
new d7049b5 adding new service to system, by exposing registry api methods as a service.
new f9131c6 adding new component in to the pack.
new ff70794 AIRAVATA-319 Moving XBaya Client to a separate module.
new 45f3a56 AIRAVATA-319 Renaming the client.
new 06436e0 Copying airavata-client to lib directory.
new 225e082 removing unwanted test.
new 02fa85c adding codegen to airavata-client to create registry-service stub.
new 015b091 Connecting to a remote registry.
new 6bf3877 Reading the configurations form a properties file.
new 51feb87 AIRAVATA-309 Adding constants class
new a27d808 AIRAVATA-309 reading the credentials through a properties file.
new 6ea1fb3 AIRAVATA-309 Fixing NPE when accessing a remote jcr registry.
new 6cb1119 Fixing concurrent modification excpetion.
new 5750daf Refactored XRegistryMigrate.
new 9e26d94 Renaming the class XRegistryMigrate to XRegistryMigrationManager
new b4516e4 Getting the properties file from the script.
new 38c4463 Fix for AIRAVATA-326
new dc49474 Fix for AIRAVATA-327
new eec0b72 Removing setting of default values to application description.
new 0f139a7 AIRAVATA-328 Setting the inputs to service.
new c5939b1 AIRAVATA-328 Setting the outputs to service.
new 8a02228 Setting parameter type to the service description.
new 9831f53 AIRAVATA-328 Fixing an issue when setting the inputs.
new b34975b AIRAVATA-328 Fixing an issue when setting the output types
new 910db7e removing the reduandant method.
new 2f37c0a Adding documentation to methods.
new 870b57b Adding missing license headers.
new 4175c6a AIRAVATA-309 Moving the deployserviceonhost logic.
new eb5d6a1 AIRAVATA-329 Adding a util method
new 9dc1abb AIRAVATA-329 saving app descriptions with the same name in Airavata Registry(By saving under a different unique name ie.originalName_id)
new 55ee13c AIRAVATA-329 Additing a util method to create a service description from a given name and a bean
new 0aa17d4 AIRAVATA-329 If there are multiple service descriptions with same name, the latters ones are renamed while migrating to Airavata Registry.
new 300f3ea AIRAVATA-309 Migrating the gram applications.
new b361cd1 Fixing NPE
new 9aa14fa AIRAVATA-309 improving a util method.
new b6d5976 Fixing a NPE
new c687e6a Populating the project name of the gram description.
new 85491e9 AIRAVATA-327 Setting walltime,min-memory,Processor-count
new 12b7b90 Fix for AIRAVATA-334
new 5668c97 Adding StdOut and StdErr to the gfac-schema. These were mapped to xsd:String schema type. TODO: Need to find a better way to map this to xml schema type.
new 301c36f AIRAVATA-336 Adding exception handling with proper error messages.
new a118157 AIRAVATA-336 Adding the Exception class.
new fbdb5bc AIRAVATA-336 Adding log messages.
new 442a144 Adding missing license header.
new 9f435f7 Removing redundant method.
new 37e8d9e AIRAVATA-309 shell script for running the xregistry migration tool.
new e788bf7 Copying the registry-migrator jar to standalone server dir.
new 82c8623 Updating the migration script.
new d9e31d9 Fixing NPEs.
new fe55038 Updating the migration script.
new c858670 Adding dependencies needed for xregistry-migration-tool.
new d214d80 Refactored the xregistry-migrator module.
new c66eb48 Cleaned up unused dependencies.
new ea3cc6d Intorudced util methods.
new 53721fa Fixing the build error.
new 041af49 AIRAVATA-348 Build profile for airavata client.
new c1847b6 AIRAVATA-348 build profile for registry-api.
new d06442c Fixing xbaya profile build.
new a84a1f3 updating airavata client to list workflow ids, list inputs, run workflow given the workflow templateid & inputs
new d504676 just comments...
new 5ad2539 throw exceptions
new b0a845b set wsdl b4 retrieving workflow inputs
new 0374820 overloading runworkflow to include user & metadata
new ee88daf adding applicaton mock location
new 13ad398 a rough template for application description
new 2147100 AIRAVATA-332 Sample test case to run a MPI job on Ranger
new 79296d4 AIRAVATA-332 Adding the sample hello world mpi application.
new 2b33ec0 AIRAVATA-332 Adding the schedular script(PBS)
new b139fc1 Adding license header
new a4183cb Making the util method public as it can be used from other modules.
new 00332cf Fixing a minor issue in the GramProviderMPITest.
new 17ca2e7 Adding the dependency to registry-migrator module as the MigrationUtil methods can be used in this module.
new b2578a1 allow initializing the gfac service on a thread in order to let rest of the webapps to start (jackrabbit webapp needs to start for the initialization to work). also added 10 sec delay of init just in case
new 60c15c0 adding thread initialisation for xbayaservice + adding delayed retry for gfac url registering service if url registration fails with a registry exception (can happen when the content repository is not yet available)
new ea34398 script to setup airavata & jackrabbit on a tomcat
new 901d0c1 help update
new 1ad4a07 handling the case where the root node session has expired
new 7a1cdf3 handling the case where the root node session has expired etc.
new 5880d4f Patch for AIRAVATA-331.
new f2c28ee Adding a readme for sample mpi application.
new c9e288e Removing the schedular script - scheduler_sge_job_mpi_helloworld
new 816553b AIRAVATA-298
new 7ceb281 fixing xbaya multiple refresh for single action issue
new c29b6a4 return the original url after validation
new 24b177f adding input value update from properties file functoin
new 788bd3f saving and loading the env variable from the model obj
new f9fb8cc Test csae for Pwscf service on Ranger.
new a41761c Adding MPI Test case for Ranger.
new c00d113 removing a redundant test case.
new 4d25e52 adding temporary scratch dir, to be removed later when the sandbox for airavata is created
new 5520e97 initial dump of xbaya-web poc
new e4025a3 refactoring WorkflowInterpreter Code.
new c9d6b1f have to do this to update my password. will remove the file
new d09b593 Creating GFac API so that it could be used in Interpreter too.
new a86e8bf using newly added GFac API in GFac Axis2.
new e7a6f38 adding Util method.
new 1f938bb putting method in to Utils package.
new 9e3d7a3 adding embedded gfac feature to WorkflowInterpreter.
new e910adc adding configuration parameter to run in embedded mode.
new abc7223 removing unnecessary parameter.
new e87d6c2 fixing build error.
new a4bbac9 loading preconfigured hostDescriptions.
new e3e749a Increasing the sleep interval.
new 1f4e294 Updating the readme.
new ffe98f2 adding new configuratoin files to build.
new 11b3622 Fixing NPE during embedded mode of XBaya.
new eb5572c adding minor changes related to gfac/xbaya embedded mode.
new afc9e80 fixing errors during startup.
new fab4836 Fixing NPE during embedded mode invocations.
new f6f38ea Fixing more issues with Embedded version of xbaya/gfac.
new 9cf47a4 removed the import
new 73eeb88 https://issues.apache.org/jira/browse/AIRAVATA-360 https://issues.apache.org/jira/browse/AIRAVATA-361
new 143e49b minor feature improvements with embedded interpreter feature.
new 3368bb5 fixing issues with invoking workflow Interpreter service using XBaya menu.
new f1ca0a9 fixing some test failures..
new 7b6f21d commented host configuration for steele and forge as need to test before exposing.
new 25e245d updated trestles description
new d88b4fb fixing https://issues.apache.org/jira/browse/AIRAVATA-368.
new 0bd4637 Fixing https://issues.apache.org/jira/browse/AIRAVATA-369.
new e3ccfff we remove the undefined AppDescriptors.
new 702ce27 fixing https://issues.apache.org/jira/browse/AIRAVATA-377.
new 80f3f95 Fix for AIRAVATA-378.
new 248d68a Fixing a test failure.
new 3877d74 gram advance options ui update + temp dir autofill when exec filled in app description
new 47dab03 Adding a sample xregistry file that can be used for the XRegistry to Airavata Registry migration.
new 893a943 Adding xregistry.properties file to the distribution.
new 6a2a1db fixing https://issues.apache.org/jira/browse/AIRAVATA-380.
new 5511d9e fixing https://issues.apache.org/jira/browse/AIRAVATA-381.
new 38788e2 moved newinput out of the loop as there can be other type of inputs. AIRAVATA-381
new 3423fff fixing an isssue when using forEach with gfac service.
new 4f7938c fixing https://issues.apache.org/jira/browse/AIRAVATA-385.
new 83518c1 fixing https://issues.apache.org/jira/browse/AIRAVATA-386.
new 0e770a4 renaming the file to template, so can have local files with changes
new 9a6aae8 updating hosts with ember and adding template information.
new 170bc45 AIRAVATA-371 using "echo.bat" for testing when compile on windows
new 44b55c0 Adding a testcase to test file transfers
new d02d401 Setting the type for input
new d68429a fixing https://issues.apache.org/jira/browse/AIRAVATA-392.
new b3e65f6 fixing https://issues.apache.org/jira/browse/AIRAVATA-393.
new b8e763a Adding option to add maximum memory to address AIRAVATA-389.
new 2e86dde deleting the target added by mistake
new 4c20bfa fixing https://issues.apache.org/jira/browse/AIRAVATA-384.
new c061ea2 fixing gfac-invocation error.
new 322f218 Moved yfilter to ogce archiva maven repo and removing this extra repo.
new 2c5b87a Moved yfilter to ogce archiva maven repo and removing this extra repo.
new 42db756 fixing a testCase.
new 5177ef1 to fix AIRAVATA-394
new e76ac42 fixing the type issues in FileBreedGramTest
new f6f81ac supporting ArrayTypes.
new 7b2970f fixing issue with arraytypes.
new 8e9852b fixing https://issues.apache.org/jira/browse/AIRAVATA-381.
new 50ff854 removing unncessary repos
new 00378aa reverting commit 1329916, this breaks the invocation of the next node after a endforEach, during output reading.
new 5b8d038 Fix for AIRAVATA-399
new 9afc3ca fixing https://issues.apache.org/jira/browse/AIRAVATA-401.
new 20c3066 Removing some non-printing characters that were in the INSTALL file.
new 1d6a055 introducing xbaya execution mode
new c05cd59 Fixing https://issues.apache.org/jira/browse/AIRAVATA-405.
new cd1d5c6 fixing https://issues.apache.org/jira/browse/AIRAVATA-405.
new a17eba2 fixing https://issues.apache.org/jira/browse/AIRAVATA-391.
new 7a8d2b6 disable workflow mouse click editing in monitor mode
new 96ea398 Updating info to build a jnlp
new ccce11a Updating webstart pluggin version and formatting pom
new 899ba50 fixing jnlp generaiton issue with xbaya-gui.
new 8bb9b8f Updating deployment configuration in JNLP
new 5f54916 Adding commented improved jglobus jars, when everything tested we can uncomment them.
new cc28d87 Updating all pom's to ensure all modules will use a airavata- prefix. Addresses AIRAVATA-407
new 1bc63ce Changing the jar names in bin assembly as well to fix the jenkins build.
new b10def5 Removing unncessary legacy wsmg jar dependency.
new 400254f Updating trunk with releases 0.2 branch
new edd914c changing the WorkflowInterpreter Service API.
new bab9ce3 fixing AiravataClient to sync with WorkflowInterpreterService API changes.
new 2a9be85 monitor function update
new be97aea monitoring with a listener + keyboard+popup_menu delete disabled in monitor mode
new c6aafd1 Doing more changes to use Worfklow-Context header in Airavata Client.
new 44a6735 fixing test failure due to recent changes.
new 30583bc minor changes to the client to work with a gfac service.
new d1d8809 refactor for future benefit
new cc36adc comment on a exception
new e5fcbb7 gfac url from registry + creating builder after clientconf setup & refactoring it
new 5864e38 removing duplicate dependency
new 7b638f3 updating distribution license and notice files from the release branch
new e6805ed Updating module pom's so all skipTests flag is read from parent pom. test-suite is an exception. Also disabling ws-messenger distribution from default built as the parent distribution includes messaging components.
new 6f0742f Fixing Context header.
new 8ff37d2 supporting ContextHeader to parse to WokflowInterpreter from the client code.
new 3dd505d Changes to fix Airavata Client failures.
new 71499bc samples binary aar files are already bundled with standalone server. The source is added by mistake. Addresses - AIRAVATA-398
new e147a12 Removed the unncessary include. Instead this should use org.apache.airavata.common.utils.XMLUtil
new 4b6f333 Updating meta files with 0.3 release info
new 68eda3c fixing a test failure.
new 0baaf6f adding the workflowContextHeader in to ThreadLocal.
new 8d1b79f reading the outputStaging directory and do output Staging if use specify a directory for output Staging.
new b32f5a9 Bumping trunk to 0.4 version
new 5267d77 fixing output Staging support.
new d31854b Minor fix to Interpreter Skeleton.
new adbaf08 toolbar group existance & button check + new workflow graph for a graph canvas set editability update call
new d991fb5 https://issues.apache.org/jira/browse/AIRAVATA-414 - Decoupling model from controller/view step1 [removing gui obj from node & rearranging classes to different packages to isolate model objects]
new 2813339 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow model refactor step 2 [splitting classes rearranging functions]
new 48451c2 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow model refactor step 2 [splitting classes rearranging functions] etc
new 8adf9e5 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow model refactor step 2 [splitting classes rearranging functions] etc
new 80df06c https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow model refactor step 3 [package renaming]
new a65926b https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow model refactor step 4 [refactoring model packages to new maven module]
new 761c4bc https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 1 [package renaming]
new ccbee13 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 1 [package renaming] etc.
new ef4ca6a applying patch by lahiru
new 9e2f214 https://issues.apache.org/jira/browse/AIRAVATA-415: patch by milinda
new f6a63b6 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 2 [package rearranging, class rearranging]
new a809642 removing empty packages
new ed57856 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 2 [package rearranging, class rearranging, adding compoenent registry controller class]
new afa38fc https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 2 [package rearranging, class rearranging, adding compoenent registry controller class] etc.
new 405d2d5 renaming workflow-model module to workflow-model-core
new ca5ae9b moving workflow-model-core module to a nested maven module (so that i can introduce workflow-model-ui later)
new fea17ab https://issues.apache.org/jira/browse/AIRAVATA-417 - patch by Pedro (pedrorcs)
new 833d787 https://issues.apache.org/jira/browse/AIRAVATA-414: xbaya refactor- workflow controller/view refactoring step 2 [moving all gui related functions off from xbayaengine to xbayagui class]
new 4e87cfe adding experimentID to owrkflow-tracking-context.
new 6c50f61 creating the sandbox area and moving trunk/scratch into it
new 7e04e11 fixing https://issues.apache.org/jira/browse/AIRAVATA-421.
new 2721745 adding input File staging support for URIArray Type.
new fef4348 more fixes with input file stagin.
new 6dace9a sending failure notificaiton during exception occurances.
new 05c40cb removing xbaya engine from workflow interpreter
new b731bc9 remove myproxy credentials off from workflow interpreter + wrapping some of the parameters to the configuration object
new d7ffbe3 NPE issue fixed (engine.getGUI() is not set yet)
new 14c05f7 fixing the test run issue (wrapping the mode details -server/gui- in to the configuration since now the constructors for the xbaya are shared among server/gui invocation of workflow interpreter)
new 3d974db adding rest of the parameters to the workflow interpreter configuration object
new 575576f fixing https://issues.apache.org/jira/browse/AIRAVATA-411.
new 20e2fcb fixing https://issues.apache.org/jira/browse/AIRAVATA-425.
new 5ced7ec fixing file staging issues commited to branch.
new 2624d4e supporting of changing the size of the xbaya ui positioning.
new cec5283 patch by lahiru on 29.05.2012
new 9472646 handled output directory generation. AIRAVATA-432
new 57ce948 Fixed the variable constant. AIRAVATA-435
new 75330b3 typo on embeddedgfac parameter + getting registry object from credentials in properties file + fixing offline to true by default
new d1f8199 fixing https://issues.apache.org/jira/browse/AIRAVATA-434 in trunk.
new c10460d Added method to gridftp server directories. AIRAVATA-436
new dfef0db Added null check incase output is not provided in stdout.
new fed5508 Fixed AIRAVATA-436 to handle URIArray output types and AIRAVATA-442 for gram errors
new 64947a5 https://issues.apache.org/jira/browse/AIRAVATA-434
new f7eaef6 fixing https://issues.apache.org/jira/browse/AIRAVATA-460.
new 29cf6a8 patch by lahiru for new feature
new 61e87a9 removing extra notices as per dsicussion on legal-discuss
new 8f5358a removing unneccesary 0 byte notice files
new 81a1f05 remove unnessary assembly, dist and resources directories within modules
new 17b1928 adding the missing disclaimer configuration
new 13ef5e6 deleting the unused notice file
new 21ce430 fixing test failures.
new a523e17 patch by lahiru
new b55f68b branch patches applied to trunk
new ff0ce1b fixing https://issues.apache.org/jira/browse/AIRAVATA-466.
new 184c805 Applying patch given by milinda for jira https://issues.apache.org/jira/browse/AIRAVATA-464.
new 05fe41a Fixing a NPE.
new 3719e21 Fix for AIRAVATA-470
new 0e37845 fixing cpu usage issue with xbaya.
new b1d9189 AIRAVATA-471 Adding a sample workflow.
new 352f0c8 AIRAVATA-471 Adding a sample workflow.
new 5cc546c commit discussed on mailing list and AIRAVATA-444
new e96c87e commit to fix for-each in case of outputs are produced in output folder. AIRAVATA-444
new 311d85d AIRAVATA-472 Adding a test case to cover foreach use.
new 8467050 AIRAVATA-472 Adding the for each test to the test suite.
new a724f6d AIRAVATA-472 Committing ComplexForEachWorkflowTest.
new ad3a6ad Adding a test case to the test-suite
new 1aeef7b Adding a ForEach testcase to the test-suite.
new 8c9ac85 Adding missing license header.
new a762e89 Addince missing license heades.
new e7ee96a AIRAVATA-476 Workflow to demonstrate echo on Ranger.
new f2afc5b Fixing a typo that will result in running a wrong workflow.
new def80a6 branch fix applied to trunk - updating optional params
new cd8ecd5 removing mode and introducing the interactor
new 1d42814 removing the duplicate derby notice.
new 5c6b331 Updating the README
new 3a9fafc cpu 100% issue fixed
new 705774e fixing workflowInterpreter notification failure.
new 21e137e notifier issue for when running on interpreter server + refactoring
new 31ffa7d Providing a temporary solution for logging issue in gfac-core.
new 0998c29 saving messagebox service url + workflow interpreter url to the registry + updating airavataregistry api
new c007680 saving message broker url in registry
new 969c3b2 adding constructor use registry to fill its config values automatically
new c9fbd52 fixing gfac-core test failures.
new 9906edf Fix for AIRAVATA-483.
new 630fb63 Removing the plugin from the default profile as it would not be needed to be built during the default build.
new d5b6392 fixing https://issues.apache.org/jira/browse/AIRAVATA-284.
new 523c2c6 airavata api update + some api interfaced implemented + refactoring
new 7052f9b API impl
new 7223d73 API impl contd.
new bd263d6 adding few api docs.
new d4cddb4 Workflow model changes for DoWhile. AIRAVATA-492
new 35c1f62 fixing https://issues.apache.org/jira/browse/AIRAVATA-487.
new 009d3ab For AIRAVATA-491 adding node gui to Xbaya and dowhile components
new 91b8245 added do while handler and changed workflow interpreter to call the handler.
new 238d388 Changed the DoWhile model. AIRAVATA-492
new 925ba12 fixing minor bug with scheduling implementation.
new 07001cb removing unwanted code.
new a50ef0d commented security context handling check as its not handled in Xbaya currently. AIRAVATA-494
new a02f5b8 Adding new method to Airavata Client to getWorkflowServiceNode Names.
new 0c85bea fixing build error.
new c3579ea Adding the method to fix the test issue.
new 61911c3 fixing build error.
new efa29b6 fixing build error and adding api documentation.
new ff5733a Changing the version.
new 396d47b Updating the script with updated jar names.
new c45655d Removing obsolete jar.
new 71f600d handle Do while. AIRAVATA-277
new ff24178 updating logo + https://issues.apache.org/jira/browse/AIRAVATA-488
new 2e5da42 Updating airavata-tomcat properties
new 720fd5a updating the script to allow dir creation when single file copy if the dir is not available
new 847c30e updating the host desc dialog with remote protocols + rearranging host to the bottom in app desc dialog + menu rearrangin in xbaya main menu for new workflow/app desc/host
new d9f8fc2 Updating the properties file.
new f123a54 Removing the registry-service from the build.
new 8d77cb7 Removing airavata-registry-service from the build.
new b91a85e organized imports and fixed AIRAVATA-505
new 33a3e6c Fix for IRAVATA-502
new 0036a7e fixing https://issues.apache.org/jira/browse/AIRAVATA-503.
new 83ce9ba fixing NPE during gridjob submission.
new 6ac1bac updating meta files
new 71d4126 handled parsing of output XML to get output value. AIRAVATA-499
new 87d5132 fixing a test hangout in trunk.
new c44400f updating UI labels etc.
new fb640c6 merging branch api changes with trunk
new 7d95b27 minor change in echo sample operation.
new 882cb76 wrong variable was set as output.AIRAVATA-499
new 087cdfa Fixed the object comparison.
new bae773d Adding the missing license header.
new 82d2dc6 Removing unused files.
new 47dc526 Adding missing license.
new 4f8e727 Adding missing license.
new 96f4cd6 Adding missing licenses.
new eadc450 Adding license.
new c0695db Adding license.
new bf74bfb Adding license.
new d7062c3 Adding license.
new 17d8667 Add license.
new 615048a Adding license.
new 5d5daca Adding missing license.
new 44a8fa1 Adding license.
new 8733e81 Adding license.
new 1a8aa5d fixing issue with AiravataClient.
new 2bf4744 Fixing issue with WorkflwoContext Header parsing from XBaya to Gfac.
new e9efb35 picking host from Worfklwo context header even thought its not set in ot that service.
new 972b0ec https://issues.apache.org/jira/browse/AIRAVATA-509 : fix globus host data not showing when editing host desc issue
new fb8fb0b https://issues.apache.org/jira/browse/AIRAVATA-509 : fix globus host data not showing when editing host desc issue etc.
new 91d09dc https://issues.apache.org/jira/browse/AIRAVATA-509 : fix globus host data not showing when editing host desc issue etc.
new 08370c3 fixing Error during gram job invocation.
new 951b134 adding API docs for AiravataAPI.
new ce5fcf1 Fix for AIRAVATA-510.
new 2b890cf Copying the host.xml to the proper location.
new 148dcc2 Updating the ports of the copied files.
new d856e2e Copying the repository.properties to a new location.
new 074690d Updating ports of the copied file.
new 3d00905 changing deployment description dialog
new cad899e removing app node from reg browser
new 6e043a4 Adding liceance header.
new 0a5580e remove app edit
new bd0c85b validate presence of urls in registry
new 5fe51c1 udpating texts
new 27ad851 udpating tree node
new 37db75f setting queue name from application description.
new db13392 updaitng registry tree with new configuration nodes
new 9709e19 Fixing a NPE while testing tutorials.
new 0f2faec adding config icon
new 69bffcb updating API
new b399b2c adding context header builder passing to the API run workflow
new 6a7dbad updating the names of th eAPI
new dd09ed9 Changing the successful application registered Message.
new 53abdea updating text labels + picking up interpreter service url from registry
new 1774f74 introducing the version object
new a520c52 delete existing apps before updating service desc
new 10b0642 delete apps for service desc when service desc is deleted
new 27ce8a0 AiravataAPI object retrieving location change + disallowing creating airavataclient object by 3rd party
new 50cb2ff adding comments
new e2d79ec Adding jnlp.
new 675d49a Commenting the webstart-maven-plugin
new 2b5a0e1 Fixing build failure.
new 47bee1b Removed unused dependencies.
new 9a74cfa Updated the image.
new a24da3c Commenting the execution class as it is removed.
new 9883312 Adding the jnlp module.
new 1f9a611 Adding the jnlp module.
new ca9c592 fixing an issue with Workflow getting.
new 5427812 adding comments & overloading getAPI function to allow backward compatibility
new 009460d adding comments
new f76708a updating the API version to airavata version + NPE in host desc dialog when saving
new 26b269c Adding a method to the api to return a ExecutionContext.
new a2a2001 updates on labels and some refactoring
new ccc5f0a allowing pluggable proverance registry handler + refactoring
new 9eb7239 Remove the dependency.
new 1495d09 fixing a NPE during startup.
new 94560c8 adding comments to the abstract class
new 18f09df adding provenance handler sample
new 4dd0164 proper comments & reordering the functions for better readability
new fa1ee7b removing the jnlp module, fixing the xbaya-gui build to have a jnlp
new c89def0 fixing test failures
new 97532f7 removed the reference to jnlp module
new 8aabb5e Fixing the Monitoring URL issue.
new 6ce289f removed the stale dependency
new 8ade3fb fixing test failures.
new 81a327e updating the API to save/get the workflow instance name
new d0d388f Fixing a bug.(Noticed this while running a workflow through InterpreterService).
new 67d64d0 removing simple-math-service from the build.
new 20687db provenance issue + msgbox&eventing url issue
new e644c75 chk for stdout type and assign directly
new 27b4a73 advance option update
new b4e50f8 providing stdOut support.
new f53194f supporting stdOut and StdErr.
new 20fc633 double click to edit + color chk using equal
new f6b0a68 copy content menu
new 02ed756 parameter view action
new 423c884 show status in experiment
new a25d8ee Updating the JNLP template.
new f2ddf34 Adding XBaya JNLP to the build.
new 196abf7 Fixing the test failure.
new b2c4084 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1361030 13f79535-47bb-0310-9956-ffa450edef68
new 0eebb42 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1361031 13f79535-47bb-0310-9956-ffa450edef68
new 8c076ed Cleaned up the pom.
new fb68502 Pointing to the registry url to the publicly accessible registry instance.
new 1964e89 Updating url.
new 1427fac throwing fault notification when ProviderException is thrown
new 476db37 Fix to resolve the jar signing issue, when starting the jnlp.
new 5133190 trim parameter values in browser node + allow specifying a workflow instance name
new 2ab9d75 updating menu caption
new fe5ad80 make experiment name blank initially & make it compulsory
new 606fb38 updating captionning based on workflow data availability and showing experiments eventhough workflow node data is not present
new ac72b12 load ursl when reg was specified in commandline
new ce94280 Fixed if output params are stdout/stderr only. AIRAVATA-520
new e07fb0f Reverting pom to 1340614. The JNLP additions were improperly inherited from a stand alone pom.
new 6b73d67 Updating the release notes to 0.4
new 2f54b15 adding the missing header
new 9f40d36 [maven-release-plugin] prepare release airavata-0.4-incubating
new 4b07284 [maven-release-plugin] prepare for next development iteration
new 00f3ad8 xbata workflow editor UI changes
new 1038316 Adding Kraken host description.
new 639eb51 reverting back to old body color
new 74f822e equal check for color and draw update for edges in workflow graph
new fb15d09 https://issues.apache.org/jira/browse/AIRAVATA-522
new 0be7459 Removed the unused import
new cff42e0 Removed extra notices
new b4faf13 Removing additional notices.
new f0ceca7 Removing additional notice.
new 0a7cf76 Removing additional notice.
new 6a138ca Renaming the sample workflow to a more readable name.
new b55a7c7 Enabling tests for default build.
new 97f2a0c Updating the pom version.
new db1df17 Removing unnecessary URLs from the POM. These wont be needed for the JNLP as these are populated through the registry URL.
new 698464e Fix for AIRAVATA-533. Thanks Amila for the contribution.
new 15c113d Fix for AIRAVATA-533. Thanks Amila for the contribution.
new 48c69b3 Applying patch given by Bathiya.. Thanks Bathiya for the patch.
new c42ec8b Applying patch given by Bhathiya for issue https://issues.apache.org/jira/browse/AIRAVATA-541.
new 3f865a8 fixing build error.
new bbe8f49 it is evident that we seriously need someone as a QA
new cbd93eb logic updates
new 2f644f3 showing true/false in control ports
new f74354d adding modification to cope with AiravataProvenanceRegistry interface.
new a5d719f supporting new Provenance Data architecture and new ProvenanceRegistry design.
new 11d0d59 Adding patch provided by Ye for AIRAVATA-456.
new 6ccfad9 Committing Ye's patch for AIRAVATA-546.Y
new 91d5a67 adding new methods to put workflowInstaneID.
new 365a5b3 Adding nodeType
new 9141a85 Adding workflowStatus
new d2a7992 Adding toString methods for enum values to be used hwen saving in to repo
new ca8ea3e Chaning names in to workflowInstanceID in correct places.
new e472318 Committing teh patch added by Ye for AIRAVATA-456.
new b49c074 moving registry migrator to attic as it is not actively used, if needed, the module can be checked out from attic and used
new 1a87bbd removed dependency for registry migrator
new e6270a8 changing the enum type to remove call to migrator
new fa01bf2 Removing references to legacy xregistry
new 5cd0346 changing the sql and minor fixes to provenance-impl
new ed0de59 moving the tests to java.
new 877e0a4 fixing build error in provenance-registry component.
new ccc8205 Patch for AIRAVATA-338 Thanks Bhathiya for the contribution.
new 9ffb450 Applying patch provided by Ye Fan for issue https://issues.apache.org/jira/browse/AIRAVATA-546. Thank You Ye for teh contribution.
new b225954 verified and applied Chathur's patch for AIRAVATA-559
new 00d6250 Fixing some issues with provenacne impl
new 0b30b79 fixing build failure.
new a8e0921 removing sling integration classes & some refactoring
new bb17dbe patch by bhathiya (getServiceDescription_2.patch) https://issues.apache.org/jira/browse/AIRAVATA-541
new 05d8205 Applying patches given by Chathuri Wimalasena for issues AIRAVATA-544 and AIRAVATA-545.
new da67e06 minor chnages to handle notification before storing data in to db using provenance registry.
new 5b1a346 Fixing some isssues in ProvenanceRegistryIMpl.
new 8f4c048 Adding provenance Registry in to build system, but this will not be the default usage.
new 4a73c46 moving persistent.xml and adding commented information to repository.properties with how to configure provenance registry.
new 8b95272 removing stale libs folder
new c8c697b Adding OpenJPA NOTICE to binary notice file.
new 1307e50 adding license header
new cdca9e3 AIRAVATA-563. Changed to use bash shell
new da55f92 fixing issue with updating configuration urls during first run.
new e8631f6 implementing the getWorkflowStatus method.
new 5a5c588 adding new registry API for review
new 4c76dad adding initial dump for jpa registry
new e4703ab introducing AiravataRegistryFactory class
new 11b5fd8 adding configuration registry & resourcemetadata
new c2ca0c5 update api after review
new 620f247 commiting another getter method which will be used in xbaya-gui.
new 5f40172 committing the patch provided by chathuri in https://issues.apache.org/jira/browse/AIRAVATA-562.
new c2d9ad9 fixing build error.
new 82f284d Adding new JPAREgistry implementation.
new a153d35 Addnig missing class.
new 63cdbf4 implementing AiravataRegistry2.
new daee0c2 Applying the patch provided by Chathuri for AIRAVATA-562
new 5e5420a adding more implementation methods.
new 3afd5fb adding more implementations.
new dfc7ff9 applying a patch from Chathuri for AIRAVATA-562
new 90454ea more methods implementations.
new 8cb84c4 More implemetnation methods.
new 1d953aa https://issues.apache.org/jira/secure/attachment/12544271/AIRAVATA-562.6.patch + refactoring
new e5fdaa7 add few more config methods
new 6912500 overloading save method
new 4b52803 removing the save overload & adding remove function to config remove
new 7e0b88f updating gatewayResource class
new afda311 using new AiravataRegistry2.
new 149caba adding patch from chathuri
new 8114d5c new reg api integration
new 5551943 new reg api integration
new e6334e1 new reg api integration
new 4c8a208 new reg api integration
new a4dae53 applying patch from chathuri for AIRAVATA-562
new ee3797d fixing a compilation error
new 6fcd14e committing some refactoring code.
new 982981d more refactoring.
new 9e67000 moving some mothods to utils
new a7016a4 minor changes to new structure
new 1789806 updating xbaya to support new registry api
new 1546e24 updating airavata client to support new registry api
new 35105f3 AIRAVATA-564. Incase of single element and single string we run one time
new 3546625 AIRAVATA-548. Added stringarray to handle multiple outputs in STDOUT
new 1512e3d AIRAVATA-548. Changed exception to give proper message
new 2f5ab5b applying patch from chathuri for AIRAVATA-562
new 81e87f7 adding Util method to registry.
new 0e5dfb8 using new registry implementation in gfac-core
new a6f0da1 using new AiravataRegistry2 in gfac-axi2.
new f5b4122 using latest implementation of registry in broker and messagebox.
new 881db19 updating jpa models
new bfcf59f fixing https://issues.apache.org/jira/browse/AIRAVATA-566 and more changes to use new registyr-api
new d736785 adding new jars in to build system.
new ca2ae59 commenting the tests.
new d64cbec fixing build errors.
new 67fc20f git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1383117 13f79535-47bb-0310-9956-ffa450edef68
new 81fce1d adding new regstry-service to handle regisry initialization.
new 9f377d1 fixing null pointer exception
new 53c7812 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1383473 13f79535-47bb-0310-9956-ffa450edef68
new a354c81 applying patch from chathuri for AIRAVATA-562
new 23b70a9 more changes to new registry-service.
new 88a33da fixing build eror !!!
new 06e9346 committing more changes to registry-service.
new 3ccc5bc changind default values of repository.properties.
new 59ff284 adding isactive method nad removing closeconnection method
new b5e697f adding patch by chathuri for AIRAVATA-562
new 7c58cd6 adding properteis file for xbaya.
new 31a748d ADding data during startup.
new 024af90 fixig error during xbaya startup..
new 963e44e adding derby script.
new e497ea9 fixing configurations not saving issue
new 7232202 applying patch from chathuri for AIRAVATA-562
new 71f52bc updating isExist method of GatewaiyResource
new 58d31ee fixing entity manager not being set issue
new 6970604 fixing a issue in getServiceDescriptor and getDeploymntDescriptor methods.
new 8490bd7 applying AIRAVATA-562.13.patch for AIRAVATA-562
new 4e7be3b updating existing resources to the database
new c1312c1 fixing user not saving issue
new bc26f36 updating models
new 6c5ab97 fixing gui issues when updating descriptors.
new 084d395 fixing data retrieving issues in jpa implementation.
new 06abd81 applying patch from Chathuri for AIRAVATA-562
new 7b3df03 fixing gfac url retrieving.
new 42938f2 fixing minor issues encountered while running hellow world workflow.
new cc5d0c7 Fixing more issues in gfac sdie
new abb2032 change the database script and modified the model and resources accordingly, applying patch AIRAVATA-562.15.patch by Chathuri
new be34e25 applying patch from Chathuri for AIRAVATA-575
new 0ed4e01 make provenance data to be saved ini to registry.
new cd4f7c6 fixing exception thrown during data saving.
new 7393d65 adding provenance registry sql
new e485fcf fixing shutdown issues.
new b97361c applying patch AIRAVATA-546.patch by Chathuri
new 2a1b8a0 updating provenance registry api
new d4ea612 updating provenance registry api etc.
new de3aefb fixing an issue during restart.
new 334e420 adding missing exception.
new d9181c2 completing provenance registry api changes, its impls & usages
new bfc169d fixing unnecessary parameter set
new 02b8338 aplying patch AIRAVATA-546.1.patch
new b876a82 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1387690 13f79535-47bb-0310-9956-ffa450edef68
new 6bee146 git-svn-id: https://svn.apache.org/repos/asf/incubator/airavata/trunk@1387705 13f79535-47bb-0310-9956-ffa450edef68
new 06ff6ea change varchar fields of some tables to BLOB and update the model accordingly
new 227c40f Airavata TLP graduation
new 039f167 tetsing airavata commits and updating AIRAVATA-577
new ef5c2f1 test commit
new 2940b0a refactoring class names & updating airavata API to reflect the new experiment data structure
new be72769 applying AIRAVATA-581.1.patch
new 49727d3 removing auto increment field from Project table
new 1bdefd7 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1388559 13f79535-47bb-0310-9956-ffa450edef68
new 44a671f applying AIRAVATA-581.2.patch for derby support
new 9efd276 fixing the issues in provenance data save, adding default project & adding experiment and workflow instance if not present
new 15b2991 save the experiment name
new 7226ed0 applying AIRAVATA-582.patch
new d301be9 fixing compilation errors
new d558677 updating poms
new 6f9e285 create experiment if it exists
new 5e8797f create node data if not present
new 6ccfec7 change mysql db script
new eaa5b9f supporting creating the node instance when it is not present
new 95632cb change published_workflow table
new 25c1144 user workflow pk model class update, few typo fixes in api + jpa resource classa
new 7593d34 fiixng interpreter issue.
new 245d0e5 updating pom's to remove incubating to address AIRAVATA-577
new c965a82 commenting the tests to get the builds going, need to update the tests to registry upgrades
new 5302246 calling save() on status update & fixing typo errors
new 459a642 removing run button from launch dynamic wf
new b445d4e fixing issue in experiment data
new 26af8da fixing registry browser to load experiments
new 2654251 chking status is null b4 setting it
new cab7faf removing invalid experiment name update + null check for parameter data
new ffa1c0c save template name
new c627c73 applying AIRAVATA-556.3.patch
new c15ced0 removing jersey dependencies
new e540ea8 build fails randomly due to a missing version in jackson-core-asl. This dependency comes from amazon sdk. Bumped the amazon sdk version to mitigate the issue, the amazon funcationlity is due for a spin anyways
new c5af55a adding aar pluggin to webservies to deploy to comcat
new 3b58208 added a method to check file extension and set trasfer type. AIRAVATA-584
new cf44654 fixing axis2 anonService creation.
new e8b8e27 fixing axis2 anonService creation.
new 0128aad allowing 3rd party registry connection data provider
new b0c4e84 allowing 3rd party registry connection data provider etc.
new 5b3da91 removed Jackrabbit dependency. (AIRAVATA-589)
new 9fa74a4 fixing array index output of boudn exception.
new f041507 Fixing Array index outof bound
new 7f73f44 stopping unnecessary property file loading + check to see value exist for the key b4 trying to access it
new cef88ea updating the xbaya version
new 078f8ff fixing error handling issue in airavata.
new 6d4aabf allowing default gateway & user specified from a 3rd party class
new a7f8444 allowing default gateway & user specified from a 3rd party class etc.
new 5375232 allowing default gateway & user specified from a 3rd party class etc.
new 2908f75 Temporary fix for WA for JNLP dependency issues caused by parent pom. Adding a stand alone pom to build a JNLP.
new 0e1ed93 applying AIRAVATA-591.patch and some other improvements
new 2740484 more changes with new registry implementation.
new 3476c51 applying AIRAVATA-594.patch
new c74a347 Adding property files as discussed in - AIRAVATA-383. The code needs to be changed to reflect these properties.
new 879bb06 chk to see if hte host descriptor exists b4 saving
new 629752e convert the printstacktrace to a log warning
new 6e25add temporarily reverting patch in rev 1394252
new 947157f fixing missing space in the sql query - AIRAVATA-594.2.patch
new 6575d40 adding run icon to run on interpreter menu item
new 394a932 fixing https://issues.apache.org/jira/browse/AIRAVATA-260.
new acedc32 retrieving experiment meta information only
new 0175939 implementing getExperimentMetaInformation and getAllExperimentMetaInformation in ExperimentDataRetriever class
new cbafc87 adding reg ex to select query
new 35c8597 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1394744 13f79535-47bb-0310-9956-ffa450edef68
new 9af18a6 null chk for service name and host name when adding/updating application descriptor
new f093361 increasing default timetout in client.
new 0785e11 allowing start monitoring on users choice + allow launching the workflow on a thread or not
new af56195 Fix for test failures.
new f00686b allowing users to set timeout value
new 1a106cb missing exception class
new ba36d34 adding logs to methods
new c19ab82 fixing all nodes not being shown in monitoring panel
new 8721908 refactoring ExperimentDataRetriever
new 1159266 wait for the registry to contain experiment data before returning from the launch function when launched in thread mode
new cc048ff fixing build failure
new 470bd8f fixing the issue when run a workflow
new 73b5d98 do launch pre tasks out of the thread
new 0c2b610 Fixing Failure scenario.
new f0e9536 whenever you update the node status update the workflow status update time as well
new c38b261 Adding version tags to missing dependecies.
new 2b2318c AIRAVATA-517 Fixing the jar signing issue of the jnlp.
new b80e4ce Its better to have all application option writable.
new 5edf5fa changing the wrong static working directory.
new 0697360 fixing https://issues.apache.org/jira/browse/AIRAVATA-596.
new 2c815a0 Fixed AIRAVATA-597 to add junit jar version
new 43e3f3b adding tests to jpa registry resources
new a6b282f fixing AIRAVATA-601
new 5fd2f89 hiding registry url from launch workflow dialog
new 19b64ad fixing host descriptors panel not updating with edit host descriptors and add new host descriptors
new 1d2db31 start derby in the in memory mode for tests
new e7b19e4 start derby in server mode with in memory
new 6512355 fixing build failure
new 3e4715c git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1397457 13f79535-47bb-0310-9956-ffa450edef68
new fdf9230 adding abstract test class and extend all the other test classes from it
new 4ab15cb Removing airavata-registry-migrator from the bin-assembly as it is not there in the trunk build any more.
new 829835f removing multiple records in getList()
new d357a4d fixing build issue
new d14336e update test cases
new be84b93 updating application description dialog withnew field
new af823d1 updating application description dialog withnew field
new 456acad Updating nodecount ordering
new 53a063a increasing default timeout value
new cbf9c12 Updating the interfaces to have unique method names. If it didn't have unique names, the rest services will start complaining stating media type conflicts.
new 5eedfd4 Fixing an issue with overriding context header values
new 020377f Adding junit version in main pom as well
new 76df4ba Adding derby client for conveniance of standalone xbaya launch
new c780916 adding test for registry api
new 9c9a8d3 move common/registry-api to registry module and get rid of old registry API and its implementations
new 47a3842 increase the width of nodes when the node header font is bold
new 55a4bb9 Unified the property files and removed all duplicates as discussed in AIRAVATA-383
new e795b3e changing the defualt configuration to derby.
new d68022c adding start derby property
new be8411b giving proper error message when parameter doesn't exist
new e6cf3d6 fixing AIRAVATA-611
new 90c3e33 readProvenance method is not used. Changed reviewed with Lahiru. AIRAVATA-601
new d52846d Fix for AIRAVATA-595.
new e8a5e55 fixing logs issue in standalone mode.
new 7bd5ac3 Error was getting masked and now displayed coming to logs. AIRAVATA-612
new 59179ae change the log file locaiton.
new 0eadcd0 adding method to registry API to check whether experiment name exist and make experiment name field blank in xbaya
new 284a9a3 https://issues.apache.org/jira/browse/AIRAVATA-598 & part solution for https://issues.apache.org/jira/browse/AIRAVATA-229
new bd8e251 remove unwanted comments
new 25dce16 fixing parent form not set for add application dialog and add host dialog
new 70b5962 changng logging in to log4j.
new 1b41aec removing the deprecated ember machine descriptions.
new ca1c7c4 Revert commit 1400294
new 0fea435 Remove m2e added by eclipse
new e197fb5 Remove airavata-common-registry-api
new 55bb034 Use JCL as default logging library
new 758b8ec replacing the left over loggers with slf4j
new 090fd5e further cleaning of logging dependencies, the test cases could have used the sl4j-simple, but ensuring all of airavata modules use log4j and any appenders specified. Dropping in slf4j-jcl for routing any dependency logging based on jcl or commons-logging.
new 6cff9ea * Addressing AIRAVATA-613, AIRAVATA-614 and removed myproxy dependency in Xbaya. * Cleaning up assembly and removed distribution dependency on ws-messenger distribution * removed the jackrabbit binary repo
new 954248b reverting the aar plugin's added for convenaince. This reduces the binary from 115MB to 52MB
new e463a1e Adding 0.5 release notes.
new 4d28702 fixing AIRAVATA-615
new 817dff0 removing provanance registry module from commons module
new 1541dda Error was not thrown if property file don't exists.AIRAVATA-617
new ccda037 removing dynamic workflow invocation from the Run menu.
new 478a24b derby starting scripts back
new 83493c7 fixing build error
new cdcbe37 including startNetworkServer script to bin folder
new 9ffc260 add missing jars
new 1518911 fixing errors during shutdown.
new 7c56097 changing the logging levels
new 4d4ecf7 removing error during shutdown at the middle.
new 26e2850 refactoring thread classes in services
new 6c72f9a fixing AIRAVATA-618
new a30d2ea avoiding errors during ctrl-c before successful startup.
new 2a4e5b6 minor fix to handle proper shutdown.
new 6a152d3 fixng shutdown issue.
new 5332026 removing unwanted code piece from interpreter
new b3f8575 removing boolean return types from update methods of registry API
new 749bcc1 fixing date does not updating successfully in congfigurations and other tables
new 71fbad1 ascii art for airavata start script
new a74df6b updating the assembly to include logo.txt
new b03eb24 fixing https://issues.apache.org/jira/browse/AIRAVATA-259
new aaf72e2 set start derby by default
new a665ad3 branching 0.5 to open trunk for development
new 11eeb94 bumping the version in trunk, so development can move foreward towards 0.6
new 6de090a adding missing license header and excludes for rat check
new 7a40062 [maven-release-plugin] prepare release airavata-0.5
new ea68cdb [maven-release-plugin] prepare for next development iteration
new e08d05e reverting release prepartion to update scm tag
new 3df9fbe Update the SCM to point to branch for release plugins to work.
new 1bd143e [maven-release-plugin] prepare release airavata-0.5
new 9fe4def [maven-release-plugin] prepare for next development iteration
new 740a8ff Merging release branch changes back to trunk.
new 7dcf5b7 reverting the scm tag to trunk, and formatting
new e303768 fixing exception during workflow execution end.
new 217c430 Code cleanup for airavata client. Improved exception handling etc. AIRAVATA-626
new 15ff6b0 fixing AIRAVATA-628
new 4edd81b add functions to the API to return workflow inputs, return all workflows (published & private), work with published workflows from airavata api, search experiments by their name
new d36c02c add functions to the API to return workflow inputs, return all workflows (published & private), work with published workflows from airavata api, search experiments by their name etc.
new 37bca58 add functions to the API to return workflow inputs, return all workflows (published & private), work with published workflows from airavata api, search experiments by their name etc.
new 257611e adding annotations
new c93ec86 adding annotations to support serialization/deserialization + some refactoring
new 738ac45 adding annotations compatible with REST service
new 5fd54da allowing interpretor service to work with a simple xml input, without workflow context header.
new 9160312 Updating jnlp pom to have missing dependency.
new 4c0231c Adding the full airavata-server properties to this file. If these are not there and if we build with just the default properties file, airavata tomcat deployment will start complaining with NPEs because we have not added them to the configuration file.
new 7b0746d Reverting to 1407479.
new 16d5477 fixing issue during workflow run.
new 9506888 reverting bad commit done by Lahiru.
new 7ade103 removing boolean return type from update methods of registry api
new 8582008 adding airavata rest services to trunk
new 6052bdf updating pom
new 67112f0 updating descriptor client
new a9ec57d changing workspace project class map with REST implementation
new 65ba160 updating rest client methods
new ebf853b committing amilas patch for https://issues.apache.org/jira/browse/AIRAVATA-560.
new 5bdffde adding amila's commit for issue https://issues.apache.org/jira/browse/AIRAVATA-560.
new 1e9d672 adding missing file for amilas patch for issue https://issues.apache.org/jira/browse/AIRAVATA-560.
new 6a9c236 updating publish workflow client methods
new 3b90cd1 committing part of amila's patch for issue https://issues.apache.org/jira/browse/AIRAVATA-560.
new 65fdc73 updating provenance related client methods
new c039b04 Applying the patch given by amila for https://issues.apache.org/jira/browse/AIRAVATA-644. Thanks Amila for the contribution.
new be56a0c Applying patch provided by Amila for issue https://issues.apache.org/jira/browse/AIRAVATA-645. Thanks Amila for the contribution.
new 2eda2da adding basic methods to getGateway, getAiravataUser
new 704cf01 adding seperate module for REST client
new c8b3bf2 updating rest service methods
new c7f81dc deleting client classes from REST service
new 85cc04c replacing Airavata Client from REST client
new 8a5fcf6 adding new module for all the REST related sub modules
new 6c3eeaa deleting rest client
new c9656cb git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1410405 13f79535-47bb-0310-9956-ffa450edef68
new 22922db cleaning poms
new 7be50dc deleting rest service from top module
new f780903 refactoring monitor & stub out of xbaya
new bdb6584 adding monitoring module
new 6249b09 integrating security with REST client
new b5f9cee Applying patch given for https://issues.apache.org/jira/browse/AIRAVATA-646.
new 2170917 removing wrong configuration put for default airavata-server.properties configuration.
new 7e91e0e adding airavata client initialization method with callback impl
new dd5ff56 fixing https://issues.apache.org/jira/browse/AIRAVATA-648.
new bf18d2b adding all client methods to a single class
new cb5df95 Appying amilas patch for https://issues.apache.org/jira/browse/AIRAVATA-649. Thanks Amila for the contribution.
new 8cfc7da adding get service version
new f7d3e2d refactoring jcr component registry out
new 3e24e24 updating poms to have the new jar
new 80fb7e0 decouple node body color dependency in workflow execution
new 1599a01 refactoring the workflow interpreter - let the games begin
new 8815aa6 updating airavata client
new 60edbd2 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1411863 13f79535-47bb-0310-9956-ffa450edef68
new 798f4f9 move Callback interface to registry-api
new 4010022 updating airavata client
new 775fcdc updating API
new 6ac9d3c changing xbaya to use airavata client
new 4314ccf updating API
new f820c29 refactoring Airavata API to a factory class & overloading to get API object without credentials
new f5f4266 Applying amilas patch for https://issues.apache.org/jira/browse/AIRAVATA-658.
new 1ff9753 committing amilas patch for https://issues.apache.org/jira/browse/AIRAVATA-658.
new 6451d81 updating service methods to have a pool of airavataRegistry2 objects from the context
new 7fa8e7f commenting mysql dependency from pom
new ff52824 updating rest client classes to get serviceURL
new 84f8a02 updating interpreter util to hv nodeexecutionstate
new a804a78 setting config on initialize and call initialize at client api object creation in facotry
new cbf8f7d updating client
new 245c3d7 add the registry url to config
new 28f2f1c Changed exception handling
new 30975e2 Changed exception handling
new 42d4813 handle the case we do not provide the registry url
new 7eef8d8 fixing AIRAVATA-664
new 4b721bb applying amilas patch for AIRAVATA-666.
new f1cd3e2 Changed exception handling
new cf63f85 ServerSettings for Airavata
new d26e0cc introducing registry.properties file & registry settings class
new e3d91de fixing the test suit break
new bd2281a fixing AIRAVATA-665
new 38c11cb fixing xbaya issues
new d267291 allowing registry.properties file in conf
new de9c2f4 overload getsettings to have default val
new 9db5187 overload getsettings to have default val
new bcca64c update reading property files
new 8f49ad7 removing airavta-server.properties dependency
new b05ef56 fixing test failures
new 02830f5 common util dependency
new 6c2fd9e fixing issues when starting the server
new c9dd494 fixing build failure
new f7b14b8 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1415494 13f79535-47bb-0310-9956-ffa450edef68
new 00ee79f allow reloading jcr component registry when airavata api object set
new 3d6eab5 adding new host and app to support jdsl.
new 636b376 Adding jdsl Provider.
new 97f2173 Adding unicore repository to the build.
new 744e84a updating pom
new 3dff27b fixing hosts not saving
new 6bc681f update the workflow launch to use airavata api
new e7006a6 Fixing workflwo to run rather breaking before start running the workflow.
new b6acd3b updating airavata client
new 68dca93 updating client
new 52b40cf updating REST service and client
new f1ce83b fixing experiments not showing in the registry view
new e0ba978 retrieve the port seperately
new 2011141 Removing repository in module pom files
new 5e4b99e Removing repository in module pom files
new de3ac2b addressing AIRAVATA-671. Removed GRAMDeploymnetType in application description and renamed batch application to HPCApplicationDeploymentType.
new a519412 updating schema name spaces to resolvable web locations
new ec9e717 adding xml tags for all schemas
new d6c3ccc updating schema import location
new edcc77a adding new server module to handle embedded tomcat startup.
new 6b85f90 new paramter to airavata-server.properties to handle embedded tomecat.
new b25dd38 using same servlet-api version.
new f95e95c changing the build to have embedded tomcat as default server.
new 41e3968 changing the property name.
new 66de05f changing property name to port.
new 03e5b44 keeping session when authenticating
new 80e88ee updating schema namespace constants
new ccd3777 updating schema constants for wec and wft
new cd9d318 updating rest service
new 03376c6 move registryListner class to common module
new 9d9b2a8 making rest service a jar so that it can be used in the pack.
new 425df3f adding rest service in to the pack.
new e48c836 adding rest service in to embedded tomcat instance.
new 0136b52 create a seperate web app for rest service
new 4b5a18d adding authenticator.xml to the build.
new 47397fa removing unwanted repository which makes online build fail.
new 8764591 change service context and port
new 59c2635 updating distribution
new 2b118a2 updating assembly
new f596eb3 fixing class not found error coming from distribution
new 4d8f409 fixing error when running 10 minutes article.
new 2991c45 copying distribution changes.
new 7e2bf90 set of changes to distro.
new 589d7b6 unifying all three packs.
new 8d908fe applying patch by amila for AIRAVATA-668
new db5260b changing xbaya-gui distribution.
new 3a08400 adding constants
new 0ff2bca git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1417609 13f79535-47bb-0310-9956-ffa450edef68
new 27a47a9 adding more changes in to new pack building.
new e151ef8 Fixing build errof
new bd249c9 changing distributioin artifactId names.
new 00d17fa changing names of distributions.
new 227fd5e fixing paths
new 9078785 fixing paths in xbaya distribution
new 058131c cleaning up poms
new 14d82cc removing unnecessary files from distribution packs
new 2a33d4f adding new sample for airavata-client use-cases.
new 9f10dd0 fixing sample failure
new a7391b4 adding correct samples to airavata client.
new 01096a0 removing unnecessary dependencies from xbaya distribution
new aa18857 more changes to newly added samples.
new 3bc908f removing unnecessary dependencies coming from axis2
new b46d6b7 Initial stab at updating L&N files. Still needs more verification.
new 646848b fixing the gridftp client invalid destination host/port issue
new a5a423d adding more changes to samples.
new 786ee15 update api version to 0.6
new ad19f8b updating REST client and REST service
new 8f7988e refactoring
new 6b57897 updating experiment data retriever
new 7b0d5a2 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1419683 13f79535-47bb-0310-9956-ffa450edef68
new c429ba4 Adding integration test, thanks amila for contribution.
new ba86f42 Fixing paths in pom.xml
new 8ed3dfd temporarily excluding the integration tests
new 482d199 direct access to WorkflowInstance from ExperimentData
new 1330a91 adding code to save input node data in to database.
new dba6529 adding output Node data in to provenance data.
new 10068c9 fixing issues in registry browser view
new 7c0738f adding actions to copy workflow information and experiment information to registry browser view
new fb71401 add missing dependency for REST web app
new b356b82 updating workflow instance data to retrieve workflow inputs and outputs
new 0ff7e27 refactor + add getId()
new 7ab1f4e add get id functions
new 5e23e68 updating workflow instance node type
new 830c032 updating registry browser view
new 4e44893 Fixing issue AIRAVATA-674. Thanks Amila.
new e03ee9f refactor
new fb7dd0b Adding comments to registry-api classes.
new 4041407 review & refactor API objects
new 30b3c80 udpate class import list
new 473ad9c setting interface for WorkflowExecutionData & NodeExecutionData instead of their impls
new 8bd6826 updating rest service to have interfaces
new b0d3e82 Fixing AIRAVATA-673. Also cleaned up integration tests bit. Thanks Amila
new 4b6c2ea changing the location to store database scripts.
new 10b57ca removing NodeExecutionData interface since cannot be deserialized when using REST
new f4008f6 fixing startup issue.
new b212926 fixing build issue
new 4ed5e85 fixing node name not saving when workflow node saving
new 34d19e8 changing the artifactId of airavata-server.
new b049c2c fixing out of memoryerror when deploying on tomcat.
new 58163dd Fixing AIRAVATA-676 and AIRAVATA-675. Also cleaned up some code related to integration tests and rest services. Thanks Amila
new d68b2ca removing abstract keyword
new 8bbc910 Fixing AIRAVATA-678. Fixing integration test failure
new 6aeb311 adding ExperimentAdvanceOptions interface
new 5b028e7 adding ExperimentAdvanceOptions interface etc.
new 82cacfb Fixing AIRAVATA-681. Thanks Amila.
new 78da9bf adding gateway to request
new 0a8083f adding execution advance options impl + updating the API + api impl
new f8910a1 enabling phoebus in Airavata backend
new 9f7bdde Fixing AIRAVATA-682. Thanks Amila.
new 478b586 moving phoebus code to a different maven module
new a685c57 refactoring REST client classes
new 902b445 fixing host descriptor not desplaying properly in XBaya
new 305e23b WorkflowScheduling settings API interface
new be656ec Fixing AIRAVATA-683
new 848603a Fixing AIRAVATA-685. Added necessary functionality workflow manager.
new ffe84ba change ApplicationDeploymentDescription to ApplicationDescription and change method signatures
new 95619c8 fixing database not creating issue when using mysql
new 95e9403 workflow scheduling settings API update + impl
new 74c0001 workflow output data settings bean API
new 04d41d1 workflow output data handle impl
new 2c3f710 adding media type
new d41392a Fixing AIRAVATA-687. Also removed redundant dependency entry from integration-tests pom
new 3c17149 Fixing issue AIRAVATA-688
new 8daeeac updating mysql sql script with latest changes.
new cc31ce5 updating the API to use experimentadvanceoptions & updating the integration tests
new ae4244d update monitor listner & update the integration tests
new a994575 updating stop triggers & adding comments to the monitoring listener interface
new 70b2bfa updating mysql script
new 57d9963 removing duplicate table creation
new 8cf8be9 Fixing AIRAVATA-691
new 7696946 allowing wait functionality until monitoring completes
new 7cd4a4e fixing AIRAVATA-692
new f23a9d5 updating dependencies for jackson + refactor integration test case + stop monitoring one workflow terminated
new 895e95f Fixing AIRAVATA-695
new 3e15392 fixing AIRAVATA-692
new 0b41264 Fixing AIRAVATA-697.
new 0de6270 retrieve registry settings from ariavata-client/server properties files if registry.properties file is not present
new 9da2112 adding the server properties back since it is needed for the maven tests
new e6fcba0 updating airavata-client properties file with registry settings
new 5aab102 fixing AIRAVATA-694, AIRAVATA-692 and AIRAVATA-690
new 1baa22c JIC
new 71cb27d Fixing samples and adding samples to main build
new 519fa1b temporary fix for experimentdata interface not picking up the impl
new 6fdd0fc fixing issue with fail notification sending in gfac-core.
new adeb20d fixing AIRAVATA-702
new a70d008 fixing AIRAVATA-699
new e58a59b fixing AIRAVATA-705
new 8a20722 adding some of missing status checks
new f4ea954 fixing error during startup with tomcat.
new 6cf580b updating xbaya to use new API in airavata api runExperiment + refactoring monitor event class names + adding comments & fixing exceptions thrown in workflowmanager
new eca0c99 changed the log level to debug for usability. AIRAVATA-704
new a93b296 adding wait for experiment termination funtion to the API
new a187a11 update the run workflow sample + update default registry settings to use the rest client
new d9ae7e6 updating the airavata-client sample
new 4dd07fd Cleaning up samples. Removing un-necessary files from client distribution.
new 1484883 refactoring the Monitor API
new c5c91c43 Cleaning pom and removed copying jars to tomcat lib
new 6511388 Fixing few memory leaks
new 27d91dd fixing AIRAVATA-700
new 3c6bf8d cleaning up airavata client
new a4b175e Stopping monitoring if one is already started
new a99e24a refactoring monitor
new 646af5a motnitor listener udpate/refact + execution manager api improvement
new 145bf0d fixing AIRAVATA-643
new 0ed9285 fixing https://issues.apache.org/jira/browse/AIRAVATA-708.
new 22b64c7 fixing https://issues.apache.org/jira/browse/AIRAVATA-708.
new 6083208 removing copying configuation files to lib direcotyr.
new d4ad23b adding security settings - however not supported for 0.6 release
new 4237ed0 Fixing AIRAVATA-709
new ad18e84 reverting input value
new 8d5b89e refactor custom registry intiating function
new bb5246b updating parent pom relative path
new 7d453e8 updating parent pom relative path etc.
new 9deef1c Picking tomcat distribution from local repository if available
new f097e66 Making tests fail if returned lists are empty
new 36841ae fixing AIRAVATA-709
new e2aec82 https://issues.apache.org/jira/browse/AIRAVATA-706
new c4b7ccb fixing EmbeddedInovoker.
new 4d4388e refactoring server settings + adding client settings + ability to update & persist settings
new d8b114f fixing AIRAVATA-713
new 95f6bdd registry service set app as server + fix import + add setting exist function
new 4c78d48 updating log.info to log.debug where necessary https://issues.apache.org/jira/browse/AIRAVATA-712
new 9dfa690 fixing startup.
new 93bf9d6 println to log.debug/info
new 2298b0f fixing AIRAVATA-710
new 5fadd0a fixing https://issues.apache.org/jira/browse/AIRAVATA-711.
new b967e96 removing unwanted reg properties files https://issues.apache.org/jira/browse/AIRAVATA-715
new c3e94e8 removing unwanted reg properties files https://issues.apache.org/jira/browse/AIRAVATA-715
new 749a1d23 Adding jnlp distribution, also removing jnlp related configurations from xbaya-gui
new 303843b removing unwanted reg properties files https://issues.apache.org/jira/browse/AIRAVATA-715
new 8c1ddf1 removing unwanted reg properties files & updating properties files https://issues.apache.org/jira/browse/AIRAVATA-715
new f924978 adding our own unimplemented exception for the api
new d44ebb7 removing airavata-client.properties from xbaya distribution.
new 6906279 adding airavata-client.properties again.
new 39bff77 refactor
new 8905ce3 Fixing AIRAVATA-719. Enabling client to work over HTTPS
new 009379e Adding some logs in to info level which is useful to monitor grid job submission.
new 83b7947 changing Node_data table to have execution index
new a56a7ee adding category_id field to configuration table
new 2243020 fixing AIRAVATA-716
new 644e4ee Removing jnlp build from main build for the moment. Its acting in a weired way. Need to figure out why.
new 7164d46 fixing AIRAVATA-680
new 3576ab5 fixing https://issues.apache.org/jira/browse/AIRAVATA-718.
new 27735e0 fixing https://issues.apache.org/jira/browse/AIRAVATA-718.
new 18d29a1 committing somre more required info level logs in backend.
new 128c811 fixing failure notificaton errors with embedded mode.
new d219571 Fixing failure notification error in embedded mode.
new 0a6ab74 fixing integration test failure.
new 36ec3c4 replace saveHostDescriptor with addHostDescriptor
new 2deced8 Properly fixing jnlp build
new 915e9f8 Add code to create tar.gz distribution as well
new 4a223cf fixing https://issues.apache.org/jira/browse/AIRAVATA-723.
new 4e63f52 fixing an error during embedded gfac execution.
new f579474 fixing embedded mode issue, with notification failure.
new ab5883b Fixing jnlp distribution issues
new 9b7ea7e fixing https://issues.apache.org/jira/browse/AIRAVATA-635.
new e5369e6 saving previously typed registry url for next time
new 586501a overloading context header builder outputdata handler function to have node id as well
new df0ddd5 introducing node id to the output data handler settings
new d67f23f fixing https://issues.apache.org/jira/browse/AIRAVATA-635
new 4e34f75 adding jnlp image
new eac7b50 read port from existing tomcat if present + create airavata server WAR + install artifacts to maven repo (https://issues.apache.org/jira/browse/AIRAVATA-726 + https://issues.apache.org/jira/browse/AIRAVATA-727)
new 7632316 updating overload method to support nodeId as well
new fbcd894 fixing embedded invoker.
new 948d115 https://issues.apache.org/jira/browse/AIRAVATA-727 etc.
new fe696ac merging xbaya jnlp distribution with xbaya distribution
new d138bc6 removing souts.
new d6a877b changed the log level to info for required logs
new 61444ea updated log message for download method
new 1bbbb58 boolean was set as null.. was giving nullpointer error.
new cd10e8b node id was not set from the constructor.
new 7b16ab7 making workflow stop when error occurs.
new bcb7e10 fixing bugs on API function parameter types allowing Boolean & Integer instead of boolean & int + fixing adding new outputdatasettings function
new 3bf5d76 makding embedded mode as the default mode.
new cbf29ab removing old xbaya jnlp dist
new 49eed39 fixing custom registry check missed in AiravataJPARegistry
new ea82909 fixing errorness scenario to make the node red.
new b23bb3c Fixing ssl issues related to jnlp
new 3d23215 adding release artifact distribution for ease of collecting the artifacts for a release
new 496014b fixing AIRAVATA-729
new eebef37 Correcting default authenticators.xml and removing user name password from jdbc url
new a73f31d fixing unwanted properties.
new cab8be7 fixing AIRAVATA-730
new 21d04a7 send Service error as notifications. AIRAVATA-736
new 071a15b fixing https://issues.apache.org/jira/browse/AIRAVATA-734.
new 3215b6e adding project for registry migration
new 8dca9dc fixing https://issues.apache.org/jira/browse/AIRAVATA-736.
new fbffe37 fixing https://issues.apache.org/jira/browse/AIRAVATA-736
new 55c6912 fixing an eror message.
new 9c904a3 updating to have scripts instead of JPA framework
new 111e46e updated to get registry password from user
new 06f16fa adding script to run database migration
new 166c639 create zip/tar.gz from the wars
new ac62918 keeping same airavata-server.properties.
new 2da38ca removing old scripts
new 58b664f updating DB scripts
new 5072d94 updating versions
new 75cd574 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1437499 13f79535-47bb-0310-9956-ffa450edef68
new cd46a3b Added sample for Job monitoring. AIRAVATA-650
new 13dd637 updating registry tool
new f3719c6 updating root pom
new 4b8218a rename registry-migrate to registry-tool
new 3e00a37 enabling to read parameters from command line
new aa30954 adding amila to pmc list
new de38868 Adding back the rat check which looks like was removed. This pedantic profile is needed to check lisence header. Also bumping the apache parent pom to latest release 13.
new 1c73b3a Adding the missing license headers
new a192583 Adding the missing license headers
new 3b47322 Updating the copyright year to 2013
new 40e1ff1 verified all license files
new bad68e7 adding README INSTALL files for all the distributions & updating RELEASE_NOTES
new dbb379d Fix for AIRAVATA-741.
new 9b0d002 updating INSTALL/README/RELEASE_NOTES files
new 34bd489 updating README with distribution descriptions
new 41e78c1 Updating README files
new 5afe1f0 adding release notes to the war dist
new 986862a [maven-release-plugin] prepare release airavata-0.6
new ba7311b [maven-release-plugin] prepare for next development iteration
new 9864280 [maven-release-plugin] rollback the release of airavata-0.6
new 52f399c [maven-release-plugin] prepare release airavata-0.6
new 29fc5c0 [maven-release-plugin] prepare for next development iteration
new d93840a Adding Registry prefix to the URL.
new b2e6c57 committing milinda's patch for https://issues.apache.org/jira/browse/AIRAVATA-749.
new ef8bfea adding a test case to test LocalProvider with new gfac changes.
new 8bf3e45 fixing AIRAVATA-750
new 2f0c0d8 adding more changes to new gfac architecture.
new 42773c0 adding GramProvider in to new gfac structure.
new 3654065 fixing a bad commit.
new f96bbfe fixing test failure.
new a2044e4 removing unnecessary code from test.
new 2aa31d6 fixing a test failure for GramProviderTest.
new 8cc629f adding file staging in to new gfac architecture.
new 121a88e Adding test case to test input file stagin.
new d4efab1 AIRAVATA-202 Adding logic necessary to make ssh connection with the Amazon instances (Required by the EC2Provider). I'm waiting till Lahiru finishes the GFac refactoring. Once it is done will use the refactored classes with the EC2Provider. Then I can start testing the EC2Provider with Airavata.
new f42790f Adding credential-store to repository
new 1535be0 Adding client.xml and other acs meta information
new 0eaccbf fixing myproxy lifetype not picking issue.
new 1ba4587 adding required method to ApplicationSettings.
new 444a9a3 adding new set of handlers.
new 8e19137 more changes to new gfac implementation.
new 034fbea more changes to TestCases.
new 65fa1b5 more changes to gfac-core.
new 557a1aa removing gfac-url dependency.
new 382acc0 integrating new gfac with xbaya.
new 69ae183 integrating new gfac with the build.
new 3f0cc90 adding new dependency to xbaya build.
new 9428eda makesure we dn't do myproxy authentication for all the gridftp transfers.
new 0296dd0 removing GFacService, updating API & removing gfac service
new 8eb7f2a fixing integration test.
new 97a2b09 comitting new gfac-config.xml.
new aa59f01 Removed the job cancel part from finally. We don't want to cancel the jobs on gram errors. There can be communication error with gram server but PBS job need not to be cancel. AIRAVATA-764
new 1b0126c Added support to get file output from outputData folder. AIRAVATA-765
new 3f8ad4d adding workflowcontext header processing.
new 2546342 adding workflow context header support.
new a3c8c03 commiting shabhaz's patch, and thank you very much for your contribution.
new e0023b9 committing shabhaz's patch.
new 0490920 committing shabhaz's patch, thanks for the contribution.
new a12bb2e commenting unnessasary code.
new eadb74e fixing logging issue during build.
new 7f106f1 Applying Danushka's patch after oral review. Could not validate this on my mac, needs testing on windows
new 07ee784 committing danushkas patch on fixing windows xbaya start up - AIRAVATA-773
new 00294df changing gfac-schema to support cloud bursting.
new 9a61117 Addding cloud bursting code to trunk.
new b6dbf06 changing default gfac-config in tests.
new c6489e4 adding cloud bursting jars in to build.
new 12c42d8 Applying the patch from Shahbaz for unicore provider. AIRAVATA-770
new ec8efb1 AIRAVATA-202 Moving the EC2Provider specific code to the new package hierarchy (as the core.gfac package will be removed.)
new 68cddff Moving the existing AmazonSecurityContext class.
new 6e68f3a AIRAVATA-775 Updating the EC2Provider to use the new GFac architecture. TODO: Have to do more work on the EC2Provider as it depends on SSHProvider. Have to wait until Raman commits his changes/fixes to SSHProvider.
new 8866c2d deleteing old code from svn.
new d1ad8a1 fixing build error in tools.
new 17cc3b3 removing obsolete test cases, similar test cases can be found in gfac-core tests.
new 457ebc6 Adding EC2Provider to schedular.
new 67c9499 Fixing build failures due to removal of gfac.core package.
new fa9267c Commenting out the SSHProvider as it should be updated and tested against the new gfac.core architecture.
new 73edb60 Adding the missing jar dependency which made the build failure.
new b872a33 Commenting out a line which uses an api method which is not in the jar.
new 44d6317 Removing a IDE specific file from the svn.
new 19cfaa4 AIRAVATA-202 Refactored and removed the redundant logic from the EC2 Provider.
new c9e0366 AIRAVATA-202 Bundled the logic into methods in such a way that it looks cleaner. I am going to implement the EC2Provider in a such a way that it no longer requires SSHProvider to run jobs. By now all the references to SSHProvider is removed.
new f533664 Minor refactor.
new 1ceec90 AIRAVATA-202 implementing the execute method.
new 5ab0481 AIRAVATA-202 Refactored code. Extracted out constants and reading AMI instance's id dynamically.
new d2c2dc6 AIRAVATA-202 Adding notifications.
new 1a2a55a AIRAVATA-202 Removing the unused classes. The new implementation of EC2Provider does not depend on SSHProvider. Therefore removing the reduandant classes.
new aa47f38 Adding a new element to support EC2ApplicationDeploymentDescription. Earlier, we've been using the Generic ApplicationDeploymentDescription for this, but when it comes to a EC2 Application, most of the fields in the generic scema is reduandant. Therefore, adding this type.
new 740c24d AIRAVATA-781 Adding a test case for EC2 Provider usecase. This test is focusing on a gene sequence alignment using smith-waterman algorithm.
new f69cc18 AIRAVATA-202 Adding proper exception handling and a missing license header.
new 4382927 Minor updates to the test.
new 8c8f667 Updated gfac-config to have handlers.
new 07009cb Fixing NPE.
new d1e9717 AIRAVATA-202 Fixing a nightmaireish bug related to keys which prevented me from submitting jobs to EC2.
new cdb3ccd AIRAVATA-202 Executing the job on EC2 and adding the result to jobContext.
new 18d1d2c AIRAVATA-202 Fixing an issue in the provider.
new 9eea560 Adding a method to generate the shell command.
new 8b63a82 AIRAVATA-782 Adding code for EC2 scheduling algorithm. This is a greedy algorithm which monitors CPU, memory utilization of running instances to schedule the next compute job. Based on the scheduling decision, the next job will run on the instance which is unter-utilized. These, are not yet being used by the Workflow Interpreter. Once, the UI components for EC2 are added to the trunk, we can integrate these to the Workflow Interpreter.
new 318cfe1 removed the unused package
new 2336ccc Added SSH provider type
new 56d0bf0 Added support for SSH provider (AIRAVATA-752) and multiple security context
new c636dc3 Multiple security context (AIRAVATA-780)
new 7d788df Add support to add multiple security context
new 8f7ee84 Added SSH provider to called from airavata service
new 36a307b changed for multiple security context (AIRAVATA-780)
new 7c52fa8 added ssh and unicore host types. AIRAVATA-787
new 3c412b4 added ssh and unicore host types. AIRAVATA-788
new 6f0a377 include ssh api jar.
new 5a4ff09 adding host name to workflow-context-header.
new d52cdf7 use workflowcontext header host and give higher preference for that.
new e7ed8a5 Attempting to fix continuous build failures
new 2007337 removing the empty package.
new 4bcbc31 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1459429 13f79535-47bb-0310-9956-ffa450edef68
new 4ab2a48 adding new method to store job specific data to registry.
new 0f6c231 adding job specific info to registry.
new 2120783 Fixing issue AIRAVATA-742
new b18d20b Removed tostring comparison as it might have platform dependent issues. This is failing in build server
new 1483d80 fixing integration tests.
new 7c0b644 AIRAVATA-775 Adding ec2 menu to XBaya.
new 82acb6d AIRAVATA-775 Adding EC2 menu to XBaya menu.
new cd201ef Refactor to use the constant.
new 7c16822 trying jenkins build issues without credential store
new 1c04caa fixing https://issues.apache.org/jira/browse/AIRAVATA-799.
new 3531702 Uncommenting temporary disabling of credential store
new ec3e7e5 Extracting a method and putting it into a Utils class, so that other Providers will be able to reuse the same logic.
new 498ea2d AIRAVATA-803 Generating the command dynamically.
new c939946 Fix for AIRAVATA-804 . Ran the test cases to verify the build with fix.
new e94a5a8 AIRAVATA-804 Updating setters and getters.
new a1a54f2 setting security context
new af89a15 npe chk
new e0a6fbd null chk for context
new 1a2c265 AIRAVATA-803 Handling the AWS secret key and access key from input form.
new afed7a3 AIRAVATA-804 Fixing a minor issue in setting the AWS keys.
new 04759d9 AIRAVATA-803 Flipping the boolean expression.
new 86de17f AIRAVATA-803 Minor refactoring.
new 1806e4b adding echo.bat file to samples
new e185a5e setting ec2 type for host descriptor, remove application descriptors when deleting service/host descriptors
new 67cf6ff Removing unspported menu items (for 0.7 release) from the EC2Menu.
new 082c769 updating ec2 host descriptor mapping in rest mappings
new 09d5ca4 AIRAVATA-803 Fixing a runtime No class def found exception while running a ec2 workflow through xbaya.
new c9357a9 AIRAVATA-803 Fixing the WorkflowInterpreter to use the EmbededGFacInvoker while running the EC2 workflows.
new 0538d4a AIRAVATA-803 Fixing some issues when extracting the result from the remote shell. TODO: Have a timeout just in case if the user forgets to properly configure the application descriptor. In that case job should return with an error.
new d6c1853 AIRAVATA-803 Extracted a method.
new a8f8a1a AIRAVATA-803 Adding missing dependencies.
new 0db9d10 AIRAVATA-803 Fixing Run time NoClassDefFound exception.
new 2618b0c Fixing an issue in the test case.
new d5de803 Fix for the issue AIRAVATA-809
new c7b1c73 Minor UI fix. Fixing the labels.
new eeda792 updating license files related to cloud bursting jars.
new 38bf2ff updating other license files too
new 69e3add Fix for AIRAVATA-815.
new 93e5dd1 Adding unicore licenses.
new 66ae048 updating versions
new 90f6d99 updating the client sample
new 553e1f2 Fixing an exception in sample applicaiton registration.
new d9c0a11 changing the readme.
new 76d311e removing unwanted empty line.
new f2fa557 updating README file for 0.7 release
new f8f2e46 Adding missing license headers
new 60173c1 removing addressing-1.5.mar.
new 14fcffe [maven-release-plugin] prepare release airavata-0.7
new fdbbed6 [maven-release-plugin] prepare for next development iteration
new 406135b reverting the RC5.
new b49a34a updating release notes
new a827dd9 updating install file.
new e10e1f3 fixing version.
new cfb702a [maven-release-plugin] prepare release airavata-0.7
new 4d5aa38 [maven-release-plugin] prepare for next development iteration
new 057a7bc adding initial version of gfac-archives.
new 702fc0c added setters for HPC and host settings. AIRAVATA-818
new 430eca8 fixed passing of context header and reading node settings to set application configurations. AIRAVATA-824
new a5549e0 fixed context header issue reported by Sanjaya. AIRAVATA-824
new f9c26a6 Adding JSDL schema's to utility so GFac can make use of these generated beans as discussed in - AIRAVATA-656
new 3bad8f7 We need to only set the remote path in the target application. AIRAVATA-826
new 18b9756 Delay in JobSubmissionListener was because statusChanged was not synchronized. AIRAVATA-450
new d36f235 fixing AIRAVATA-83.
new a41cca7 fixing a minor issue with application specific provider feature.
new b79d1d1 fixing https://issues.apache.org/jira/browse/AIRAVATA-831.
new 31b3ce9 fixed AIRAVATA-832. Its not application name its service name not to be set in gfac-config
new 8bba905 organized imports and removed unused variable
new c59bb89 Fixed output handling AIRAVATA-833. There are lot of problems with output data handling. I fixed it best according to current design and will start a mail thread with the problems to get it fixed for 0.8.
new eaf10f8 Fixed AIRAVATA-829.
new aaaeecd Testcase was failing with nullpointer as Airavata API object is null and now the listener responds quickly.
new f9e0eb4 added job id type event for jobid reporting
new df7e2b4 fixed AIRAVATA-832. Its not application name its service name not to be set in gfac-config
new 22fe407 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1471232 13f79535-47bb-0310-9956-ffa450edef68
new f40ec25 undoing a partial committ committed by mistake in eclipse sync
new 47b1b67 renaming init to initProperties to keep the consistancy with Provider interface.
new b051e2e making schedular completely depend on gfac-config.xml.
new cb6e223 changing gfac-config to sync with new features.
new da9987f Fixed AIRAVATA-836. I am not able to find the reason of this code so i just commented context setting code. getting the output staging dir is done in GramOutputHandler
new 8c6d7e5 fixed AIRAVATA-834 for output data staging
new 3d523b5 invoking initProperties.
new 4a50faa organized import
new 5eb015e fixing https://issues.apache.org/jira/browse/AIRAVATA-821.
new 3d93bd7 using the jsdl schemas bundled with gfac-schemas. Incrementally removing external dependencies.
new 78dae3f Removing unused dependency to jsdl jar
new a8f827f Changing the name to UnicoreBESEPR to remove ambiguity with native unicore port configuration
new 6a498bc Changing the name to UnicoreBESEPR to remove ambiguity with native unicore port configuration
new 0130090 Tests pass fine without the wsa4j dependency. The BES security still needs to be refined.
new 66e05b0 Added name-value pair setting to workflow context. This can be used to set dynamic provider or handler level parameters. AIRAVATA-827
new 177218a Fixed AIRAVATA-837. Code was getting called twice.
new a7fdd25 fixing job retry thing.
new 407c3c5 throwing an error if error codes are other than 24.
new df4a6fb in case outputList is coming empty
new 2f65d1d fixing thread synchronizing issue with concurrent node execution of workflow.
new 3958ab1 fixing a handing of workflow run.
new 7848bca ifixing unsubscription issue.
new 6168c9e removing threading with each node due to unstability
new 5fc414b fixing https://issues.apache.org/jira/browse/AIRAVATA-841.
new 006432e testing svn commit
new f024623 updating xbaya version to next release version
new 977151e Generalized the credential store so that it can store other types of credential than certificates. Refactored tests accordingly
new c605f2e minor fix for parallel node execution in workflow engine.
new e3ced6e Storing more fine grained job specific data.
new f62f957 adding node error table
new a29556b fixing test failure
new 18c0765 adding new job specific statuses.
new d2836a6 updating migration scripts
new 63b3423 updating db script
new 0046a0a Fix for AIRAVATA-851
new ef5a426 updating execution error table
new 8cae264 AIRAVATA-850 Decomposing the EC2Provier into seperate util classes. Then, these can be used in other parts of the code as well. Therefore, making them Util classes. I have grouped them in such a way that the classes will have some sort of a logical grouping of functionality.
new 4c78333 Fix for AIRAVATA-850
new 1954733 Fixed credential store issue. Update myproxy and gsi-security code to read store credentials
new 9f31f8e enabling dbcp connection pooling by default.
new 61e8d85 removing wrong openjpa property.
new 57a5d52 adding error functions to the API
new 152dc76 Let the API invocation error message be the original error message of the exception
new 5b8f1e3 Adding logging configurations
new 049fb4e2 making validationQuery configurable.
new 0814099 fixing compilation error.
new 2f66788 committing correct validationQuery.
new dc58960 fixing wrong validationQuery sql.
new 226922a updating REST service with new API changes
new 674e82a updating REST client with new API changes
new 7a12320 Fixing an issue with GSISecurityContext
new 5162917 Added code to initialize credential reader only if security context is present.
new 5413329 Adding credential store to airavata server distribution
new f23aac1 Changed error logs to debug so that it will not print a big stack trace when password credentials are used
new e300f1c fixing error during error saving to regsitry.
new 167d148 updated for trestles.
new 74e462d add code not to create credentials again and again
new b1b7798 fixing a NPE during error saving.
new 8d3af1b Fixing AIRAVATA-856
new 7115013 Fixing an ad-hoc test failure
new 15fb7ca adding testonBorrow property, so that it will run the validationQuery and return the connection.
new d8b2c9c adding testOnBorrow property.
new 7bb1100 adding incompatible version exception and update registry API impl
new bb63b01 allowing users to give jpa connectionproperties in airavata-server.properties file.
new ccb9efc updating registry migration tool
new f8a5690 Fixing some db transaction issues, Fixing an incorrect way of initializing credential management service in gfac invoker
new 095c55c fixing error data not retrieving issue
new 15f586e Correcting table name to have the same case as in the script
new 2151978 fixing getExecutionErrors method
new 638b475 allowing users enable https.
new 62f1360 adding new property enable.https.
new 515c522 https://issues.apache.org/jira/browse/AIRAVATA-859 + refactoring phoebus code + refactoring deprecated code
new e001a6e fixing the url protocol missing issue + fixing a function name typo
new 177f821 updating for the https url to have the complete path for the service
new f7c3442 renaming wrong method names.
new 3d9aed8 adding GFac_Job_Data related changes
new d52268e removing obsolete code.
new 11e8852 taking the port from airavata-server.properties.
new 677bc08 adding host Scheduling method.
new d782a4d adding migration scripts to 0.8 release
new 91c06e5 refactoring exception classes for the API
new 67ae741 refactoring exception classes for the API etc.
new 0c36ea0 refactor
new 43b5f32 Temperory integration test port, until we fix AIRAVATA-860
new 0454bdf adding REST service side changes to AIRAVATA-859
new 607d5c5 fixing getTomcatPort method to get https, http ports accordingly.
new 9324c08 fixing compiliation error.
new 9bf6407 adding REST client changes related to GFac Job data
new 688b810 updating exception throw order
new 6340c72 avoid logging exception
new 6dfb991 updating exception order
new df28424 updating exception order etc.
new 9ad7285 updating catch exception
new b46d30a updating registry migrate tool with Gfac_Job_Data changes
new 2b61c63 adding gfac job authoring impl + updating gridftp conf handler interface
new 0e0cd0c adding gfac job authoring impl + updating gridftp conf handler interface etc.
new f94d4e6 fixing https://issues.apache.org/jira/browse/AIRAVATA-862.
new 4c3cc7b added instructions for JPA accessor. See AIRAVATA-857 for more details.
new cb159f8 redirecting data of old gramdata function in the registry api to the new gfac data table + improvments to the phoebus integration
new 54c4c73 refactoring to have the name application instead of gfac in the API
new 822a67e renaming completedTime to statusUpdateTime
new 18c94b4 saving gram data with the new API
new 82f2b6f renaming completed_time to status_update_time in GFacJobData table
new fbb521b updating JPA impl class
new 5f5ed01 fixed AIRAVATA-864.
new a0582de updating migrate script + gfac enum status obj + refactor
new 05fc677 updating migrate script + gfac enum status obj + refactor etc.
new 507023b supporting null parameter for workflowinstance Id and node id to support for getting application job data
new 6cdd192 adding test class for GFac Job Data
new ae26372 updating id validation locations + updating db migration scripts
new e5b89be adding application job data save for local provider + additional chks in integration tests
new ea8610f ignore chking node present in registry when running application job
new f03622a updating erroneous paths
new f9efdd2 fixing AIRAVATA-865
new a6578a4 updating status more frequetly
new 839f66a commenting out new validation from integration tests for now
new dcf50a4 fixing 406 error for application job data retrieval
new cd1d84f fixing to use the correct registry api function
new 3f93347 converting empty to null
new 26e2f46 application job data persistance for BESProvider + refacting
new a43e26a application job data persistance for SSHProvider
new a2209f1 application job data persistance for EC2Provider
new fe5aa86 fixing AIRAVATA-867
new d41db5d API updates to saving the status history
new 4cf3e33 fixing AIRAVATA-868
new 5de9df0 updating registry migration tool
new f543d55 invoking out handlers if error cmes in provider.
new 6f63edd removing abstract keyword
new bee005d fixing https://issues.apache.org/jira/browse/AIRAVATA-872.
new 2824437 Adding the missing license headers
new 2cc0295 Updating Release notes in preparation for 0.8 release
new a4075d0 Addressing OGF copyright as described in AIRAVATA-874
new d19b990 Addressing AIRAVATA-875. Not sure is annotaion is the right way to preserve a copyright and still can add a ASFV2 license header. This is a temporary solution while we wait for legal guidance.
new 3dd54e2 Adding the missing license header
new c97cc94 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1498140 13f79535-47bb-0310-9956-ffa450edef68
new 49f12fc Bumping downs xmlbeans to 2.5.0 as the 2.6.0 has issues as discussed in AIRAVATA-877
new fcf46e2 Increasing the defualt size of javadoc memory
new f25c616 [maven-release-plugin] prepare release airavata-0.8
new fa81f4a [maven-release-plugin] prepare for next development iteration
new 3268823 Fixing issue AIRAVATA-879
new 9f6c725 rolling back the version for 0.8 release rc4
new 01183f4 Fixing the context issue in webapp and stand a lone server. Also fixing xbaya connection issue
new a3c9ca4 Increasing wait time out period
new a2d350b Further increasing timeout period, as we are experiencing more delay in initializing DB
new 1f23e94 fixing ClassCastException thrown from JPA
new c7e3b35 including the echo.bat sample in the binary
new 0dfc1bb Adding the missing license header
new 8e89ec9 [maven-release-plugin] prepare release airavata-0.8
new 68c5d71 [maven-release-plugin] prepare for next development iteration
new 88f54cd committing Viknes's patch for AIRAVATA-881
new e2f9718 Creating a defualt profile which address AIRAVATA-884
new 28a5e57 reverting trunk as there are no updates since last RC
new 7e07fee [maven-release-plugin] prepare release airavata-0.8
new 9555b86 [maven-release-plugin] prepare for next development iteration
new 17f9569 Removing the lingering jnlp directory from release artificats
new 4d75d9a Addressing AIRAVATA-885. Removed duplicate use of plugins and also organized the needed multiple use of antrun into different profiles. Now to build a jnlp pack, invoke multiple profiles as mvn -P default,jnlp,zip-jnlp clean install
new ec1be5d rolling back for a new RC
new 0a608d0 [maven-release-plugin] prepare release airavata-0.8
new b842f60 [maven-release-plugin] prepare for next development iteration
new 65e5a55 Fixing issue AIRAVATA-882. Commiting initial changes. More changes are on the way.
new bca5297 Fixing AIRAVATA-887. Patching rest service interface. Thanks Shameera for contribution
new 3924583 applying AMQP patches, thanks Danushka for the contribution
new 3cff229 updating product versions + registry version compatibility chk + backend halt/pause/resume of workflow execution in the interpreter
new 5c5b0c9 updating integration test pom to use m2 repo hosted tomcat 7.0.35 version
new b36d219 initial dump for execution rest service
new f223ec1 fixing AIRAVATA-886
new 6af342f updating registry migrate tool
new 003e878 updating registry rest service context
new cc8c04c fixing build failure
new 8e75280 applying patch from Shameera for AIRAVATA-898
new 289ab6f fixing https://issues.apache.org/jira/browse/AIRAVATA-878.
new b086d03 updating parameter window to have the content as url clickable
new 17993b3 adding browser open to context menu
new 7d4bb98 adding browser open to context menu etc.
new 80e10cf adding browser open to context menu etc.
new 0afd312 adding browser open to context menu etc.
new fa9bf42 fixing https://issues.apache.org/jira/browse/AIRAVATA-846.
new 73fe015 https://issues.apache.org/jira/browse/AIRAVATA-866
new a65c993 Moving extreme lab jars to maven central addressing AIRAVATA-406
new 81e675d https://issues.apache.org/jira/browse/AIRAVATA-838
new d147975 https://issues.apache.org/jira/browse/AIRAVATA-820 - fixing foreach issue
new 58aed9d fixing the issue when the node port data value is a comma seperated value
new 0e26e2d Moving XSUL5 to maven central version.
new 0b0b1b6 Removing dependency on xutil
new 74f0608 updating xpp3 dependencies to maven central jars
new 8906f5e updating rest contexts and paths + introducing server management service
new 1eaa69b https://issues.apache.org/jira/browse/AIRAVATA-820
new 8ff1f9a removing the use of wsdl to validate the input data to the workflow
new 2ac97ef Bumping version of xpp and xsul libraries to make them compatible with java6
new 2a287b0 Migrated to use the maven central version of atomixmiser
new db2b45b Migrated to use the maven central version of yfilter
new 2168b01 Migrated to use the maven central version of jython
new c5049c3 removing dependence on legacy extreme lab amazon mapreduce client. This might break EC2 funcationality within XBaya but should not effect Gfac ec2 provider.
new a4b0d00 Disabling Globus-Online transfer api support in XBaya. Will need to work with Globus team to have a transfer-api java client jar in maven central and resurrect this feature in airavata.
new 6611a31 removing dependency on cryptix and puretls jars
new 5729d5d removing ode deployer weps client as it is not actively supported
new a6b9663 Addressing AIRAVATA-406 - all extreme lab dependencies are now in maven central and unsupported features have been deprecated or removed.
new 7ccccff array split for foreach using delimeter and consideration of using quotes
new 64b4c21 adding functions to quote and create deliemetered strings out of arrays
new ff97940 updating delimiter use & data array creation using manual parsing
new 4e11c1c fixing context header loading issue + scheduling context object improvements
new ba84c4f fixing context header config remove function issue
new bfebc73 fixing https://issues.apache.org/jira/browse/AIRAVATA-900.
new 553e311 ForEach integration test
new 859246c removing unwanted import
new 06a1bb2 making the script executable
new 2be86e4 additional test cases for foreach
new e53e9f0 removing the hardocded filename
new ec87913 fixing https://issues.apache.org/jira/browse/AIRAVATA-903.
new d470b75 https://issues.apache.org/jira/browse/AIRAVATA-830
new b469348 adding new methods to string util to return a merging string from an arrya.
new b3f65f2 fix of escape quoting + overloading to support new delimiter
new d9e3d2b Adding initial version of sample gateway. Did some improvements related to providers and credential store
new af4676c updated the BouncyCastle jar to fix Airavata-888
new 2892477 Adding jglobus jars to war distribution
new dcf91ac Adding missing globus jars to distribution
new 7f29adf adding updated sample workflows and updating integration tests to use war disctributions
new 925ec53 fixing AIRAVATA-907
new fa16325 updating the context
new b011428 updating the context
new b6e992a updating service input parameter name
new 235beec samples distribution
new e4696b2 samples distribution etc.
new d9b0918 removing workflow samples from xbaya module
new ed4b6b2 https://issues.apache.org/jira/browse/AIRAVATA-753
new de2948e https://issues.apache.org/jira/browse/AIRAVATA-753 etc.
new 0aa4398 https://issues.apache.org/jira/browse/AIRAVATA-753 comment out failing workflows
new 3e8d4b2 Fixing resource bundle loading issue
new 88f500f updating endpoints
new ce47d29 adding the samples dependency to the xbaya
new 7438c08 adding samples dependency to the allow reordering the build order
new 9786b5c update parent pom
new d41911f setting the type of the sample dist in the dependency artifact
new 3168890 updating jglobus to version 2.0.6-rc3. integration tests pass, but further testing is needed.
new 2af1f44 adding the missing jglobus-all to the local temporary repo
new b393872 adding full jglobus distribution to temporary repo
new fac3929 add registry connection timeout for jpa + updating samples version dependency in poms
new eac7a61 stop asking to clear monitoring data if no longer worklfow running + clear existing monitoring data when running new workflow
new f56c49d chk if the application was saved b4 trying to save again
new faf7a2b fixing in https://issues.apache.org/jira/browse/AIRAVATA-779.
new 2939ef6 fixing issue with airavata client samples
new f8247d8 adding missing jars to client distribution
new 1698a9e giving buffer time for registry service startup + moving the code of adding gateway+user data at db creation time
new eaf4f3f added stampede host description
new 8558b78 fixing https://issues.apache.org/jira/browse/AIRAVATA-910
new ffc1865 fixing AIRAVATA-738
new bf6ddf8 removing hardcoded gateway id
new fd8ff5e checking if the gateway is registered in airavata
new 683d08c checking if the gateway is registered in airavata etc.
new 91737d5 moving jglobus to release version
new bca78bf removing the local temporary repo
new 46697d0 Adding changes relevant to sample gateway.
new a8d8f9a rearranging the gateway id validation test after db validation
new ed1d746 removing the REST execution service bcos it adds transitive dependencies to the final webapp which is close to 100MB
new 322941d revert commit 1520672
new a18f981 fixing the issue when there is no input for a node
new 8acbfe8 additional registry service completed validations
new 994b786 Attempting to fix AIRAVATA-914. And also adding some improvments made to sample gateway
new fd52df9 Disabling a grid job
new a1a04a0 removing final name
new 014dbdd Changed encoding of password string
new 506ad26 updated the trestles gridftp server URL
new c0a71ca adding default user info each time server starts
new c120e27 Commiting changes necessary to prepare 0.9 release
new e5f485c Fixing licensing issues in files
new ffd87ff [maven-release-plugin] prepare release airavata-0.9
new ad38a38 [maven-release-plugin] prepare for next development iteration
new 11c2f7d committing Viknes's patch for AIRAVATA-345
new 666ea76 Applying Viknes's patch for AIRAVATA-880
new 9d7af00 https://issues.apache.org/jira/browse/AIRAVATA-912
new ff2f17c fixing AIRAVATA-920
new 8ca8def committing viknesh's patch for AIRAVATA-870
new aa13472 double click the port to add input/output nodes and connecting them
new d0cac1d adding gsisshhost to system.
new 1e404df adding GSISSHProvider.
new 73eaa2f https://issues.apache.org/jira/browse/AIRAVATA-915
new b72f68c fixing a compilation error.
new 3aa7271 adding new propoerty to AD
new aca119d enabling ssh and gsissh in gfac-core.
new 8a7ee4a minor chanages to host and app descriptors.
new 40705ff adding ssh capablity to gfac-core.
new f16b9f4 associate new changes with gfac-core.
new 96a78f6 updating xbaya to suppose gsissh and ssh
new 26d094d fixing the build.
new 0b7c784 fixing a build error.
new d789097 fixing issues in sshpanel
new e493f74 change mapping from schema changes.
new 7a81a9a updating hostdescriptor pojo
new 09c940b updating the class to support ssh with hpcresource to have hpcapplication
new f341523 removing unused fields of gfac & interpreter url
new 6d2ff21 adding new data to mapping.
new c56f834 moving to the maven central version of the bcgss jar
new 2ad169d Modifyin credential store interface to take secret key dat to encrypt credentials. This is mainly used when ACS is used as a separate component.
new 0d9a4da Modifyin credential store interface to take secret key dat to encrypt credentials. This is mainly used when ACS is used as a separate component. Common code
new 12db975 adding ssh hpc support to gfac-core.
new a97c842 adding ssh hpc support to workflow interpreter.
new a6455b8 adding new gfac dependencies to the build.
new 2b069c3 changing host.xml reading and adding bigred2 and other hosts as default hosts.
new b019438 moved the library
new 72f0b46 removed certificates
new d6e182a fixing gsi ssh integration and refactoring.
new 0365706 GSISSH library to address AIRAVATA-759
new 4db0c87 updated gsissh dependency
new 912af9e updated description.
new 36ff4e5 updated gsissh dependency
new 4984417 issue with hosts not getting added + NPE in host desc dialog + removing unused import + making samples optional in xbaya jar
new 9f1d8a2 updated the bcgss dependency
new 15ed13e fixiing bigred 2 issues.
new aafab70 adding scroll bars to host advance options + jobtype serial as default
new 053e5d7 fixing some moreissues in gsissh.
new 39852ac fixing minor issues with gsissh support.
new 97d1e8c moving gsissh.properties to the build
new 2052db4 gsissh tool to handle standard out and standard error and give higher preference to standard out.
new a7f3953 Fixing AIRAVATA-930
new 63981f0 removed stampede and lonestar from GSISSH support
new 6aa8e5c disabling the execution REST service
new 1a44c40 https://issues.apache.org/jira/browse/AIRAVATA-873
new bcf8ff0 Simplified the regex to support spaces AIRAVATA-933
new b48ff90 organize imports for old ssh library
new 8c2efe2 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-939.
new 5eb253a rearranged the properties and added some descriptions to fix AIRAVATA-744.
new 4b62299 removing phoebus from gfac-core and updating the phoebus-integration library
new fdf4841 removing the stale lib directory and ncsa-lcrypto jar
new 636fa5c updating the use of property system.gateway
new 5aa7c5a Fixed AIRAVATA-947.
new 8b0d60f updated for 0.10 release.
new 400a0e6 updated to fix AIRAVATA-946
new 70074d4 Updated the licenses for GSISSH library dependencies.
new 3760a22 excluded the runtime logging dependency for Jboss logging.
new 7282643 removed the GNU license
new fe94f41 code review and moved cleanup to finally block
new 4cc4615 excluded mysql dependency
new 84f0b86 Updated release notes for 0.10
new 2a8314e Removed the XSEDE certificates.
new 1d0a3ce updating registry version
new b905396 registry version update
new 37a17fe added license to root folder
new b6a394e added the apache license
new 590d7ad added the apache license
new 10d7f63 added the apache license
new 7215d2c update the apache license
new 67c6f70 added the apache license
new d4df837 added the apache license
new 7081387 Removing the run time dependencies from the source LICENSE file addressing AIRAVATA-912
new 176c744 added exclude for integration test log
new e2b3929 changed the log location to target directory to avoid local modification
new 7ec1433 rollback exclude changes for integration test log
new 2e5af75 [maven-release-plugin] prepare release 0.10
new 0595430 [maven-release-plugin] prepare for next development iteration
new b6f6c17 updating registry versions
new 8c3bad1 initial thrift commit
new eddedc8 integrating thrift client with airavata client
new 3a2cad3 adding thrift dependencies to distribution
new 350e6f5 git-svn-id: https://svn.apache.org/repos/asf/airavata/trunk@1541652 13f79535-47bb-0310-9956-ffa450edef68
new 7a2afc4 applying patch from Viknesh - AIRAVATA-925
new e099a89 allowing thrift impl class configurable using the client properties
new 262b1ca fixing sendingResults message.
new f5aa617 fixing standarerror reading during error and notify that back to xbaya.
new 2b1bb18 Adding preliminary files for email notifier in credential store
new 5d88f4f restructuring gfac-core.
new 7c5f11e changing build.
new 8b5e735 more fixes.
new faad789 ading pom for gfac.
new 1703136 fixing build failures
new d05b29d adding gfac-ec2 for the distribution.
new f176123 updating thrift files
new f443a16 removing thrift integration from airavata api
new 2a013ef thrift service implementation module
new 1d29b77 adding GO dialog
new 7b48433 updating gui layout
new 966ac91 updated to fix AIRAVATA-965
new 2120205 updated to fix AIRAVATA-965
new 25132c7 applying Sachith's patch for AIRAVATA-963 with some improvements
new d46ed70 Fixing AIRAVATA-952. Thank you Viknes for the contribution
new 23edda6 fixing AIRAVATA-941
new f014c76 addressing AIRAVATA-953 to build JNLP with release
new cae02da rolled back to use JGlobus 2.0.6 version
new cd878ba updating release notes
new f1d190e rearranging release notes and update README
new b8a1dca updating versions to 0.11
new ff490e3 updating release notes
new 3e3ab13 fixing issue https://issues.apache.org/jira/browse/AIRAVATA-969.
new 1b5eabb adding licence
new 77c3503 removing GO file transfer window
new ac5de4a updating release notes
new 13b297e removing duplicate mvn plugin
new 8ea3ffe [maven-release-plugin] prepare release airavata-0.11
new fb8b3d6 [maven-release-plugin] prepare for next development iteration
new 909e4c1 Attempting to fix AIRAVATA-972
new c14bef5 Another attempt to fix AIRAVATA-972
new faca9e1 Fixing AIRAVATA-974
new defe4dd Cleaning up sample gateway. Does not affect the release
new 0d4bf8d Updated install, readme, license files to reflect latest versions
new cf71bc3 Updating pom versions to 0.11-SNAPSHOT
new 3e47958 [maven-release-plugin] prepare release airavata-0.11
new 1965aa2 [maven-release-plugin] prepare for next development iteration
new cc311af Wrapping up credential store work. Completed notifier. Updated encryption methodologies
new 1656987 https://issues.apache.org/jira/browse/AIRAVATA-970 - patch submitted by Shameera
new fe2f865 fixing https://issues.apache.org/jira/browse/AIRAVATA-982.
new a4d6e4b adding new orchestrator component.
new b7ec31f more orchestrator related changes.
new 715bd18 fixing build error of orchestrator component.
new 32c8c4a fixing build errors.
new 2dadd84 orchestrator data
new 2a62434 adding embedded gfac submitter, fixing https://issues.apache.org/jira/browse/AIRAVATA-984.
new d5c7532 data model
new 6e852db data model
new 1d105fe orchestrator data rescource
new bfb89a0 more orchestrator-core changes with test cases.
new 8abaaee changing the JobRequest object with more parameters to that.
new d0966c6 orchestrator data tables
new 3bc2944 adding new worker to handle hanged jobs.
new 9126194 more design level changes to orchestrator.
new 923bbd7 added registry call to save experiment data
new 7b8af1b added unit test for orchestrator data persistence
new 712d6b8 adding test case for orchestrator-core.
new 4d1735c adding required configuration files to resources.
new 0853dbc adding airavata-client.properties.
new ae9acba fixing build error.
new 5d46292 remove airavata-client.properties.
new f608e82 updated database and function calls
new 1a9827a added unittest for create and get
new 7777ea5 updated database as user is reserved word
new 4ce9325 fixing test cases in orchestrator-core.
new de74d55 making noUserId test work.
new 567295b modifying local provider to support orchestrator.
new fae85a8 fixing tets failures.
new 5c8dc27 adding another test case without sending descriptors along the request.
new f15458a gfac changes to incorporate orchestrator integration.
new 9ac4bbc Orchestrator data changes to pass application and job request
new 290432d changing ochastratorDataResource
new 841478e implementing registry API methods related to orchestrator
new 81c6b8c an initial partial commit of thrift files to address AIRAVATA-990. The data structure will follow
new c6e6e59 updates to method singatures of airavata execution api methods
new a387daa applying AIRAVATA-985 patch
new 32332d0 Including several review comments on the orchestrator code with the FIXME keyword so that they are easily found in Eclipse
new 3198ccd draft data structures
new 327524e changing method starting letter to lowercase
new 58f25fc updating thrift interfaces
new c38812a did refectoring of orchestrator data and executor
new db5f4eb getting rid of optional parameter at service methods
new 6f7f252 added request header model
new 9e5c9a1 removed local thrift
new 2e9a04a update input-output varables
new ea18cec removing unused orchestration thrift file
new f908ec2 applying patch for AIARAVATA-997 from Shameera
new 49b3fdf updating scm to git and testing git commits
new f5b74ed testing git jira integration with a test commit to AIRAVATA-991
new 8233604 [AIRAVATA-998] Testing git
new aa49420 fixed orchestartor-core test failures
new ab892f7 fixing integration test failure and orchestrator test failure
new c750c23 changing the names to camel case
new 361c2ff Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f42c75f partial experiment model for AIRAVATA-994
new 528d3ff updating the AiravataManager API to include retrieving custom config data of gateway
new 0d42fea airavata-server.properties were out of sync. Fixed AIRAVATA-1001
new 05ba6ea Initial draft of airavata data model, please critique on JIRA AIRAVATA-995
new 72f55e9 Updates to Experiment Model to address execution API needs AIRAVATA-994
new 5cf0a0f fixing the namespaces and re-ording struts
new 4cfc32e implementing orchestrator cpi
new 926cd91 adding validation mehtod
new 0f06c3c creating gfac cpi, https://issues.apache.org/jira/browse/AIRAVATA-1010
new 10b41d8 Adding data models for execution - AIRAVATA-994 - Integration test failures can occur
new f2eaba0 more changes to orchestrator cpi creation, https://issues.apache.org/jira/browse/AIRAVATA-1011
new 45df543 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 43524f0 fixing a build error
new 25cc251 initial commit to AIRAVATA-1006
new 68f57ff Rearranging orchestrator code AIRAVATA-1011
new be56384 minor change to thrift interfaces
new f747fff commiting the pom file for registry-cpi
new 1ebc29b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7b68f89 removing local dependency
new 92bcd53 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8f457cb fixing build failure
new a1b1ff9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 176acc2 more code for AIRAVATA-1011
new da4c153 adding the missing imports
new b8152e3 adding thrift generated classes AIRAVATA-994
new 4626b43 adding airavata-api parent pom
new a52692e implementing add and update methods for experiment basic metadata and configuration data - AIRAVATA-1006
new 3070c3d Moving Airavata-API to top level as discussed in - http://markmail.org/thread/73wntnqlvy6konir
new 77d4925 Removing the proof of concept interpreter thrift implementation.
new 57d3cf8 starting on thrift generation scripts, will need more work.
new 03bd52d adding more implementation of registry cpi - AIRAVATA-1006
new 6282fa3 build issue
new fac34c0 edits to thrift script
new 8697b2d Added a script to generate data model as java beans and add the license header and check changes files. Addressing AIRAVATA-991
new 3833de5 returning identifier from add method of registry CPI - AIRAVATA-1006
new f950dea adding the generation of model beans, java client and server to the script - AIRAVATA-991
new 299872a Merge remote-tracking branch 'origin/master'
new a977952 changing adding license header to not preserve backup files
new 85f9528 updating script to use rsync for sycning generated code
new 28ac4b7 adding generated code for API AIRAVATA-991
new fc927c6 Mock airavata api server and client for AIRAVATA-991
new b949a5c Entered new developer entry to parent pom to add myself as a airavata committer
new cf0d15d First draft for a simple mock api - AIRAVATA-1013
new e7ab721 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 37a21a8 updating get function implementation - AIRAVATA-1006
new a0f437c updating get function implementation - AIRAVATA-1006
new 728e04b adding new get methods AIRAVATA-1006
new c6284b3 Adding orchestrator test by consuming registry-cpi
new 0eae773 changing orchestrator-cpi
new 098896a Removing method from orchestrator-cpi AIRAVATA-1011
new c8a6811 fixing input data not saving AIRAVATA-1006
new e4a12c3 completing registry cpi for experiment - AIRAVATA-1006
new 1d0dada fixing erroneous return type - AIRAVATA-1006
new 9b59fb0 fixing erroneous return type - AIRAVATA-1006
new 4635268 AIRAVATA-1011 - writing test cases for orchestrator cpi
new 548a0ba fixing erroneous return type - AIRAVATA-1006
new b1c3603 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new daa536f adding util classes to create experiment thrift models - AIRAVATA-1006
new dea7937 fixing AIRAVATA-1011
new cb78c92 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7456b46 reading thrift version from a property in parent pom
new f6db439 Merge remote-tracking branch 'origin/master'
new dff075c updating directory paths
new b766421 Added monitoring data model. AIRAVATA-1018
new 47a7c15 removing unwanted jobRequest class : issue AIRAVATA-1011
new f78c0e1 fixing build error after removing JobRequest and cleaning the OrchAPI - AIRAVATA-1011
new 45aeb1f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8d163f4 Removing fetchJobs method : AIRAVATA-1011
new 02606da changing orchestrator to use new gfac-cpi
new 029e604 Adding new GFac cpi method AIRAVATA-1011
new 0a1da56 Updated data model for application details and date type to i64 for timestamp.AIRAVATA-1018
new 8ee1188 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6f60464 more changes to new gfac-cpi and orchestrator usage - AIRAVATA-1011
new e59e25e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6555180 adding database start up while server starts - AIRAVATA-1020
new e31e00d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 41da886 Fixing the build error AIRAVATA-1011
new 99538d8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5dd4019 experiment generated model - AIRAVATA-1017
new c4f80ab Fixing test case with orchestrator job - AIRAVATA-1011
new 3c3040d refactoring gfac - AIRAVATA-1011
new 11191ef Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f52dc3b Adding more test cases to fix AIRAVATA-1011
new e7849ef Updating experiment models to address the data management needs discused in AIRAVATA-1017
new 7d9ab4d Refining experiment models to change statuses, creation times - AIRAVATA-1017
new 6269881 Refining experiment models to change statuses, creation times - AIRAVATA-1017
new f94f9f8 Disambiguating use of AiravataExecution. Renaming it to Task as an umbrella term for gfac execution. - AIRAVATA-1017
new 997d5ef data model for AIRAVATA-1017
new 719cbf9 Commiting the generated data-models for modified experiment model. - AIRAVATA-1017
new 7d5d102 data model for AIRAVATA-1017
new ce90264 adding more test cases with gram and gsissh
new cb3a8a5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b0421a2 changing gfac to suite with new airavata experiment mode - AIRAVATA-1011
new 0cd438c build errror
new a0c1cbd new datamodels for AIRAVATA-1017
new 7126528 Adding data models for within workspace and parent to experiment and defualt values for all id's- AIRAVATA-1017
new b46488d Commiting the generated data from modified models - AIRAVATA-1017
new a584c2c adding resources to data models - AIRAVATA-1017
new 0e2e21c adding resources util methods to data models - AIRAVATA-1017
new 4066c47 added resource functions
new e8ac038 merged resource changes and add resource methods for input/output objects. AIRAVATA-1017
new af9cd3b orginized imports. AIRAVATA-1017
new b66eba9 Adding a resource usage field for the Job Details Object - AIRAVATA-1017
new 867cfee adding data model resources - AIRAVATA-1017
new 136cfea adding resources - AIRAVATA-1017
new fe40a1d Regenarating the server implementation against new data models - AIRAVATA-1017
new a6200bb Regenarating the server implementation against new data models
new e264716 Adding basic structure to monitoring component - AIRAVATA-1021
new f0f2906 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b1a6edc removing moved files from the repo - AIRAVATA-1021
new 985151f inital commit to registry cpi - AIRAVATA-1006
new abb05c8 Adding new implementation for monitoring, AMQPbased monitoring : AIRAVATA-1022
new a7baac5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a27cb89 Updated the model to fix setup errors. AIRAVATA-1017
new 1996507 fixed the data models and created experiment test. AIRAVATA-1017
new 4d30958 fixed the data models and created experiment test. AIRAVATA-1017
new 7d603e5 fixed the data models and created experiment test. AIRAVATA-1017
new 6cb5d82 merging experiment resource changes
new ed47131 fixed build issues. AIRAVATA-1024
new 64e2cc4 add and update methods for experiment and experiment config data - AIRAVATA-1006
new 59c77d3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ca3f8c4 Fixed experiment data model and helper classes for unit testing. AIRAVATA-1025
new c28577e get, remove, isexists methods for experiment and experiment config data - AIRAVATA-1006
new afddb4c Fixed experiment data model and helper classes for unit testing. AIRAVATA-1025
new 3628126 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 757fbb6 Registry thrift CPI Service - AIRAVATA-1006
new f8c7451 pushing basic AMQP implementation with a simple test case with amqp monitoring - AIRAVATA-1022
new 0c58b97 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d91a013 fixed the models and utils based on unit testing and added new tests. AIRAVATA-1025
new 3b77227 fixed the models and utils based on unit testing and added new tests. AIRAVATA-1025
new 9b85852 adding add method to data objects - workflow node, task, experiment outputs etc - AIRAVATA-1006
new eeddc5b completing a test case for monitoring amqp - AIRAVATA-1022
new 16d6d17 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8462257 adding more methods to registry cpi impl AIRAVATA-1006
new f2445c2 adding another thread to handle unregistering: AIRAVATA-1022
new 197daf1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a7f35a3 Removing the stale orchestrator service directory
new 5c7fa2d implementing add method for child objects - AIRAVATA-1006
new 34d6c26 Committing basic Qstat implementation: AIRAVATA-1023
new 81faafb Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bd217f8 fixing build error to make qstat work - AIRAVATA-1023
new dd5dbbd adding update method to child elements
new 94aee74 Initial version of the Orchestrator Thrift Service - AIRAVATA-1007
new 2ffc36c implementing get method for child elements - AIRAVATA-1006
new 102ee17 implementing get list method for child elements - AIRAVATA-1006
new 23ed503 A simple test case - AIRAVATA-1007
new ee2824e Merge remote-tracking branch 'origin/master'
new 49bb748 adding remove and isExists cpi implementations - AIRAVATA-1006
new 605ffaa adding util methods to create thrift model objects - AIRAVATA-1006
new b5d57f8 adding error details - AIRAVATA-1006
new 5f6d80a Adding API Methods to create and fetch basic experiment status - AIRAVATA-991
new 204aab1 Merge remote-tracking branch 'origin/master'
new db954ff add unit tests - AIRAVATA-1025
new 7849212 integrating orchestrator-core wth orchestrator service - AIRAVATA-1028
new 2a52bd7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ec63576 Changing gfac-cpi to deal with taskID
new e202140 fixing some issues with registry jpa models - AIRAVATA-1025
new cb4b7a3 fixing build error https://issues.apache.org/jira/browse/AIRAVATA-1029
new adeba77 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 82be00b fixing build error - AIRVATA-1029
new 548c2eb registry startup while airavata server starts
new 5d7cf00 fixed build error. AIRVATA-1029
new bc954ec Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3a453bb added ConfigurationData support. AIRAVATA-1032
new 67d283f set ConfigurationData to GFac context. AIRAVATA-1032
new 7f4e406 adding default constructor to registry impl and fix some build issues
new e0e1c97 airavata server implementation for registry functions - AIRAVATA-1013
new 6ed27b9 adding airavata server handler implementation - AIRAVATA-1013
new 7322247 updated to use data models. AIRAVATA-1032
new 57ccaa5 Removing the model from stubs jar. Now the API stubs will only have API methods and will need a dependency on the model. - AIRAVATA-991
new 04a8b5e adding client to check airavata server functions
new 8aa06df Removing the Gfac reference to api-stubs to avoid any future ambiguity
new 650b457 Merge remote-tracking branch 'origin/master'
new 312a8ef changing the factory class
new 0d5baf1 Only selectively syncing the API classes - AIRAVATA-991
new 505971a Merge remote-tracking branch 'origin/master'
new 2d2be14 added method for backward compatibility. AIRAVATA-1032
new fa2601a Implementing initial version of orchestrator-service
new c9b9575 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a33b8c6 fixing testcases - AIRAVATA-1028
new 0aecca7 client sample to get experiments
new bead7c8 Adding orchestrator test methods - AIRAVATA-1028
new cd8d891 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2eabd51 test class to orchestrator
new 48b0c5e More work to integrate orchetrator-core with orchestrator-service- AIRAVATA-1028
new d29a148 fixing test case
new ab54c7d Adding NPE fixes - AIRAVATA-1028
new 93545e1 fixing build error
new 66c88f6 checking NPEs
new 6228daa fixing build error
new 99297f9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bf11984 fixing issues from registry side for AIRAVATA-1028
new 8041908 More fixes with integration - AIRAVATA-1028
new a021324 fixing issue during integration test - AIRAVATA-1028
new a4c0adc more changes for integration - AIRAVATA-1028
new 955dfe7 Initial draft of Host description model. This has to be improvised referring to the OGF Glue2 Schema - AIRAVATA-1015
new 1262568 Merge remote-tracking branch 'origin/master'
new 4bd8af6 adding throw statements to registry cpi impl
new 9f338e1 adding new registry exception
new cce56e3 Removed airavata-interpreter-service-client from Airvata client module
new 049ca17 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5549c1d Updated the models for TransferState and JobState enums.AIRAVATA-1038
new cb2a389 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f75fa7e adding generated data models - AIRAVATA-1038
new 0a470ce adding unit test to registry resources and fixing some issues in the cpi - AIRAVATA-1006
new 3f8457a committing more changes with orchestrator-registry integration - AIRAVATA-1028
new 22cd1a0 fixing merge
new 8252ea5 fixing a issue
new ec41727 fixing a todo after output data saving is fixed by chathuri - AIRAVATA-1028
new 47afa39 changing the monitoring to work with dynamic host configuration - AIRAVATA-1028
new 8a615ec Save JobDetails and use task details. AIRAVATA-1043, AIRAVATA-1042
new 5fb684b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 119f754 Fixing bouncy castle version issue
new 2736d75 Fixed AIRAVATA-1043.
new 1dc04ce Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 46b17de adding client sample to orchestrator client
new c897d30 adding sample to create and launch experiment - AIRAVATA-1039
new adc3cc5 Providing monitoring to the sample CreateLaunchExperiment.java - AIRAVATA-1028
new 44fb8f9 checking status
new 5e851e6 Removing duplicated configuration - AIRAVATA-1028
new 3cf487e rename AiravataServer as AiravataAPIServer https://issues.apache.org/jira/browse/AIRAVATA-1046
new d6b6693 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bad1273 https://issues.apache.org/jira/browse/AIRAVATA-1048
new b7b8018 Changing the sample to monitor the status- AIRAVATA-1039
new 5b62ef6 AIRAVATA-1049
new 0ec292f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 592f102 Added error detail registration. AIRAVATA-1043
new e0eb89a Fixing issue with multiple calls in airavata-server
new 4d6dbbe Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new cead776 https://issues.apache.org/jira/browse/AIRAVATA-1047
new 893156a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new edd26be https://issues.apache.org/jira/browse/AIRAVATA-1046
new 7cf63c7 https://issues.apache.org/jira/browse/AIRAVATA-1046
new 1860a8c adding the properties file temporarily so that the IDE's can run the server https://issues.apache.org/jira/browse/AIRAVATA-1046
new 9081328 https://issues.apache.org/jira/browse/AIRAVATA-1051
new d4ed9c5 change job details to CLOB instead of varchar - AIRAVATA-1049
new 79cb0ef AIRAVATA-1049
new e40016d AIRAVATA-1052
new d0617ee Created method to generate Ultrascan descriptors. AIRAVATA-1059
new 5a80778 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 76c31db https://issues.apache.org/jira/browse/AIRAVATA-1060
new c6d450e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1a94608 https://issues.apache.org/jira/browse/AIRAVATA-1060
new ad03762 https://issues.apache.org/jira/browse/AIRAVATA-1060
new 8fa0405 https://issues.apache.org/jira/browse/AIRAVATA-1060
new e581557 https://issues.apache.org/jira/browse/AIRAVATA-1060
new bada8e4 log4j was added to dist through transitive dependencies earlier, however its not happening since we removed unwanted jars. so manually added the log4j jar to assembly https://issues.apache.org/jira/browse/AIRAVATA-1060
new f452dab https://issues.apache.org/jira/browse/AIRAVATA-1060
new 50af1b0 Some minor FIXMEs to the Airavata API server code.
new 2d07714 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0233dcf Removing test file
new d707fc2 Fixed the script. AIRAVATA-1062
new 8718d94 removing unnecessary sql files
new 5e3f0cf updating document creator method signatures
new 28f0b42 fixing NPE on AIRAVATA-1052
new 880003b update local providers - AIRAVATA-1061
new 59cc938 Fixed the table name. AIRAVATA-1062
new 59dcfaa server distribution need apache-commons-io
new 65d26eb refactor to read the port from config file
new f986e09 refactor to read the port from config file
new b358106 Implementing slurm support - AIRAVATA-1057
new 532f269 merging changes
new 0315de4 More changes to slurm implementation - AIRAVATA-1057
new c57378b More changes
new ccf48b2 updating integration tests - AIRAVATA-1054, AIRAVATA-1055
new 4ecf18e Adding SLURMTEMPLATE to the build- AIRAVATA-1057
new 4523bd9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9c4f64a Adding a test for stampede too - AIRAVATA-1057
new 219063e adding missing resource files AIRAVATA-1055
new 0a89a10 minor changes to the test case and fix test failures - AIRAVATA-1057
new dda627b fixing
new 83dd7b0 fixnig a merge
new 3dd2bf0 fixing timestamp issue while saving data - AIRAVATA-1062
new 21040ae Added samples for Ultrascan MPI Jobs. AIRAVATA-1059
new ae4adec Fixing more issues with slurm monitoring - AIRAVATA-1057
new 8b8451f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0f7a194 Modifying more monitoring - AIRAVATA-1057
new 2ea8b5c Merged clients for MPI samples. AIRAVATA-1059
new 99dd1ba Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new de5aa33 FIXING slurm monitoring issues - AIRAVATA-1057
new c45875e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d8d2945 removing unwanted messages - AIRAVATA-1057
new 4932605 fixing AIRAVATA-1062
new 9e71880 https://issues.apache.org/jira/browse/AIRAVATA-1046
new 1f298ea Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1d7671e adding integration tests to stampede - AIRAVATA-1055
new 856da92 Removing unwanted dependencies from job-monitor component
new 9295006 Added test for Ultrascan for stampede. AIRAVATA-1059
new afcd6e3 Updated for localhost testing. AIRAVATA-1059
new e54c7d0 support overriding server settings via commandline args https://issues.apache.org/jira/browse/AIRAVATA-1047
new 708f6a4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7b61c48 https://issues.apache.org/jira/browse/AIRAVATA-1047
new 53acbbd https://issues.apache.org/jira/browse/AIRAVATA-1047
new 5b3c75f https://issues.apache.org/jira/browse/AIRAVATA-1046
new 0b6e1e5 https://issues.apache.org/jira/browse/AIRAVATA-1046
new 74a5d2a https://issues.apache.org/jira/browse/AIRAVATA-1047
new de76d89 https://issues.apache.org/jira/browse/AIRAVATA-1047
new 8c0287e Only selectively syncing the API classes - AIRAVATA-991 Create and Get Projects and Get Expeirments added to API - AIRAVATA-1017
new 659600d Only selectively syncing the API classes - AIRAVATA-991 Create and Get Projects and Get Expeirments added to API - AIRAVATA-1017
new 5920f22 Only selectively syncing the API classes - AIRAVATA-991 Create and Get Projects and Get Expeirments added to API - AIRAVATA-1017
new 78365f4 adding implementation to get experiment list - AIRAVATA-991
new 5331b94 adding rabitmq library
new 85cde27 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4ee0852 adding rabitmq library
new 24babee fixing issues with job monitor - AIRAVATA-1027
new 7124930 https://issues.apache.org/jira/browse/AIRAVATA-1046
new 1a86ed9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 68a5589 fixing build error
new 1263b2b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 35da602 Adding more fixes to Monitoring - AIRAVATA-1022
new eb3ae31 fixing experiment name not set issue
new 67195e5 Fixing server hanging issue - https://issues.apache.org/jira/browse/AIRAVATA-1072
new 2a813b8 support forced shutdown
new e5901e8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 29e1221 support forced shutdown etc.
new 2e8dbe1 Adding a more logs to investigae - AIRAVATA-1072
new 58872ce fixing monitoring issue - AIRAVATA-1023
new 583ed30 Adding more logs to monitor
new 4d254f1 more logs for monitoing - AIRAVATA-1023
new f7dba4e more logs to monitoring - AIRAVATA-1023
new 44ec4d3 adding project data to cpi - AIRAVATA-991, AIRAVATA-1006
new 4c50cab more improvements to monitoring - AIRAVATA-1023
new 4c6f73d Fixed document creator. AIRAVATA-1074
new fc64bd0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 12dd3c6 fixing node status empty issue when getting experiments
new 703a92b NPE in saving error details
new bbbc35d Adding glue2 schema and add more changes - AIRAVATA-1023
new c00025f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e181bfb updating file clearing on start and stop
new f9b95c9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new fc8f968 Fixing issues regarding failured submission - AIRAVATA-1023
new 86bf411 fixing error details not saving issue
new 258b5a7 temperory fix for AIRAVATA-1073
new 3a38bdf More changes to qstat monitor - AIRAVATA-1023
new 6d1797d Adding more graceful shutdown operations to airavata - AIRAVATA-1072
new b32cb52 Adding more changes to do proper threading - AIRAVATA-1072
new 4a0571d changing logging level to info by default
new 9b4dedf updating server force stop to have kill commands at unix level
new 13c67c4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 744b546 Fixing directory creationg issue in gfac
new bb988d3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 922686b changing transfer description to CLOB
new 86d2b62 dont remove process files
new cb6b7a8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 199004d making threadpool server as default value
new 56e65c1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 95fb3eb fixing app descriptor issue with workign directory is wrong
new ef3e2e4 fixing possible issue when retrieving job details
new 576729b updated the descriptors and created client. AIRAVATA-1059
new 77758cb Generated C++ Client SDK - AIRAVATA-1075
new 457e20d fixing updating and getting job details
new 47be5d4 updated documentcreater method. AIRAVATA-1059
new 8c6f9b5 updated documentcreator method. AIRAVATA-1059
new c4bac75 PHP Client SDK - AIRAVATA-1064
new e8a6d41 Merge remote-tracking branch 'origin/master'
new c0f2084 fixing issue with output data handling
new 0c08b94 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 53977e3 updated the input/output directory name for ultrascan. Fixed the Launch experiment.
new 57c8aae supporting customized output path
new cbf5b68 Fixing output handling in gfac
new dde86a5 Fixing monitoring with new state - CG as completed - AIRAVATA-1023
new c9f9254 fixing adding advance input data handling
new 705dc59 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 89ac4f9 updated the direcotry location. AIRAVATA-1076
new 0b6de06 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 05de4b4 saving default error details enums
new 367a0ff Handling Slurm output error scenario
new f558dee Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7a8838f adding error type for exceptions
new 9643198 Fixed output data reading. AIRAVATA-1077
new 0a46c0c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1f7a8d9 https://issues.apache.org/jira/browse/AIRAVATA-1078
new eeb00a3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bf37ea8 Adding more precise logs to gsissh operations, so invokers doesn't always have tlog
new 1441a83 Improvements to the PHP Client - AIRAVATA-1064
new 5b6e610 Merge remote-tracking branch 'origin/master'
new 1c06fe0 Type of stdout and error coming as string so added extra check. AIRAVATA-1077
new dfb51fc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b424dfe Stdout/err was not handled. AIRAVATA-1077
new 5d12010 fixing listDirectory error
new 1638e26 fixing build error
new a096056 fixing output downloading
new a6451c9 fixing scp output
new cec965b fixing scpout
new b568db9 fixing scpout
new 1c4433a fixing scpout
new 615820a fixing advanced output hadnling
new 60c77db fixing advanced output hadnling
new 30b04ca fixing advanced output hadnling
new b1b5178 Fixed reading the input from remote.
new 7437e11 removing space of the experiment name while creating exp Id
new 25e5e91 Added output folder properties.
new 12c6054 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 49e74f5 fixing session timeout related to ssh operations
new 96c1155 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 783a26a Updating php sample with application values - AIRAVATA-1064
new 23df890 Initial commit
new c889112 cloning php sample from airavat repo
new 5afba8e fixing factory class issue
new 5d9bb84 Adding outputs to experiment config
new 230c700 Test commit.
new d3ad23a adding \n for command line testing
new 444f2df Fixing input moving error - https://issues.apache.org/jira/browse/AIRAVATA-1080
new 5467488 Fix experiment state printing.
new 713359c Merge branch 'master' of https://github.com/SciGaP/Airavata-PHP-Client-Samples
new 005c88b Add second file for tasks not related to experiment creation.
new ab1ab84 Updating Copyright Year to 2014
new c2d006e moving the job-manager to tools
new 0edfa86 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e58a442 fixing build with the move of job-monitor
new 31f3883 stated using Jcraft for SSHprovider communication. AIRAVATA-1082
new 0599edf Adding myself to committer's list
new 6b90e64 Fixing Localprovider support
new a052f5b Supporting user based monitoring with pull - AIRAVATA-1023
new 098992d Implementing user based pulling for slurm - AIRAVATA-1023
new 8d9a5ca Adding amqp message parsing - AIRAVATA-1022
new f60565b https://issues.apache.org/jira/browse/AIRAVATA-1088 - fixing
new cb826d3 fixing https://issues.apache.org/jira/browse/AIRAVATA-1089
new 6435ad3 more improvements to amqp monitor - AIRAVATA-1022
new 9825ab2 More improvements to amqp monitor
new dc01f7c fixing test cases
new c1f3429 removing wrong files
new 04c502b Added tests for SSHprovider and fixed bugs. AIRAVATA-1082
new 98519a7 more improvements to amqp monitor - AIRAVATA-1022
new 7e845c1 merged the changes
new 007a111 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 52e0fd3 applying patch from Sachith to AIRAVATA-1055
new 8f70e58 Test got messed up with marge. Fixed to use right test.
new 85f20a6 fixing php factory class issue
new 460da0e fixng AIRAVATA-942, no scheduling activity is there in gfac at this point
new 192cd28 removing duplicate tests, related to Commit: 8f70e58aed3bf5061688b8328e20521a442198f3, AIRAVATA-1082
new d68afe9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 80cbc3e Fixing a NPE during error scenario and fixing the code to show proper error message
new b47a807 removing duplicated airavata-server.properties, AIRAVATA-1004
new 346a3f5 Fixing AIRAVATA-762, adding support to SGE
new b57c333 adding xslt to the build system, AIRAVATA-762
new c7a9c8e changing the build to get new xslt for SGE,AIRAVATA-762
new 74556fe https://issues.apache.org/jira/browse/AIRAVATA-1055
new b20d2f2 https://issues.apache.org/jira/browse/AIRAVATA-1055
new 42a4d2b https://issues.apache.org/jira/browse/AIRAVATA-1055
new 9c55545 Fixing the build to handle grid test cases
new 1301e2a adding api folder to README
new a2dcc36 https://issues.apache.org/jira/browse/AIRAVATA-1121 + disabling some test cases that fail due to unsupported workflow for this version
new 9ab16b9 fixing the merge
new f2a7fc3 new files
new e083a8f fixing the build
new 56eea3b updating parent pom artifactid
new ea57ef5 https://issues.apache.org/jira/browse/AIRAVATA-1121
new de61d51 load external settings and supporting system properties AIRAVATA-1121
new e161738 fixing build for gridTests profile
new fa32f4d fixing test cases
new f01ea07 Fixing gsissh tool test cases
new 8b27819 fixing gfac-tests
new a8d53cd fixing gfac-core tests
new 848874c Add .gitignore for PHPStorm project files.
new a5def09 fixing test cases and changing the property names
new 5940988 AIRAVATA-1121
new 0e2c10f AIRAVATA-1124
new 9c47eec AIRAVATA-1124
new e488180 testing git push
new 43dfd1d renaming some of the airavata-server.peroperties
new 96aad52 test
new bb0f710 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b7122a9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b1bdbd9 Adding new tests to monitor-tool
new 3330060 fixng Qstat test to work with maven
new 2c186f6 Update AiravataClientFactory. Remove buffered transport to get experiment- fetching methods to work.
new bc390e7 testing git password
new 00ce4a8 AIRAVATA-1140
new 3858717 updating distribution directory structure
new d3fb569 updating distribution directory structure etc.
new 46205e6 AIRAVATA-1143
new 4903770 AIRAVATA-1144
new 03e4030 AIRAVATA-1143
new dd7617f updating client dist name
new eeb2c0d adding php and cpp sdks to the build and release AIRAVATA-1143 AIRAVATA-1144
new 603897c Fixing the test cases to stop threads properly
new 9edda85 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0c0b6d4 refactor to load monitor listeners to load from the server settings
new 56574dd Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 20306cd https://issues.apache.org/jira/browse/AIRAVATA-1145
new d4e3985 https://issues.apache.org/jira/browse/AIRAVATA-1145
new 3d229e2 updating the samples path
new 18ee7cd fixing AIRAVATA-1145
new 832a715 throw exception from AiravataClientFactory when unable to create a client + refactor integration tests
new 6fe3d3a cosmetics to integration tests
new 3013e74 adding 'CENCELING' status
new 6791031 checking in data model changes to AIRAVATA-433
new aed31d3 AIRAVATA-433 + fix client sample issue
new 5381d59 moving ssh implementation out of gfac-core
new f2b5df4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 67b44a1 introducing workflow node status updater + refactor
new 49eea6f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 71de72f fixing qstat monitor exception handling
new dd3b3f1 fixing the double node entry issue and some refactoring
new b4e4164 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ede5898 https://issues.apache.org/jira/browse/AIRAVATA-1142
new ab89c88 AIRAVATA-1141
new d2814f6 AIRAVATA-1139
new 0364b65 reverting commented SSHSecurityContext code
new b023084 merging monitoring with gfac-core, later this will be separated
new 34a8147 fixing monitoring issue with async submission
new 9c75294 Create separate files for 3 problem functions: getAllExperimentsInProject, getAllUserExperiments, getAllUserProjects. Increase TSocket timeout to 5 seconds.
new b6c7c41 fixing most of the error during job execution
new a6245bd fixing test cases with gfac-ssh implementation
new 740bf8c adding new integration tests to retrieve project and experiment related data
new 3361df3 separating gsissh package
new 2f14186 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e524d7e removing gfac-monitor
new 8c6a9a5 fixing the build error
new 55ff3ae updated the test to use admin user until we have api function to create users
new 053ce56 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 13b505a creating gfac-bes and gfac-gram out from gfac-core
new 7be9dae Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ec1d2b8 addign new jars to the build
new 989a1fd seperate out gfac-local from gfac-core
new cb0db78 Seperate out gfac-local from gfac-core
new 216e2d6 seperate gfac-local from gfac-core
new 761b81e seperate gfac-local from gfac-core
new 1852d79 seperate gfac-local from gfac-core
new 9a78730 seperate gfac-hadoop from gfac-core
new 3a4dfd0 adding sachith to the developers
new 61a312a fixing AIRAVATA-1161
new d0ff925 test
new a2307f9 Merge branch 'temp'
new bca756a adding unkonwn status to most of the possible places
new c1f69ae fixing the build break
new 64c6657 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e218fc0 fixing gsi ssh job execution error
new e8453e2 Fix missing Project class bug. Add getExperimentStatus and terminateExperiment.
new 418480c test client for create project.
new 596a1e9 Fix AIRAVATA-1170.
new 322fc06 Hard-code values in createProject. Add var_dump to getAll*.
new 8f8212e Simple create experiment.
new d9d0814 Merge branch 'master' of github.com:SciGaP/Airavata-PHP-Client-Samples
new 42b29f3 Add scripts for clone, getexperiment, get outputs, terminate, update.
new d4f7930 Launch a hard-coded experiment.
new 0eabb93 Fix updating of Experiment and Task status. AIRAVATA-1164
new 553caa0 Separating gfac-monitoring implementation
new b203064 fixing issues with new changes
new 0da5982 fixnig minor issue related to status updators
new 9bb8c2b changing package names of gfac implementations
new 49b6987 moving gfac-bes classes to new package.
new 6209ee0 fixing more packaing issue
new fc70a07 Hard-code experiment name, user, project.
new e38a901 use ExperimentNotFoundException
new 39370c5 moving common monitoring classes to gfac-core
new 14c1841 Fixing the build and more issues related to gfac
new 9be225a Fixed output population. AIRAVATA-1185
new ee79b70 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c11651b Removed extra imports. AIRAVATA-1185
new 70846f3 Changed the thrift model. AIRAVATA-1199
new 04269ff Changed the Registry DataType to RegistryModelType. AIRAVATA-1199
new a9e022b fixing errors came during gridTest run
new 79750b7 fixing AIRAVATA-1182
new 7ec932b fixing https://issues.apache.org/jira/browse/AIRAVATA-1200
new 86f4641 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 96fed6e generate code and update references - AIRAVATA-1199
new 3132bf0 adding tests for validator functionality in orchestrator - AIRAVATA-1200
new b7fea71 updated for AIRAVATA-1199.
new bee2dac Updated to handle project changes. AIRAVATA-1182
new c1c8237 Filled additional experiment details.
new 93db370 creatExperiment works. Other files updated the hard-coded expId. To be fixed.
new 956e8d5 adding another test validator
new f11b02d fixing integration test failures
new 4b4bd90 generating php and c++ source and fixing bug in generate-code script
new fd93ec3 datatype changes
new 4e76188 added datatype
new 501b43d make experimentID as command link arguments.
new 6c1fa83 get outputs
new 2fce90e Updated Compute Resource for discussion - AIRAVATA-1015
new 6dbe34e Refer GLUE2 schema for terms - http://www.ogf.org/documents/GFD.147.pdf - AIRAVATA-1015
new cd8250d adding job submission protocol structs
new 483a0f5 https://issues.apache.org/jira/browse/AIRAVATA-1203
new 011ec5e https://issues.apache.org/jira/browse/AIRAVATA-1203
new c18a52f fixing validatorTest
new 6328bea Adding validation funcation to thrift service - AIRAVATA-1200
new 3ba8cfa Exposing the orchestration validation functions from Airavata API and also validating before launch - AIRAVATA-1200
new 5e6040c fixing clone experiment issue - AIRAVATA-1207
new b2e3fd9 fixing unwanted task creation
new a5e6967 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 131d967 https://issues.apache.org/jira/browse/AIRAVATA-1203
new 7147780 Removing username from createProject and validate whether project has required fields in the API implementation - AIRAVATA-1221
new f05dd0f adding a result object for validation
new d76c9d5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 22d0a6f change cloneExperiment method to have previousExpID and updated experiment - AIRAVATA-1207, fix issues in appcatalog thrift files
new 7d0ce7d adding generated code for app catalog
new 88e16cf fixing AIRAVATA-1205
new abc9134 Edit scripts to take command-line arguments instead of hard-coding values.
new bf702a5 updating clone experiment method
new 8790244 remove unwated thrift file
new c1a1bad https://issues.apache.org/jira/browse/AIRAVATA-1203
new da94101 fixing some possible places where state can be set as empty
new 84294a7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 939f7be fixing AIRAVATA-1227
new 12e2869 passing experimentid argument
new aa31eff library changes
new d48d67e library changes
new 3d76388 fixing AIRAVATA-1219 and AIRAVATA-1220
new a169a28 Update createProject for API changes. CLI arguments for getAllUserProjects.
new 37dea65 Update cloneExperiment for API changes. CLI argument for getAllUserExperiments.
new e9c0b4d Adding validationResult object.
new 63764cb Add CLI arguments for user and experiment name.
new 23628a6 adding generated code for experiment validation
new a0c369a adding validation classes
new 6edddf2 adding gssissh enum
new 38f12a0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f9f173c adding validation fail exception
new 0317c4a adding id to all the job submission protocols and data movement protocols - AIRAVATA-1203
new 5cded24 (Airavata-1239) Adding a commandline sample for updating an existing project.
new 692bc6b Removing unnecessary require_once
new 2608266 (Airavata-1188) Tweaking this a little to just return the project ID
new b9eb7a9 adding db tables for app catalog - computationResource
new 5632de3 fixing validateExperiment
new 6f7d824 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3188867 Add project ID as required command line parameters.
new 63ff50c adding model classes for app catalog - AIRAVATA-1236
new 6cb07ad (Airvata-1197) Small change to make more command-line friendly
new 400fa45 Cleaning this up a little bit. Removing dual calls to GetAPIversion() and replacing HTML breaks with shell return lines.
new 1fe6d45 Making this a little friendlier by outputing the Experiment's ID as well as its name.
new a6773c8 Moving the Experiment ID to the end so that it is easy to paste it into another script.
new 3049a0b adding the changes to the app catalog models and functions
new 23c1184 generating code
new 8973b88 Relatively comprehensive API tester added for stress testing; Updated variable names in getAllUserProjects.php for clarity.
new 2b87aa2 updated the timeout
new 100562d merged the changes
new a4093164 Removing obsolete PHP clients.
new 054093f fixing AIRAVATA-1242
new 44ebc62 Merge branch 'master' of https://github.com/SciGaP/Airavata-PHP-Client-Samples
new ddf262d fixing AIRAVATA-1244
new 24519d3 fixing AIRAVATA-1243
new dab6152 update airavata log level to INFO instead of DEBUG
new 6bb880a fixing AIRAVATA-1230
new 2710f6e adding new validator
new af312c3 adding gridftp model
new e25c541 adding the app catalog handler
new 029cfac Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new fef7c4a generated code for gridftp model
new 1bb816a adding new functions to the handler
new 1793672 update outputs for local provider. AIRAVATA-1185
new ee50805 fixing AIRAVATA-1184
new 61dd0fc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4f2ca03 fixing erronieus check
new c272669 fixing issue airavata-1185
new 4792e81 Code cleanup. AIRAVATA-1185
new 1fd52a1 updated lib
new dd0ba0d Adding a little README for the client examples to explain the sequence.
new 68dff5d Merge branch 'master' of https://github.com/SciGaP/Airavata-PHP-Client-Samples
new 76d9108 Fixing airavata-1229
new b04cbe9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 009ee0d Changing gfac framework to coop with new gfac service
new 2ce716c adding gfac thrift service module
new 452419f fixing monitoring error
new 0193ff9 Added updateProject, updateExperiment calls in tester.
new c00a71a Added clone experiment in tester.
new 7592a61 (Airavata-1250) Adding a configuration php file and updating php clients to use it.
new 222a14d (Airavata-1250) Adding a configuration php file and updating php clients to use it.
new 427056b Merge branch 'master' of https://github.com/SciGaP/Airavata-PHP-Client-Samples
new 6f1ed7f fixing AIRAVATA-1249
new 59b9906 simple comment.
new 94c1fb2 Fixing hpc monitoring issue
new b9b8c25 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a365830 fixing AIRAVATA-1257, AIRAVATA-1258
new 0f914f2 changed updateProject and updateExperiment syntax.
new 43a3761 change updateProject to have project ID
new fd9e7f4 changes to orchestrator thrift service
new 6208eee Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new fb0e725 updated for new functions
new 169818f project function changed
new 050fd1d Removing Get Airavata Version
new 126ee28 Fixing bug in GetAPIVersion
new 693fe55 enabliing validation in default settngs.
new bf7bd51 airavata-1229
new 2c6cced Adding the client php to required
new fdf34dc Merge remote-tracking branch 'origin/master'
new 6c10f6e fixing a minor issue with exception throwing during validation.
new fe507e4 fixing orchestrator test
new ce10da7 fixing AIRAVATA-1264
new b7ae234 adding ValidatorException handling to createlaunchexperiment
new fc9d762 removing redundant validatorResult class
new f06e75f Changing the case of GetAPIVersion to make it conistant with remaining method names.
new 249a390 implement GridPushMonitorHandler
new bb1cecb Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c6f4cea return ids
new 1a5f1a2 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1d76b48 generated code
new 0ff2415 Quick update for consistency with other clients.
new 928e37b updating the catalog handler after the tests
new 2c24439 introducing a namespace for php app catalog models
new 507686a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new fb7f491 adding hostname as alias by default
new 3c19939 removing registry start in app catalog
new f0f9ac9 fixing var name type
new 593d5a7 adding the listing compute resource sample
new 25bac69 updated timeout
new baa69e8 increasing min threads for the thread pool - AIRAVATA-1266
new b240462 Merge branch 'master' of github.com:SciGaP/Airavata-PHP-Client-Samples
new 123cf87 Changing the API operation case
new 124e286 AIRAVATA-1264
new effb4d7 adding php samples to list application interfaces and add compute resource descriptions
new 93e6a37 adding php samples to list application interfaces and add compute resource descriptions
new 650e545 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 25cafc0 (Airavata-1260) Making suggested modification.
new d233abd Configuration was not updated. AIRAVATA-1269
new 3eac761 fixing gsissh protocol data retrieving issue
new 7e022ef Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3bcac35 Changed the configurations to ini files as discussed in AIRAVATA-1250
new 719142d removing threading in launchExperiment
new 2ce9c12 adding new samples for app catalog
new 65b084f introducing app catalog server/port configs and using the ini file to load server/port
new d33b96e not reusing client
new 059d16b adding app catalog model classes & updating app catalog service class
new 353b736 refactoring to use specified resource job manager than hard coding slurm
new d8ef967 handling the scenario which the host descriptor does not exist
new 9564e89 inserted name and organization
new 3dafb00 Launch need to be update before launching as there are other stauts updated at GFAC level. AIRAVATA-1273
new e1f5140 changing compute resource name + changing names
new 2884bda did some expception handling to debug AIRAVATA-1275.
new 1a8a19f Sample to test same application on multiple hosts and fix to make it work. AIRAVATA-1276
new 6ff2f69 Added valiation of experimentid. AIRAVATA-1222
new 277b467 Adding a timestamp to avoid duplicate names
new d918468 adding search by application id - AIRAVATA-1278
new 36a0b8c fixing AIRAVATA-1280
new 5153d0c fixing AIRAVATA-1281
new 11b1b9a fixing gfac service implementation
new 4b51e7f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 92ddf3e Added check if the host and appliation name is not set in registry.
new b3f7b25 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c06bd90 fixing outputMessageContext issue
new 1dd6486 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 233f796 fixing AIRAVATA-1279
new a9c337d removing database scripts from airavata-api-server
new 3c5774b fixing status update issue in trunk
new d87023a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7100e38 Adding WRF descriptor on trestles
new a6de79b Merge remote-tracking branch 'origin/master'
new ac038ce Changing the WRF Sample to use 64 cores
new 867778b fixing the name with WRF sample
new d8bd3d1 updated library
new 3e08f21 Added WRF sample and fixed outut handling
new c072a39 fixed the merge
new 79ea2f1 fixng output handling for uri types
new e3b0bf2 Fixed output movement and output location updating. AIRAVATA-1284
new 0fadb08 fixing AIRAVATA-1285
new bf5f8c3 adding proper entity manager closing and exception handling - AIRAVATA-1285
new 8b5f272 adding more fixes for AIRAVATA-1285
new ace68a6 removing unnecessary properties from OpenJPA configuration
new 33fafe0 Cleanup the output handling to register outputs. AIRAVATA-1284
new c83330e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 125098d fixing AIRAVATA-1235
new 47f6ed3 fixing AIRAVATA-1204
new 013a815 fixing AIRAVATA-1288
new a728ab5 making JPA cache limit configurable from server properties
new 18fb76e AIRAVATA-1283 - Added support for hostname in all servers.
new 3f89830 Add search experiment scripts.
new 6abdb5f adding the new sql script in new module
new b9cd25b adding the jpa-app-catalog to the main module
new 015176b [maven-release-plugin] prepare release airavata-0.12
new 49f3b11 [maven-release-plugin] prepare for next development iteration
new 2bcadf5 fixing AIRAVATA-1297
new 48cd362 adding app catalog data models
new 87f6fbd fixed scheduling info
new 1a73058 Fixed AIRAVATA-1299.
new 41a2c86 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e088226 updating the sample for the changes in the thrift API
new f92e9a7 fixing build error in the app catalog
new bc20a06 Fixed the compliation error. Case was wrong.
new 6458260 Made changes to SCP connection creator and add third-party transfer.AIRAVATA-1300
new 362da4e committing the initial version of zk work with resubmitting all the failed jobs to the available gfac cluster nodes
new e44da0d revert versions
new c35e21a [maven-release-plugin] prepare release airavata-0.12
new 3029ff4 Updating release notes
new 5f18454 Merge remote-tracking branch 'origin/master'
new 2233d42 [maven-release-plugin] rollback the release of airavata-0.12
new 054cc52 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2eb31e0 [maven-release-plugin] prepare release airavata-0.12
new f723d49 [maven-release-plugin] prepare for next development iteration
new e86504a more zk related changes
new 3481653 Merge branch 'zk-work'
new d56dd44 adding new type of handler
new 4c34a51 fixing build error
new 5c7acf3 initial changes to make credential store as a seperate webapp
new 4d9b92e adding missing classes for credential store
new 4217a17 adding security model to build
new d7c7116 move the orchestrator submitter to embedded mode
new a1bb763 More fixed for BetterGFacImpl
new 9526ceb updating database scripts in credential store
new 236c04a Adding more features to zk implementation
new b62e67d compute host description
new 59ffdfd updating taskdetails and orchestrator service https://issues.apache.org/jira/browse/AIRAVATA-1301
new 29f94c3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f9ceaeb Removing the unused import.
new 3456236 Merge remote-tracking branch 'origin/master'
new c6d78a4 updating to use new thrift file for computeresources + fixing some typos
new b9c9d24 generated code for updated TaskDetails model and Orchestrator service
new 441bf76 adding the launchTask method
new c05fd14 Committing the version 1.0 of Zookeeper implementation
new 109b679 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5e81196 Adding more recoverable Handlers
new 90c47de adding compute resource related data models - AIRAVATA-1236
new 6da674f Making GSISSH Input handler recoverable
new 3a84ee8 Making GSISSHOutputProvider a RecoverableHandler
new 5662d5c Sync'ing with new app catalog models.
new fdb3daa Merge remote-tracking branch 'origin/master'
new dde984a Sync'ing with new app catalog models.
new bb958aa Sync'ing with new app catalog models.
new ffb186f Adding comments to descriptions.
new bed0745 adding the resource interface
new e7bb565 adding app-catalog openJPA models - AIRAVATA-1236
new 37df1e0 adding app-catalog resource layer implementation for compute resource
new e31265c https://issues.apache.org/jira/browse/AIRAVATA-1301 + introducing integration tests
new f0aae9f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a886c0c updating app-catalog constants - AIRAVATA-1302
new 91e2c0a Adding host alias resource initial resource class
new 407c9ba adding app deployement related resource classes - AIRAVATA-1302
new 07bb535 adding the credential store token to launchTask function
new 20d1d7d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8d51973 adding ochestrator service - generated code
new e565ae4 updating the thrift services to pass the credential store token to the orchestrator cpi
new 33a6d8b Adding credential store support for gsi-ssh plugins
new 2e36ba4 adding more resource classes - AIRAVATA-1302
new 69be6c7 removing the app-catalog jpa module and adding resources
new da5d2f3 updating the resource layer
new 9c4a19f adding more resource layer classes
new f048c8a adding more app catalog resource classes
new 856b557 adding missing app catalog resource layer classes
new 9dcb8ba adding resource utils - AIRAVATA-1302
new 3868d50 adding resources with serializable - AIRAVATA-1302
new 77970e0 allowing app catalog db to start when app catalog thrift server starts - AIRAVATA-1303
new 8ebb254 adding generated code for app-catalog
new c97832e Unifying multiple mysql-connector-java versions.
new c84bc06 Removing duplicate pom dependencies
new 3d5b9a6 app-catalog CPI - AIRAVATA-1228
new df55c5b Removing third-party repositories
new 8994fc8 Merge remote-tracking branch 'origin/master'
new 41dd801 fixing build
new eaf09bd moving unicore repo into bes provider. This should be removed soon.
new ac8bbf0 fixing a bulid error
new abd7f19 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 227c78d Generated data models of app catalog
new a1bf439 a meta thrift model to include all app catalog related data models
new e0f21e4 updating app catalog data models
new 6843720 updating app catalog data model namespaces
new 45b3c4b generated data models with modified namespaces
new 373d1dd adding app catalog CPI - AIRAVATA-1228
new 8b8dca6 adding app catalog cpi implementation - AIRAVATA-1228
new ce12798 using service names to disambiguate
new 6f0b74c Merge remote-tracking branch 'origin/master'
new c1718d6 app catlog cpi impl - AIRAVATA-1228
new 673c0fc updating the workflownodedetails with type
new 7147020 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 515eb10 updating generated source for workflownodedetails node type
new 2d0ebed app catalog cpi implementation for compute resource - AIRAVATA-1228
new f36f43a Integrating credential store to airavata to job submission and file transfer and directory creation
new 462b241 updating db to incooperate node type
new 98b738e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 31c84b6 updating workflownodedetails constructor
new 2fe5d9e Making AdvancedInputHandle recoverable
new 3a2c052 app catalog cpi impl for application interface - AIRAVATA-1228
new 45a73f4 temporarly adding the unicore maven repo to fix the build.
new 506593c Merge remote-tracking branch 'origin/master'
new 3c2b11c app-catalog cpi for app-deployment - AIRAVATA-1228
new 76607a2 adding test case to save basic compute resource and retrieve it - AIRAVATA-1228
new 0aec0da preparing merge of Airavata-PHP-Client-Samples into airavata repo
new 9800cd3 removing conflicting license
new 7034f50 Merging airavata php clients from github
new c09963a moving php command line samples and pointing to airavata sdk - AIRAVATA-1274
new 465ca53 Pointing libs to airavata SDK - AIRAVATA-1274
new 01f648a Pointing libs to airavata SDK - AIRAVATA-1274
new 4d338df Moving samples into SDK directory for packaging - AIRAVATA-1274
new 409c986 Fixing PHP Client Packaging to properly unpack and include the required files - AIRAVATA-1274
new 6a30776 using unicore-client from maven central
new 535ed32 Initial API Methods for deployment and Interfaces - AIRAVATA-1296
new f03e6ec Merge remote-tracking branch 'origin/master'
new a2a2714 implementing AiravataServerHandler to call app catalog cpi - AIRAVATA-1228
new 8456e5b adding test class to compute resource - AIRAVATA-1305
new 81e2b9f fixing additional comma in db script
new a30f8ae removing seperate app-catalog thrift server start up from destribution
new a460074 adding test class to appInterface - AIRAVATA-1305
new 7265490 Bumping apache parent pom and maven compiler plugin versions as discussed in AIRAVATA-1306. Assuming lazy consensus, revert if disagree.
new 54d02d4 adding test class for app-deployment - AIRAVATA-1305
new 85348ae https://issues.apache.org/jira/browse/AIRAVATA-1309
new c60ba81 adding generated code - AIRAVATA-1309
new ab566e1 adding more test functions - AIRAVATA-1305
new bd9c12d adding app catalog data model util classes
new 07c3f78 fixing typo in appInterface thrift file
new 720be04 AIRAVATA-1309
new 1fc2413 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1ae4201 update method name change
new 169e6f9 Updating ComputeResource Namespace to align with application descrrptions - AIRAVATA-1203
new 0a00253 Updating ComputeResource Namespace to align with application descrrptions - AIRAVATA-1203
new 15c8630 Initial draft of the gateway profile - AIRAVATA-1318
new ca1662b modified the connection class and added send timeout (thanks to supun)
new 2262500 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f0f3bf1 Gateway Profile updates - AIRAVATA-1318
new efca3d6 Merge remote-tracking branch 'origin/master'
new 527900b Adding a prefered batch Queue
new 4d109fd adding jpa models and resources for gateway profile - AIRAVATA-1318
new 2338739 Updating Compute Resource to better handle decrsiption of multiple protocols - AIRAVATA-1203
new 52cedac Updating Local Host details - AIRAVATA-1203
new 59a7443 Committed generated classes for thrift models - AIRAVATA-1203
new a7ce476 gateway profile cpi impl - AIRAVATA-1318
new cc191f9 Changing the name to more precise.
new c4268c1 Missing generated types
new 2c32d42 adding jpa class gen project
new b103e79 removing entries of missing modules
new e5688a7 Updating ComputeResources descriptions - AIRAVATA-1203
new 429505a Merge remote-tracking branch 'origin/master'
new 8288ee0 AIRAVATA-1236
new 2e04f68 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d650ddb Adding comments to thrift models
new c42adb4 AIRAVATA-1236
new 30388a1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ae1fe88 AIRAVATA-1236
new 046e2fa AIRAVATA-1236
new b085e96 AIRAVATA-1236
new 097d955 https://issues.apache.org/jira/browse/AIRAVATA-1228
new c18872c adding an id for the resource job manager
new fd5288a adding an id for the resource job manager
new 08245f2 Updating the thrift files documenttaion - AIRAVATA-1228
new b0062bb adding the updated CPI
new 6a84bdb https://issues.apache.org/jira/browse/AIRAVATA-1228
new fa71e06 adding no arg constructor
new 268dd34 Removing the legacy api file
new 2909ae9 https://issues.apache.org/jira/browse/AIRAVATA-1228 + updating jpaclass gen to include the empty constructor for PK class + update the document creator to add localhost apps
new b12dac5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e13ea82 adding module dependency for app-catalog-cpi
new 9d5f017 Fixing a typo
new 4ccab01 Merge remote-tracking branch 'origin/master'
new a9cdafd updating method name
new 53d62d1 API Method placeholders for compute resource - AIRAVATA-1228
new fe4ac34 Removing the unused registry service poc.
new 1091586 Adding parallelism type to deployment - AIRAVATA-1203
new 5ba1bb7 Adding the missing enum generated class
new b60c43e updating code to have the parallelism parameter
new ec20d1e updated document creator
new 192fc8b updating the script table create order and duplicating for tests
new fb09b38 adding the util class
new 989ee45 test
new ac050e7 test
new cb1c4bf test
new c853ffd test
new 152acbf Adding job manager and data movement API functions - AIRAVATA-1296
new 8808aaa implementing the service functions
new f7008b9 Adding update methods to change priorities - AIRAVATA-1296
new e085880 Disambiguating GatewayProfile from GatewayResourceProfile. App Catalog deals with later, while admin API will have to deal with former - AIRAVATA-1228
new 5328757 Gateway Profile API Funcations - AIRAVATA-1296
new 2d5d054 API Methods required by PHP Gateway - AIRAVATA-1296
new e36c042 updating to use the api instead of the cpi functions
new 8e5f057 implementing some of the api functions + updating integration tests
new c290a04 Adding the Airavata API Dependency
new 0d4a7d1 Adding the missing gateway profile CPI methods
new 964b6af adding ssh key storing and retrieving in credential store
new a022bba Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 25f4f5f implementing mission gateway profile cpi impl
new 2c54484 GFac is integrated to use app catalog ..but internally fills in legacy models to minimize changes - AIRAVATA-1309
new 66a672b adding new class to keep ssh credentials from credential store
new b2c2204 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new beb7471 adding default type to parallalism
new 2f3ece5 update to save the resource job manager + update hte api funtion impls
new b71499c update to save the resource job manager + update hte api funtion impls etc.
new f582645 adding test classes to compute resource
new a509e5a fixing compilation error in OrchestartorServerHandler
new fa44d62 adding module load cmd table
new afe4141 Using the correct setter in orchestrator handler
new 0fde9bc Adding missing API list interface functions
new c7a3300 adding getall resource and getAllIds method
new 9a7ee5b implementing getAll in server handler
new 07e6009 refactoring the bettergfacimpl
new d9df541 module load comands
new a167caf updating ot use the new document creator
new 38c629e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a1b5882 setting is empty
new 2511edf adding the return statement for empty case
new f96ff89 fixing typo
new 0b88173 bull chk
new d76cf9e setting isempty parameter
new 4d2805f adding methods to remove datamovement interface and jobsubmission interface
new 7295d10 using the gateway name as the gateway id
new 8ac30e2 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 55d3aee updating a typo
new 58686d1 Adding missing Application interface description
new d52e8f7 Merge remote-tracking branch 'origin/master'
new 43ee9ea adding description to app interface
new d630771 bug fixes and typos
new ea35177 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b70474c updating computeresourceprofile creation step
new 3630458 adding test class for gateway profile
new 9c5d4bf fixing issues in document creator
new 76fb56d Changing SSHHosts to also have HPCApptypes and adding appdesc to appcontext
new cf945f0 Merge remote-tracking branch 'origin/master'
new d1d3fae Updating PHP Samples - AIRAVATA-1274
new 40198cc fixing issues
new bdad5c6 updating to use the app id
new 5d6cb29 adding getting list of all gateway profiles
new a34c0d9 retrieve gateway id from the gateway name and use that to retrieve the preferences for the computeResource
new e53cba9 Updating port to gw111
new 962389c Merge remote-tracking branch 'origin/master'
new d953a3f updating to use the existing gateway id
new a33dd2a making experiment input value clob
new f8f280f updating to increase the retries + refactor test code
new ea73b0b reintroduce integration tests
new 6ed8348 updating the warn message
new e53dd34 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5c00a8c chking if zk exists
new c6bf090 using app id instead of app name
new de2f7ce disabling orchestrator unit tests until adding the zk support for them
new b26219f test method to getAllComputeResources
new 8dc8057 removing isEmpty field from modules
new 4639e38 removing isEmpty field from modules
new d0a8c44 fixing thrift conversions issues and gatewayresourceprofile selecting issue
new fe2fec5 fixing thrift conversions issues and gatewayresourceprofile selecting issue
new 98f60f3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8318768 removing isSet filed from OutputDataType
new 6d0d4f1 Fixing a simple echo job on trestles
new 7661ac6 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 36393ac adding bigred doc add function
new 28fd065 updating parameters for launch sample
new 3b9fae4 Updating sample names to match API names
new dfb744d Merge remote-tracking branch 'origin/master'
new 58e8fb9 udpating the integration test to split the return string from document creator class to extract the app id
new bfaf817 more fixes in client code
new 407dbbc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a125a6b Committing update interface sample
new 7e2c4f0 Merge remote-tracking branch 'origin/master'
new 417a310 fixing issue with update app interface
new 2bd6d33 creating the server start file in bin location
new 4244103 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b61f6a0 Update to PHP Client samples. Will commit the re-organization into features next
new 607dd92 Merge remote-tracking branch 'origin/master'
new 1725ccb update app deployment
new e796062 Adding CPP namespaces to address - AIRAVATA-1334
new 4a8e957 Merge remote-tracking branch 'origin/master'
new 8577cea introducing new workflow thrift files
new fa6e188 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 57c4e99 fixing clob issue
new 850c4a3 adding generated thrift workflow files
new 6d62eda Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b04478b adding the workflow service implementation
new 40d6a85 updated thrift generated file
new 533129f check for empty experiment names
new fcbbc7e fixing bigred2 support related issues
new 53edab4 updating app-catalog cpi to get all compute resource map - AIRAVATA-1335
new 5e5ee1b added a thread sleep to wait until the job started
new e2ebec1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bee9068 Changing the success message - AIRAVATA-1337
new 567437a Using the simpler CPI method to fetch resource names
new 210ebad Changing the getAvailableAppInterfaceComputeResources to return name and id resolving AIRAVATA-1335
new afdba81 allow search projects for partial strings - AIRAVATA-1333
new 78cd7b3 allow search with * - AIRAVATA-1333
new 7d72e22 update the log messages
new f891b7d Added c++ client samples for integrattion of airavata with any other application's c++ interface
new 4925c2e adding echo BR job support
new 8ea2f0e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 85a2c4a return empty list instead of null
new e5dbd05 updating the artifact id of php client sdk
new 2c96813 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6c52e86 test
new 3c4c584 using the parameterized gateway id
new eeefbc2 get gateway from serversettings
new ea7c19b fixed create and launch experiment
new 672d146 more php samples
new 743d9cf Fixing wrf stampede issue
new 8b3b254 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 12fd04e changing wrf stampede
new 5a43021 fixing wrf on stampede
new 00b8aaf removed unnecessary files, updated ini file
new 81ad6ea removed backup files
new ff8f14c Changed port in ini file to 9930
new b6392ef Samples application as discussed in - AIRAVATA-1344
new 3e151ce Application Interface Examples - AIRAVATA-1344
new c37054b fixing tests in orchestrator and fixing NPE for AIRAVATA-1342
new 1c5b22a Fix AIRAVATA-1342 for status
new d805912 checking for NPE for inputs and outputs
new 2beace3 checking for NPE for inputs and outputs
new 90569d8 fix AIRAVATA-1346
new c3ca7af Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d813b8b fixing the intermediate experiment status null issue
new f21be55 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 383373e removing the unwanted thread sleep
new f903d84 Updating Registration Clients
new 8a62989 Merge remote-tracking branch 'origin/master'
new 40c5db4 fixing NPE
new da56dcb adding amber docs
new 50c7475 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f13b4eb file download for SSHOutputHandler
new 4e19256 updating the app deployment filtering function + refactoring the error message logs
new d64741c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0714710 using the input parameter name instead of arguemnt
new add6eee adding amber support
new 95d35ad Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8121d46 updating to create output objects manually when experiment does not create the output parameters
new 7a378a6 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new beb139e application name used instead of app deploy description for app desc
new fcfbec3 Updating trestles description
new 8117f63 removed thread sleep.AIRAVATA-1346
new 21ffc69 cahnging pbs template
new eed477b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8d116e9 updating to use the correct host id
new 3e6c815 updating xbaya gui to the new airavata
new feb3044 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 606388e cpucount fix
new 1416f2f making ssh async
new 498c5c5 Updating job submission text
new d55cc6c fix in monitoring
new 5d68f7b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new dfe99b8 fixing EXECUTION_UNIT
new 1c73a84 workflow node status update
new a6ba188 fixing xslt
new a563e94 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a8974b7 introducing workflow support in airavata api + other related modules
new 0095c91 introducing workflow engine cpi
new 780351d fixing xslt
new 4b7689a fixing xslt
new bceaed3 renamed client samples to client_samples
new f0486a2 renamed client samples to client_samples
new c9af283 removed old directory client samples
new a0f5419 fixing xslt
new 69769b8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata into HEAD
new 53dd791 fixg monitoring issue
new b991fe3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 779b618 fixg monitoring issue
new c424c37 fixing workflow serialization and deserialization issues
new b197a6a Updating path of applications
new 731688c Merge remote-tracking branch 'origin/master'
new e18f552 Updated application samples
new b0fde67 fixing monitorng
new 82f34a4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new feb1d32 modules/gfac/gfac-core/src/main/java/org/apache/airavata/gfac/core/monitor/MonitorID.java
new 80d1b2e issue with clone and update project
new 4752d1a fixing the workflow save and load issues to the registry and the ui dialogs
new 601d5ad removing unwanted expeirment status publishing in the gfac
new fdb54d0 more logs for monitoring and launching out handlers after more unknown states
new d89835b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1e8331f cloning experiment issue
new e019c86 Temporarity disabling integration tests as there are left over processes
new 92244d6 Merge remote-tracking branch 'origin/master'
new 6a4b162 Updates to PHP Samples
new 16d2d38 Updating the slurm script within the gsissh resources
new b0618e4 updated tester script
new d83a844 Updating Identifiers
new 1a223e8 Merge remote-tracking branch 'origin/master'
new cc0bc99 Fixing the assembly plugin to include directories instead of files
new f4b384b disable samples
new e2f03a1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4b266f2 Updating cpp arifact id
new 8edd711 updating the test code
new 565ea4b modules/gfac/gfac-ssh/src/test/java/org/apache/airavata/core/gfac/services/impl/CredentialStoreTest.java
new 92838e4 moving about status listener classes out of hte gfac
new 9a7299f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new cd29e74 adding app-catalog tests back
new 6151527 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a66dbe4 Adding missing ASF V2 license headers
new c893539 Adding missing ASF V2 license headers
new d63455a Adding missing ASF V2 license headers
new 0643c3a [maven-release-plugin] prepare release airavata-0.13
new d5b1b2d [maven-release-plugin] prepare for next development iteration
new 16cd757 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata into workflow-support
new d9d3546 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 10103a4 removing app catalog database from previous registry
new 342d8e9 adding host id to generating application deployment id
new 915eda2 updating versions and fixing merge issues with the master
new b69cf69 fixing parameter derivation issue
new 4ea83c8 revert last change
new 81a21c5 Merge branch 'workflow-support' of https://git-wip-us.apache.org/repos/asf/airavata
new 88269c4 fixing hard coded hostid for br2 create experiment
new c61d438 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e6126da Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4ae0104 adding new field for jobDetails object
new dd7e6c7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2e28d53 updating the pom version
new f569390 updating pom version
new 5a22a35 fixing monitoring to monitor with job name too
new 03eccea Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0f10016 Adding samples for ultrascan application.
new e61a290 Compile problem in test.
new d9f4dc0 fixing monitoring related issues with start monitoring with jobName rather using jobID
new 1a2411d fixing bigred 2 monitoring issues
new aef99c0 adding zk in embedded mode
new 3bf8e23 Fixed AIRAVATA-1367 for SGE. Its defined as UGE
new 5398ba7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d498c7b Cleaned up the imports.
new f5a7376 commenting out credential store test class due to build failures
new f65c5a8 fixing saveComputeResource method
new 7d07911 fixing test cases with embedded zk integration
new 744ef76 adding cloud submission details to computeResourceModel.
new 0fc00b4 adding new job submission
new 3f21634 adding new submission protocl
new 40c4477 distributing updators and updating interpreter
new d9e82a3 adding workflow related implemetation to app-catalog
new 7536fb6 adding missing interface
new c29a6a9 Fixed AIRAVATA-1371 and AIRAVATA-1367.
new d6ffefa Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f29d7e6 Fixed compilation problem.. need to investagte how to include job notification if job id is not created for experiment data. There is a null pointer coming.
new 1fe3d1d adding initial messaging framework changes
new 785394d updating branch to use new status change events
new dcc647e update airavata to use new events
new 722de6d fixing build issue in tests
new 8a8a02b Merge branch 'master' into messaging_framework
new c1d7cf7 added return type check based on the ssh command. it will ignore if a working message any other error or warning message is returned.
new 9e6c04b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 23924b9 Removed the not check. I added command specific contains. AIRAVATA-1382
new 3a0d21f Fix AIRAVATA-1382 (stdout is returning a warning) and AIRAVATA-1372 (ArithmeticException: / by zero)
new ff009a1 have to remove not condition
new 3721954 Tested the null conditon and command check.
new f37dad8 Added new method to get monitor command and create client without zookeeper.
new 34e0b87 Create working directory was called twice.
new 538e37f passed the install path to get the command only
new b19a8e0 changing the server instance to localhost instead of gw127
new 1c55448 ading initial version of terminate experiment
new 404913a adding created time and update time to app catalog
new a429677 more implementation for job cancel
new d62a957 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c44ec63 Corrected and formatted php messages prompted at command line
new 010b85f Resolving conflict in .ini file
new c21f1d1 fixing test failure in app catalog
new bb8e448 created time and update time for app catalog and update API version to 0.14
new 6b519e2 Updated Xbaya to enable execution of a single application through thrift api
new 3cab2d6 fixing AIRAVATA-1360
new 011f019 implementing cancel experiment method
new d0fcdb1 fixing compilation failures in the build
new bedf7c0 Updated Xbaya to enable execution of a single application through thrift api
new eb9bda8 more improvements to experiment cancel feature
new 414f2b9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9c1f44d fixing AIRAVATA-1361
new 5a750b3 fixing AIRAVATA-1353
new 7420d8c Updated cancel command. AIRAVATA-1402
new 83cb4bf Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4056bb9 Added a menu item for executing applications, restored previous workflow launching menu action, made composing workflows for executing single applciations optional
new 91dc82d Merge remote-tracking branch 'origin/master'
new 4fbe57d fixing stampede job cancel issue
new 3a927d8 more improvements for job cancel
new 5bdb49d fixing GFACSSHUtils.java
new 6305d3a fixing AIRAVATA-1404 and AIRAVATA-1405
new aa4cd2c fixing AIRAVATA-1409
new b153282 Update data tranfer details.AIRAVATA-1410
new 5557902 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new abdaa8b throwing exception when launch fail in orchestrator and make the experiment status fail
new bf9b277 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9ee9dd2 Fixed AIRAVATA-1413 to load the output location
new 21cae7e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 56b5375 changing the cancel job status properly.
new 963f42d autoreconnect=true
new 208e9f4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f72637f retiring previous registry API - AIRAVATA-1234
new 98f4110 adding more to AIRAVATA-1234
new 84cabd3 Merge remote-tracking branch 'origin/master'
new 5901e08 Using register sample instead of document creator - AIRAVATA-1415
new 36d0b76 Make the RegiserSample methods to be instance instead of static - AIRAVATA-1415
new b3775ec Updated the client with new parameters.
new 6c4471a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new acac1b0 fixing expired connection issue in pull monitoring
new fb98560 fixing a compilation failure
new e8e6949 possible fix to AIRAVATA-1418, need to test
new 6821ce1 fixing AIRAVATA-1418
new 6c500f2 Allow usee to send the file URL to move the files. AIRAVATA-1419
new 4adcce9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ce09a50 fixing https://issues.apache.org/jira/browse/AIRAVATA-1421
new 9e713ab To make remote file trasfer work.AIRAVATA-1419
new 0cc27df Fixed naming the stdout/error with experimentid and date. AIRAVATA-1421
new 360a5be adding info log
new 3f28978 Adding more logs
new 1718264 removing duplicated logs
new 0231873 more logs and proper error message when output is empty
new 36e93a6 Fixed gfac instance list init issue when call Orchestrator with initial GFac instants list
new 93e37db Merge remote-tracking branch 'airavata-github/pr/4'
new ca51044 (Airavata-1425) Adding a tools directory and a GSISSH command line tool for testing GSISSH libraries.
new 787cb3b clean up repo
new ea5da33 Remove unnecessary tar
new 39798cb Merged pull request send by Nadeem for fix AIRAVATA-1389
new 6b9d3c5 Merge branch 'Fix_AIRAVATA-1389'
new 16cd6e1 (Airavata-1425) Adding log4j.properties to do verbose logging.
new b46fffe Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f15a9d7 (Airavata-1425) Small updates to the gsissh client tool.
new 2936cea Explaining how to set the classpath
new 92ad9f1 fixing a issue with comparing two hosts, this will enable running one command per host for a given user to get status
new 68e81ef adding push monitoring to find the job complete and fixing issue with output stream reading
new 78ad2ef GFac pull monitor Write job count to zookeeper
new d004df1 Merge branch 'master' into StoreGFacsJobCount
new 45f0d68 Optimized zookeeper update code, only update if job count is differ from exist job count
new e45607a removing temporarilly
new 2207ece fixing the templates
new 9c23aa8 Optimized zookeeper job count update process to update job addition and job deletion steps
new d1d8759 Merge branch 'master' into StoreGFacsJobCount
new 59d6675 removing logic when unknown state came during monitoring
new 87c0ee2 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8eb65c6 Fixed AIRAVATA-1430 to parse stderr.
new ed5f886 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 05b9be7 Fixed AIRAVATA-1435.
new 2e109fa fixing AIRAVATA-1434
new 8abc4d3 adding a throttleResources flag as described in - AIRAVATA-1438
new e257af7 publish messages to rabbitmq
new 1e79c24 Added a check to fix AIRAVATA-1439.
new 014c123 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ee1df1b fix AIRAVATA-1439.
new b8bb82c Improvement to zk usage in orchestrator
new 288fb82 adding rabbit mq
new 17e8fd3 fixing error condition
new d7bb140 adding more clear logs during startup and failures
new 5df1c04 fixing erroneous condition
new 024fc5d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2a55d83 Fixing zk reconnection issue, this will be useful during debugging
new c653895 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a7581e7 adding pull request
new 9dac178 fixing synchronization issue with monitoring queue and zk reconnection issues
new c625126 cleanup schemas
new 7542f69 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 003832c removing unwanted sleep
new e887232 fixing monitrong issue with large number of jobs
new 69ada18 increasing the failed count and completely rely on amqp monitoring
new 9661423 releasing finished jobs in separate threads rather invoking output handlers one by one in a single thread. if output transfer takes longer time monitring will be delayed
new 5305b30 reverting CreateLaunchExperiment
new 716b85f modifying logs to get a better view of monitoring
new 822bbe8 modifying logs to get a better view of monitoring
new b8deb9e modifying logs to get a better view of monitoring
new 450d249 fixing ArrayIndexOutOfBoundException during malformed qstat output
new e5c4d33 reverting CreateLaunchExperiment
new 5996b5c Adding threadpool for running output handlers- AIRAVATA-1450
new 6a11b29 Fixed with current flags. With Application catalog intergration we will be able to provide a better fix. AIRAVATA-1449
new cc0f8ec Revert last commit to CreateLauncherExperiment class
new 412f1e7 Adding broker url
new dac39e0 Fixed RabbitMQ calling for SGE. AIRAVATA-1451
new d6e8b19 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5ea8f2c Changes to push error. AIRAVATA-1452
new bdd025e fixing threadPool implementation to used during input handler execution
new 75fd7e4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c366ade reverting the commit to remove integration test from the build
new 3f89868 fixing zk error due to complete jobs is not properly handled
new 21c9a92 fixing a bug in completed job handling
new 88d8638 new message thrift object
new 1c00c54 Fix AIRAVATA-1452 for error messages.
new 0df74e9 merged the changes
new aba775e adding an exception
new 7ed2e34 adding an exception
new 61214db adding code to send the events through rabbitmq
new cc71bac updating publish method in listeners
new aaba6d6 Fixing more issues with push monitoring
new 72f3524 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7a4f202 updated pom to use jglobus 2.1.0 and added bes related handlers
new 2b73d47 updated bes and gram code
new fa52958 jglobus version update
new 7c803ce stdout/error was not avaiable so retry 3 times. AIRAVATA-1449
new 45e0185 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bf8f3d0 Fixed AIRAVATA-1453 to retry 3 times
new 255dd9e removing recursively calling publish
new 5c389b9 Close ssh session. AIRAVATA-1456
new 1090843 move the cluster connection out. AIRAVATA-1456
new be767f1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 94f5bcb Coonection is closed in output handler. AIRAVATA-1456
new 9018dc8 Re-using gsi/ssh connections without creating them everytime for a given user/host/port
new 71de39d Moved to a static connection map. This is better as we will use one ssh connection for all the jobs. AIRAVATA-1456
new b78e04e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4917ce2 Optimize scp connection for client data movement. AIRAVATA-1456
new ffe8b9f fixing src/main/java/org/apache/airavata/gfac/monitor/impl/push/amqp/SimpleJobFinishConsumer.java
new 5528503 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ec87ecb Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9372890 adding retry during failures
new 3800bc1 fixing job Id not properly extracted, this will be usedin cancel
new 44dc03b avoiding unknown status
new 2bbeb7a removing thread-pool and adding sleep before reconnect
new 1e6a7ba Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3cca77d fixing issue with file exist operation in monitoring
new af6b9d5 adding the monitoring object back to the queue when exception is thrown
new c682529 resetting the failed count when the job is not yet finished
new 9258b90 fixing more amqp related issues
new a256f35 fixing more monitoring issues
new 595be55 Added airavata logger implementation and Fixed AIRAVATA-1462
new 075744e Resoleved merge conflicts
new 881d169 set zookeeper and globus log level to INFO
new 3c5fd4b removing retry in job submission
new 06b79c3 removing retry in job submission
new 3615898 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6673430 handling another errornoues scenario
new 10139ba fixing the command comparision in standarderror and make the job submission fail
new c2b9158 fixing error while adding error details
new b810ee5 fixing a file transfer error
new 18f7092 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 73856bd fixing a file transfer error
new 1ef608c fixing issue with not updating fialed status when output handlers fail
new cbfeb2c To retry output finding 3 times and handle multile output case.
new 2b0b6a2 fixing duplicate task status
new 42fee53 removing session.disconnect during error because we maintain session in static level
new 6509334 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 552f9b1 remove channel.disconnect()
new 60de539 more logs
new dbb1c97 adding workflow related data models
new 282362f merging messaging_framework changes with master - AIRAVATA-1442
new 00e2420 Added ultrascan application under OGCE account.
new 57adb55 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 42219ba stabilizing the code to handle large load
new d70b9d3 Removed airavata-client-api dependency from other modules
new ede9523 Removed airavata-client-api dependency from other modules
new 896d345 Merge branch 'master' into workflowEngineImprovement
new a9a370d Fixed workflow interpreter to work with multiple app
new 7de0871 merging changes
new a4c186c handling the jcraft concurrency issue in airavata level
new 3b63a28 removing unnecessary static map in scp input/output hadnlers
new 532233f removing unnecessary static map in scp input/output hadnlers
new cc87222 removing unnecessary static map in scp input/output hadnlers
new 9b5a4fe removing unnecessary static map in scp input/output hadnlers
new f84eeea fixing a listdirectory checkup due to fast amqp message recieve
new b6ca98a Extended multiple apps support to trestles , stampede and bigred2 compute resources
new 3fa5c50 src/main/java/org/apache/airavata/gfac/gsissh/handler/GSISSHOutputHandler.java
new fd81a3d src/main/java/org/apache/airavata/gfac/gsissh/handler/GSISSHOutputHandler.java
new ad02735 src/main/java/org/apache/airavata/gfac/gsissh/handler/GSISSHOutputHandler.java
new 8b978c6 rabbit mq consumer
new 61fa9e5 Used node Id instead of node name to get the default inputs
new 8cfe4f9 Merge branch 'master' into workflowEngineImprovement
new 42bc8de Fixed AIRAVATA-1465 to read user information.
new 7781079 rervering the changes in 42bc8defb to fix the funcationality
new 2fa6af6 Fix AIRAVATA-1465 and NPE.
new 3989e08 fixing synchronizing issue with the monitoring queueu
new 7496f50 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e7be1f4 closing the thrift transport connection during gfac invocation
new 6e1aa3e closing thrift client connections
new 166ea52 return type to message in consumer
new a82045d adding more to the message consumer
new e515651 removing mysql credential store properties and update consumer
new 11002b7 adding message context as the new module
new ccebc44 changing from fanout to direct
new c39d0fc adding the capability to register multiple consumers for the same channel
new 007c143 Integrated XBaya mointoring panel and execution node highlight
new 1e520bc Merge branch 'master' into RabbitMQMessageMonitoring
new 9aeed4d Cleanup airavata server property, removed unused files and other property cleanup. AIRAVATA-1472
new 7e498ac adding more changes to messaging and changing xbaya to fit messaging
new 6e49e37 Missed one place. AIRAVATA-1472
new ce7fad1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 51f456d monitoring experiment statuses and wfnode statuses
new 0c981d6 adding reconnect code to ariavata-server
new 589c71c To start specific servers. Stop stops all the services at this point, need fix. AIRAVATA-1471
new 82da3d2 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 50101e9 removing uncontroled thread creation
new 62ba471 Fire TaskOutputChangeEvent in GSISSHOutputHandler
new 7c2af98 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8d18255 fixing AIRAVATA-1467
new 3b2ea90 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d4bf1e9 Set default faules to dialogs and remove unused code parts, used id instead of experimentId to stopListen call
new 60937d3 Merged RabbitMQMessageMonitoring branch
new 97e94d9 set status update time at consumer
new cb94631 checking whether channel is opne
new 1da5054 unicore provider using appcatalog and exposed through thrift https://issues.apache.org/jira/browse/AIRAVATA-1473
new 19f9ae7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6c6c746 more unicore changes
new 1c95b2d remaining database files AIRAVATA-1473
new 83471ba removed the need for wsdl2java, now stubs are already compiled
new 66de222 adding missing messaging-core dependency
new 98f0319 fixing db startup issue in the build
new 4e47079 missing app-catalog tables
new ff380e0 To resolve build error. AIRAVATA-1473
new 9bcef2c Adding phasta to sample applications
new cbd947c added unicore client dependency and removed the unicore repository [AIRAVATA-1473]
new adb9b95 adding gateway id to messaging events
new 6cf4f87 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1acec7b making gfac threadpool configurable and reducing the size to 50
new 100a35a fixing airavata-server thread creation
new 58528ae updated unicore security context, now it uses MyProxyLogon instead of jglobus
new 18c14f7 properly handle listing files
new a302441 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5b0dfd8 fixing job status of being active always
new 9e750d8 fixing the listDirectory logic in sshoutputhandler
new 9ae7c6e updated credential store with the latest oa4mp-client libs, versioned 1.1.3 (still it needs a quick review by the component developers) - excluded the use of bc-prov-146 on all places - adjusted some code for the sake of compilation
new ce4b324 publushing created state and launched state
new 6e42be7 Added parse and toJSON methods to read and write xwf file with JSON
new 1d83a48 fixing AIRAVATA-1479
new 723b2e9 renamed .xwf file prefix to .awf and fixed issue with QName type
new e5131ad fixing the thread creation in airavata-api
new fc25c72 adding the missing class
new b95e920 change data type to list instead of Set - AIRAVATA-1477
new 47e8214 fixing AIRAVATA-1487
new 6e0ea93 Merged ReplaceXMLWithJSON branch and resolve merge conflicts
new 3b330c0 Removed mislead experiment launched status update and replace it with completed state
new 478d9e5 committing intital gfac app catalog integration
new 0cacb10 Changing gfac-core to use app catalog
new b376951 fixing input/outhandler - AIRAVATA-1488
new 8b82bee fixing AIRAVATA-1494
new a15be7c Added monitor mode enum to computeResourceModel.thrift and changed ComputerResourcePreference's preferred JobSubmission and DataMovement protocols types to their enums
new 99e47f1 fixing AIRAVATA-1488
new a728bf2 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a3cef49 fixing typos in Airavata API and generate code for AIRAVATA-1471
new 306464c missing generate code for AIRAVATA-1471
new 1e992d9 Updated JobExecutionContext with thrift data model types
new add6b58 Removed MonitorMode from JobResourceManager and added it to SSHJobSubmission struct, changed MonitorModes enum values
new 0db9cad fixing errorneous id set
new 14bd941 adding util methods to get job submission
new f29dfbe Removed legacy descriptions from MonitorID, GSISSH provider and utils and AMQPMonitor classes
new 04f09e7 adding BES provider changes
new ad2b1d3 Ingegrated appCatalog thrift model with GSISSH input and output handlers and inprove job execution context
new bb4fe12 Merge branch 'gfac_appcatalog_int' of https://git-wip-us.apache.org/repos/asf/airavata into gfac_appcatalog_int
new 2dd94e6 Integrated appCatalog for ssh and gsi modules, commented out old test classes, need to fix this
new 08fff2c fixing problem with aliases, ipaddresses and batchques
new 9cf6d0d adding delete queue method
new f415e99 Fixing credentail renewal issue. AIRAVATA-1497
new 3fbf952 fixing issue with job submission commands
new ede66ed adding workflow related changes back to airavata api
new 91f5de5 adding API method to getAllModules
new 83ecde9 Integrated appCatalog model to GFac local and hpc monitor modules, commented out test calsses
new e9ee22b adding EC2 provider changes
new 8abe8dc committing intital gfac app catalog integration
new a1e0ec8 Changing gfac-core to use app catalog
new 96a673f Added monitor mode enum to computeResourceModel.thrift and changed ComputerResourcePreference's preferred JobSubmission and DataMovement protocols types to their enums
new 73e21be Updated JobExecutionContext with thrift data model types
new e28919c Removed MonitorMode from JobResourceManager and added it to SSHJobSubmission struct, changed MonitorModes enum values
new 5136157 adding util methods to get job submission
new eb626fa Removed legacy descriptions from MonitorID, GSISSH provider and utils and AMQPMonitor classes
new 3f953e0 adding BES provider changes
new 5a28f74 Ingegrated appCatalog thrift model with GSISSH input and output handlers and inprove job execution context
new d94e8c9 Integrated appCatalog for ssh and gsi modules, commented out old test classes, need to fix this
new 3e584f8 Integrated appCatalog model to GFac local and hpc monitor modules, commented out test calsses
new d856d24 adding EC2 provider changes
new fa666b3 merging
new 7b8d984 Merge remote-tracking branch 'origin/gfac_appcatalog_int' into gfac_appcatalog_int
new 755273e Merging changes
new ce1354e fixing build issues in branch
new 3eea1a3 Changed job submission and data movement protocol to their enums instead of String which will cause to NPE with null values
new a133fa8 re-arrange server and clint code to create seperate distributions. AIRAVATA-1471
new 44c72f4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d8176e8 Fixed NPE of scheduler and changed gfac-config.xml
new 38bc592 fixing NPE
new 9e6f748 Merged the changes. AIRAVATA-1471
new 95354ea Fixed NPE of security context and replaced ActualParameter objects with DataObjectType obejects
new f7c25ca Fixed AIRAVATA-1495.
new 198de99 Removed DataObjectType thift struct from experimentModel and replace it with Input and Output DataObjectType define in applicationInterfaceModel thrift file
new d7f35e1 Removed local test class
new 0b95d3b Removed old thrift model classes from repo
new f9fdf53 updating with app catalog input output objects
new 428b240 Added STdOUT and STDERR types to DataType enum
new 088e80f Merge remote-tracking branch 'origin/gfac_appcatalog_int' into gfac_appcatalog_int
new b52499e Gfac - Removed AcutalParameter objects and replace Input and Output DataObjectTypes
new a3351b7 Merged master branch
new 82127c7 OrchestratorSimpleClient- Replace DataObjectType with Input and Output DataObjectType
new 4b27ce8 Replaced DataObjectType with Input and Output DataObjectType
new f09c742 XBaya - Replaced DataObjectType with Input and OutputDataObjectType
new c383cf3 fixing issue with scp
new e541329 fixing class cast exception occured due to ActualParameter instance
new 86c2a9d fixing issue with monitoring, because topmost object is not removed when everything is empty, unwanted iteration
new b1226d5 Removed workflow server settings. AIRAVATA-1471
new f712ec1 fixing bigred2 auth error
new 8cbb2d1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 91721d4 Fixed Xbaya GUI. AIRAVATA-1510
new ffcaea3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 62f0036 adding missing job parameters at createJobDescriptor
new 4286c8c Commit. AIRAVATA-1510
new 225b674 fixing schedular class to get correct execution mode
new 0b867da fixing experiment output not set properly
new 97b384b fixing error in monitorign.
new febd0c4 fixed simple experiment run [AIRAVATA-1473]
new 5413e67 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new af73c44 fixig concurrent modification exctpio in monitoring
new f7de359 fixig concurrent modification exctpio in monitoring
new 3693892 merging gfac app catalog integration branch with master - AIRAVATA-1511
new 65ad586 merge changes of master - AIRAVATA-1511
new c36ab24 AIRAVATA-1511
new 831dbdc fixing NPE
new ce62a61 Fixed GSISSH for amber and few issues arise with create launcher sample
new dfa2f22 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d3d04cd fixing issues in SSH job submission with app catalog - AIRAVATA-1511
new afb1cde fixing issues in ssh job submission
new e1af264 Adding getAllApplicationDescriptions methods and fixing a type in model
new a40f49c fixing amber in br2
new 30798f8 fixing local job submission
new c871568 set app catalog test port to 20000
new 7a352c4 FIXED- appcatalog setter always set to null in JEC if we call with null value
new a0afbd8 removing gfac-schema from pom
new 405d31d removing gfac-config from pom and fixing build issues
new f882044 fixing ultrascan jobs with app catalog changes
new a02c575 Provide correct project name when creating amber experiment on Stampede compute resource
new c8bf7f1 Merge remote-tracking branch 'origin/master'
new 2330ad8 Class cast exception in AdvancedSCPOutputHandler
new 3eacfb8 Added create experiment methods for gromacs, expressos, lammps, nwchem, trinity, and autodock on stampede
new d3aff43 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c4f3c66 Added xbaya distribution. AIRAVATA-1471
new aee6aad Changed filtering to submission and security protocol base
new 6d7890d Merging changes from safekeeping branch to master
new 778f3da Removed unused gfac-config.xml file from repo and changed test gfac-config.xml according to the new improvement
new f847579 Merge remote-tracking branch 'origin/master'
new f348ef4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a838b66 - more testing
new 5c139f2 Set experiment output data type when launching workflow via XBaya
new b4a34fa Removed duplicate ssh username property as ansible give problem.
new be21587 Clean up the distribution creation. Now we need not to change distribution poms or assembly xml files if you add new jars to your project. GFAC distribution can be modifited easily to create different GFAC flavers. AIRAVATA-1471
new eec2000 Removed extra files and added server jar.AIRAVATA-1471
new 791001f removing existing prepand commands, append commands before updating
new e853fa2 get experiment outputs from app catalog
new e2e9d2c fixing issues in advancedInput and output handlers
new ab23ac9 br2 amber output data handling
new dc1898d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new afc05ea Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 897d765 the provider is compilable
new af13650 Added add , echo , multiply and subtract script files and add RegisterSampleData sample java class
new 195f8d7 Merge remote-tracking branch 'origin/master'
new cf18c7d Resolved compilation error comes with dc1898dfe054 commit
new 12cdde0 Commented out gfac bes, gram and hadoop dependencies from server and gfac-server distribution poms
new 4a79ee6 Fixed - LocalProvider use parameter names instead parameter values
new b305777 Fixed - Opening new workflow issues
new 7857e9a Fixed - use task input and output instead of experiment input and output in BetterGfacImpl
new 7f4faeb Added xbay-gui to default build profile and commented jar sign xbaya profiles
new d831b8f updating jglobus version
new 6f89736 To remove dependency of ncsa BouncyCastle.
new 4697904 Removed meta data and visibility fields from inputconfiguration window
new 28a235e modified provider sources to use appcatalog types
new 576c87d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ca2f23b Add an new property to inputnode keep application arugument and improve xbay gui to support that
new a61b37f Preserve argument order and application arguments
new 5d56aa7 Fixed - AIRAVATA-1542, remove metadata and app info deprecated details from input configuration dialog
new b6d9a5e Fixing AIRAVATA-1540
new f4a32fd fixed data staging issues, supporting local stageins to remote job working directory, use of delegation tokens while job runs
new 09668d3 Updated RegisterSampleData class and remove test debug lines from local provider
new 0c6301a Merge branch 'gridChem_support', this will add input order preserving and application argument support to the gfac local provider
new d35226d adding improvements to input and output data types - AIRAVATA-1544
new 6644942 working mpi example
new 5b118f8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5a1b225 Revert "Merge branch 'master' of"
new 63a561c Revert "Revert "Merge branch 'master' of"", Reverting msmemon's merge commits and revert commit of that merge commit
new bfaac64 Added missing thrift generated classes , this will fix the build issue
new db45699 Added dataType to the task details, Added LocalInHandler and GaussianHandler , updated gfac-congif.xml to run Gaussian application
new d314cdb update README, INSTALL - AIRAVATA-1370
new 158617d Fixing Release Note
new 45432ca Adding license headers
new c2ce725 Adding license headers
new 201a05e Show data type in input and output confiuration dialogs, and refactored the both code
new d6ee953 removed legacy xml dependencies and some more conflicting with bes
new 11c9f53 [maven-release-plugin] prepare release airavata-0.14
new 326c9f4 [maven-release-plugin] prepare for next development iteration
new e2cc8a4 Added GSISSJ input order preserving implementation and smaple application registeration for montex and gaussian
new a913610 Merge remote-tracking branch 'origin/master'
new 842004e adding gamess and update airavata data models
new cf7290a adding max memory to batch queue
new 9fbb426 Updaged GaussianHandler and GSISSHProvider classes to support new API improvments
new 4269997 Fixed compilation issue
new 04054a7 Integrated Tinker Monte and gaussian applications with airavata
new 557aa68 fixing data type
new c29d404 Merge remote-tracking branch 'origin/master'
new 61d0c73 Handled output inclusive and exclusive properties in gsissh provider and modified games and nwchem appliation registration code
new 99fdd58 adding prejobcommands and postjobcommands
new 7328287 Added prejOb commands and post job commands to the pbs and slurm scripts
new 4dda3f3 [maven-release-plugin] rollback the release of airavata-0.14
new c6953df fixing xbaya issues
new 7e8b48b update README
new 1817176 [maven-release-plugin] prepare release airavata-0.14
new 429d23f [maven-release-plugin] prepare for next development iteration
new 98c9a34 refactoring airavata code
new 8ff835f treating STDOUT and STDERR as outputs
new 46be455 post job commands error
new e54313c merge 0.14 branch with master
new 97ad96b adding relative path when job creation, save file uri to data transfer details
new f8b6adb changing validity type and addedToCMD to boolean
new dc22b7b adding application argument and search query to outputdata object
new 7a3f11b adding application argument of output when creating pbs script
new 8561d4f output with relative paths
new e96d446 errorneous break
new 0a85dfe fixing throwing exception when stdout is empty
new dba25a4 database script issues
new e8eef3b update fail count in monitor, post job command saving error
new 3c48771 Added new output handlers. AIRAVATA-1551
new 47ea033 making clone experiment work
new ab59a15 To fix output and stdout/error paths in job context.AIRAVATA-1551
new 12bf4c5 Added properties for job notification. AIRAVATA-1553
new ea6de37 adding getAllGatewayProfiles
new 32fff94 removing previous airavata client API - AIRAVATA-1371
new 714c204 adding RabbitMQDatacat Support Beans, to be tested
new 2654424 Revert "removing previous airavata client API - AIRAVATA-1371"
new 6e5e336 Revert "Revert "removing previous airavata client API - AIRAVATA-1371""
new 18f338c Revert "adding RabbitMQDatacat Support Beans, to be tested"
new b81daaf Fix to pass the gateway name from request. AIRAVATA-1554
new 0b70b69 To get gatewayid based on security token. AIRAVATA-1554
new cab1571 retiring ws-messenger and remove dependency of workflow tracking - AIRAVATA-1556, AIRAVATA-1557
new 42f77ed retiring workflow tracking schema - AIRAVATA-1557
new 3ad5205 fixing removing compute resource preference
new d7e2abb Added simple workflow module to the repository, defined basic APIs
new f339c2e fixing AIRAVATA-1555
new fb661cf adding credential store cpi - AIRAVATA-1560
new e32c1a9 adding SSL thrift server for credential store - AIRAVATA-1561
new 0b8dcd3 Fixed the error in SLURM script creation. AIRAVATA-1562
new 92888e5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7a6fbdb adding useremails to experiment and task models - AIRAVATA-1563
new 1ec5380 adding useremails to experiment and task models - AIRAVATA-1563
new fc2da55 minor error in post job command model
new c916087 Added email notification in PBS scripts. AIRAVATA-1553
new 4a86387 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 991babd adding email addresses when create task from cloning experiment
new b1c6824 empty experiment object set
new d448fd5 empty experiment object set
new f568594 empty experiment object set
new 7f89880 adding credential store server handler - AIRAVATA-1561
new c6fe0de implementing credential store server handler - AIRAVATA-1561
new d05cbdc Merge branch 'master' into simpleWorkflowEngine
new f70d074 stop starting credential store service by default - AIRAVATA-1561
new 09876ee stop starting credential store service by default - AIRAVATA-1561
new 30aefc4 updated distribution pom for bes
new 88d27d9 implementing passive gfac submitter using rabbbitmq
new 4ec9dc3 fixing AIRAVATA-1561
new d262e9f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e680397 test certificate credential - AIRAVATA-1561
new b338f4a Partially implemented DAG processing
new 5bd8b86 Adding Edge.java class to repo
new c90662f renamed link package to edge
new 0149c1a adding consumers to gfac without leader election
new b6bf782 wrapping up working version of queue based communication between orchestrator and gfac
new 0422094 adding rabbitMQ java client - AIRAVATA-1574
new e3ce93e Implement Airavata default parser to next iteration.
new 9445b7a Handle ouptprt of application nodes and workflowOutputNodes
new 155c3c7 reverting changes done to distribution pom - 30aefc46bedcc06516d992a1b3da196f3bf21289
new 263522a Modified Test cases
new 9fcf226 Remove workflow engine class from the module
new a486b67 adding curator leader election logic
new b622683 performance test for messaging framework - AIRAVATA-1577
new d9ae024 fixing compilation issue
new 60788ef initial version of passive job submission
new 840e627 implementing queue submission without curator
new 308291f Added Apache license header and update AiravataDefaultParser test
new 0bc98a3 Make test machine independent
new 0ae7e83 Merge branch 'master' into simpleWorkflowEngine
new 1a5daae Refactor renamed, isSatisfy method to isReady
new 20d6817 Refactored Port's isSatisfy api method to isReady
new 33d2e27 fixing AIRAVATA-1584
new 27f6f1b Added temporary pulisher to publish task status change events and outputchange events, Refactored workflow interpreter code and improved it to lauch and iterate the workflow
new 55319c9 Implemented execution logic of the workflow data model
new 8835097 Fixed AIRAVATA-1571, and refactored the code
new 6bfb956 Renamed the wrong package name
new 41ea946 Fixed AIRAVATA-1590
new 249b440 Merged queue-gfac-rabbitmq
new 32f10d1 removing stat collecting
new ffbb1b9 merging with master
new 97ff3b7 Refactor renamed RabbitMQListener class and fixed rename issue with RabbitMQStatusConsumer class
new 3504410 hard coded security protocol - AIRAVATA-1584
new 9a6eaaa Fixed the disribution and tested the SSH protocol communication to different machines. AIRAVATA-1585 AIRAVATA-1595
new 1231c01 adding support to proper acking for messages
new 93ed077 merging wth master
new c6c9354 adding LSF support to airavata
new d25441a Fixed AIRAVATA-1591 ,AIRAVATA-1592 , AIRAVATA-1593
new 67ca5b1 updated server pom: enabled bes, removed stax conflicts in the orchestrator; after this commit other providers must be tested
new 8b2a6b0 Fixed AIRAVATA-1611
new 2e2868f adding gateway id to experiment catalog - AIRAVATA-1604
new a216a73 Adding LSF to supported job managers, addressing - AIRAVATA-1600
new ed6d1af Fixing a typo in output parser name - AIRAVATA-1600
new 658e5e9 adding CRUD operations to gateway - AIRAVATA-1608, AIRAVATA-1604
new ad44956 Fixed AIRAVATA-1612, Enable to plug different workflow parser implementation through airavata-server.properties file.
new 366ada0 Added small code snippet to run load test via XBaya.
new 25cf3c9 adding getIntermediateOutput method to API
new 3df0250 Adding a resource user name to compute resource preference - AIRAVATA-1617
new f9f63a0 API Methods to manage credentials - AIRAVATA-1616
new 33b403f Stubs for credential store api methods - AIRAVATA-1616
new 050ea84 Fixing the stub build error - AIRAVATA-1616
new 672d13e gateway notion to app catalog - AIRAVATA-1605
new c66cc84 using uuid as the password - AIRAVATA-1614
new 0f2c6ff Adding gatewayId to relavent API methods to ensure multi-tentant scenarious will work - AIRAVATA-1607
new c073c6a Merge remote-tracking branch 'origin/master'
new 8be5988 Adding gatewayId to relavent API methods to ensure multi-tentant scenarious will work - AIRAVATA-1607
new b1f0b00 Updating API calls to use gatewayId - AIRAVATA-1607
new 7c5f1c8 updating CPI s to have the gateway id - AIRAVATA-1607 AIRAVATA-1608
new 71db390 Fixed AIRAVATA-1619. and removed WorkflowUtil class.
new 917adad Fixed AIRAVATA-1618, and optimized the imports.
new c69d322 pass gateway id when initialize registry - AIRAVATA-1608
new 38e7309 gateway id to cpi - AIRAVATA-1608
new a18b747 fixing compilation issue
new 66de372 Removing the stale WS Messenger - AIRAVATA-1556
new 58c58cf Reorganizing credential store to create a light weight stubs artifact - AIRAVATA-1621
new b25e0a5 Reorganizing duplicate generated classed and instead using the stubs artifact - AIRAVATA-1621
new 9d960f7 Change to GATEWAY_ID in credential store DOA
new 7c10349 adding chassisName for compute resource scheduling
new ac574c9 adding chessis number to database and test issue in CS
new e9468ca adding test class to save ssh credentials
new 52f1e75 Moving credential store client to stubs module.
new 9385c4e change persistent_data to experiment_catalog
new 8c84eee Moving credential store client to stubs module.
new 9d80cf2 Merge remote-tracking branch 'origin/master'
new 44d89ee Removed sys out from the WirterTask.
new 774b092 Fixed AIRAVATA-1620.
new 5ff650f adding lsf support with tests
new 565b5a3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 04cecb4 fixing monitoring issues with LSF
new fd557d8 fixing AIRAVATA-1626
new fcbda21 more fixed to support LSF
new 34b06cc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ad8e482 Show error message when there is no compute resources found.
new 8d3b137 introducing support of myproxy and server generated identity mechanisms, work is still under development
new 7883eb9 generated thrift files
new 7ef8800 continuation of authentication mode implementation
new 56efa8e fixing compilation isssue, bug in getAvailableAppInterfaceComputeResources(), fixing AIRAVATA-1226, AIRAVATA-1626
new 4000b82 fixing bug in clone experiment - AIRAVATA-1626
new b746118 Fixed AIRAVATA-1596
new 10c5abf Fixed AIRAVATA-1597
new c2bacf2 fixing more issues with LSF
new 13b480d fixing LSF issues
new 674db3c using login username inside gfac
new f31637e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6da7a74 fixing a bug in ssh credential registration client
new a2181e4 Simple null check
new 757e8a3 Fixing the sample for Unicore change.AIRAVATA-1596
new 990d72a fixing AIRAVATA-1630
new 9700459 Fixed new workflow interpreter termination issue.
new 48192d9 fixed typo
new 73858d1 fixing AIRAVATA-1630
new a4fb489 moved userdn part to the more dynamic userconfiguration model
new 5d7a034 Fixed AIRAVATA-1631.
new be1c6a0 Missed a condition. AIRAVATA-1631
new 5749f12 Fixing. AIRAVATA-1631
new d09957b Fixed AIRAVATA-1633.
new f708304 fixing AIRAVATA-1634
new 7d57c09 Changed according to AIRAVATA-1634 in clone fix. AIRAVATA-1631
new 73f371d fixing AIRAVATA-1638
new 48be39f merging with master
new 0db33d2 Mereged master branch
new c05d5e6 insert only if the default gateway and user does not exist
new 29a0e4b Merge branch 'master' into new-workflow-design
new d3f67fd Used user provide gateway id instead of default gateway Id
new cb6c4cc adding more fixes to worker based submission
new 2b45c6d Reade gateway Id from credential token and identify the experiment execution type
new be6aecd removed synchronized block in Orchestrator Server handler
new 5310bb4 deleting delivery token
new 3eb9163 Merge branch 'queue-gfac-rabbitmq'
new aa27ce1 changing default mode to passive
new c090519 Adding python and re-arranging the script - AIRAVATA-1641
new 97c7a73 Adding python generated code - AIRAVATA-1642
new 4ff23f4 Adding assembly plugin and package python libs - AIRAVATA-1642
new b27dc19 Adding basic sample to test Airavata Server Connection - AIRAVATA-1643
new 7d787b8 Fixed sample issue with invalid gateway id
new 5e5630d Added token field to workflow launch window to provide valid token when launching an experiment.
new 80d9df5 - added support of self generating certs if a proper ca cert and key is provided (would be good to shift to oauth2 in future for individual gateway users), the classic myproxy sequence also works - minor unicore security context api changes
new 1014cd9 Merge new-workfow-design
new 509f203 Renamed simple-workflow module to workflow and created a new workflow-core module which will keep all the core code
new 4031e50 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 220e041 Merge branch 'new-workflow-design'
new a6c483c Use default gateway Id if credential reader fail to retrieve the gateway id using token.
new f25af64 adding initial version for test framework - AIRAVATA-1652
new a8cf35f making worker queue configurable to durable and non-durable
new f5a2eac adding gateways, ssh credentials, projects and compute resources - AIRAVATA-1652
new e0df621 Create and launch sample now independent; better file output handling; some bits of us3 and juropa testing
new dbe9c8c Fixed the job name issue. AIRAVATA-1640
new 17b8740 Fixed AIRAVATA-1594 - Save workflow inputs and outputs. Renamed workflow-core artifact id to airavata-workflow-core
new aff5d92 adding app catalog related functions - AIRAVATA-1652
new d798cab fixing AIRAVATA-1567
new d892369 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7812dca experiment execution for AIRAVATA-1652
new 1f9ac84 Adding main classes - AIRAVATA-1652
new 26cf7ed fixed a bug in app catalog mysql script
new 9a0024a adding extra logs to do more testing
new ac9dc30 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 764a239 fixing gfac status updating with worker queuest
new a51a7ca Fixing rabbitmq reconnect issue
new 732da59 Fixed AIRAVATA-1647.
new fb6e3b6 Added Email based monitoring classes
new b368cb0 Merge branch 'master' into emailMonitoring
new 8feb5d0 removing unnessaray fture list
new 4d478d8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d61d33e passing options as arguments AIRAVATA-1652
new 9a34ebc Move email based monitoring to bfac-core as it introduce cyclic dependency if it was in gfac-hpc-monitor
new 28043f5 Updating Airavata to use Java 8 - AIRAVATA-1658
new 7515c46 Removing unused dependencies - AIRAVATA-1658
new cd6f1d9 Make email notification type to ALL in SLURM and abe in PBS xslt files, improved email parsers.
new 526aa77 more fixes to test framework - AIRAVATA-1652
new 97bd7a7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b110ff2 Add a property to enable and disable email base monitoring
new 9f1fa2d Added Lonestar email parser and refactored parser code
new 05bb24d adding more changes to test framework AIRAVATA-1652
new 1670050 completing initial test framework - AIRAVATA-1652
new 2265395 completing initial test framework - AIRAVATA-1652
new 95fae20 Merge branch 'master' into emailMonitoring
new 6a55b19 fixing AIRAVATA-1662
new 1d862a4 fixing AIRAVATA-1663
new 6ffc3ee Add new gfac email monitor module to gfac monitor module and Intorduced gfac-hpc-monitor module to keep all hoc-monitor code
new 5e77e4b Merge branch 'master' into emailMonitoring
new bf0fddb Added email based monitoring implementation to gsissh provider
new 66ac6b9 Modified computer resource.thrift file to support email based monitoring.
new fdb3fc9 adding more customizations to test framework - AIRAVATA-1656
new 50672a7 Fixed AIRAVATA-1665
new fc20882 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 042e25c Merge branch 'master' into emailMonitoring
new 93d4421 AIRAVATA-1666 - Added compute resource level email based monitoring check.
new f987a73 Checks for null monitor mode in ssh job submission
new 3cdea29 AIRAVATA-1667 - Modified both mysql and derby sql script files and introduced email monitor property table. Add part of new email monitor property resource implementation.
new f1d300e adding email monitor property to app catalog
new e89ba3d Email property model class
new 97d31b4 generating code to have token id in terminate - AIRAVATA-1661
new 71a94a0 code generation for AIRAVATA-1661
new 11c01c6 AIRAVATA-1667 - Resource doesn't save password to registry.
new 4f95a79 Fixed AIRAVATA-1666
new c5c83ea To fix Airavata-1661.
new a4daa52 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2dbd798 fixing out handlers not invoking issue
new 2b935a4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a773a28 fix a typo in database script
new 7f89109 fixing issue with threadpool
new be901aa fixing errors in threads
new ea88999 avoid creating duplicate taska
new 0f97741 generating code for messaging
new 395c9d3 generating code for cancel job in gfac
new c92fbd3 fixing exception handling
new 5e7d3ef Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 73c8337 Fix Airavata-1661 for job cancel
new 98f2186 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ae15740 movig to cachedTP
new 90aa639 Fixed AIRAVATA-1670 , error job notifications handle
new 2dde0d3 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1742c49 Fixeded Airavata-1661.
new 8a7913f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2710f99 Temporarily commenting integration tests to test Jenkins builds
new 4e3fde8 save detailed error when saving error details, convert testframework.properties to json - AIRAVATA-1672, AIRAVATA-1656
new e01f24f Removed all non support operations from the XBaya UI
new 49e5201 Check gateway exist before retrieve application interfaces.
new 06e4f1d Fixed typo in log message.
new 49deda5 handling error scenarios from test framework and save entire error to registry - AIRAVATA-1672, AIRAVATA-1656
new 395c790 handling error cases from test framework - AIRAVATA-1656
new bd275a9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c8a17de missing error savings - AIRAVATA-1672
new cf82465 test framework result file formating - AIRAVATA-1656
new cc0a8f9 Invoked out handle workers in failure state too.
new 5be53c7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5747ec0 Fixed - AIRAVATA-1680
new 76d4e3e configure zookeeper error logs in log4j properties - AIRAVATA-1660
new 190217b configure zookeeper error logs in log4j properties - AIRAVATA-1660
new cff0bf2 Fixed - AIRAVATA-1461
new cd9f581 Fixed - AIRAVATA-1683
new a5b7c59 Fixed - AIRAVATA-1684 with ReceivedDateTerm
new 37e0f4a Added db script modifications needed for fix AIRAVATA-1683
new 4a043be improving zk implementation
new 0f8269d fixing validation - AIRAVATA-1682
new 9cadde8 fixing AIRAVATA-1687
new 35e0af8 Fixed AIRAVATA-1686
new bbb43ff Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6409f07 fixing the recovery for SSHProvider
new ab070e1 committing changes
new 5b192c9 fixing the build
new d89f3f6 removing legacy zk code
new 4f89c67 fixing pbs script generation and update app catalog registration
new f76a4a0 adding ultrascan application to test framework
new 52a6fda Added job notify email to job detail object
new 7751220 fix issue with job detail email list set
new c22f21d identify Resource job monitor type by sender email address
new be018e4 Added Bigred2 admin email address as PBS Resource Manager Type in email monitoring.
new 73da33a Added alamo and goden
new bf0f8ef removing extra scpace when adding email addresses and test framework changes to ultrascan application
new 92442cc fixing an issue with passive mode
new 02aa95b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ccdf5c4 Added jobName as monitor id in email search in case compute resource return null for jobId
new a665aa5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 264bbeb fixing the email monitoring to use cachedthreadpool
new c1c85bb Make message unread if there any issue with message.
new 96f04f4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4f505cd Added log messages for emaill notifications runs
new a6d876e Added more log info to email based monitoring class
new 672244e fixing zk code
new b419e5b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b47e4a9 fixing issue with output handler invoation
new e8b31a3 fixing relaunching issue
new d08415a more error handling
new 8baaa0c fixing error during recovery
new 851aa62 fixing the variable name
new cb600a1 Adding searchWithPagination support for the RegistryCPI and RegistryImpl
new be997dd Merge branch 'master' of https://github.com/apache/airavata
new 7e3478e removing mistakenly commited log file
new 2f319c1 fixing zookeeper issues with max connections
new cc40cf3 Added [EJM] prefix to email based monitor logs.
new e7e23bf Update Began state to match with ACTIVE job state in SLURM email monitor parser
new 4117cbc enable disable caching from properties file
new 9f6e30e Adding more support to the registry for paginated result retrieval of project and experiment data. Renamed all *searchWithPagination methods to search* with method overloading
new 0a3d857 Changing Airavata API to support paginated result retrieval of Project and Experiment data
new c6ee5ce Adding registry script files as resources in airavata-api-server module for testing
new 7bf5fc1 Merge branch 'master' of https://github.com/apache/airavata
new 0b572c2 updating AiravataServerHandlerTest
new f0a2fde Fixed SGE Template for support email based monitoring.
new 316c788 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 19d8e49 validation queue name with trim
new ab2efea Added UGE Email parser to email monitoring
new 6bf56d3 Merge branch 'master' of https://github.com/apache/airavata
new 8ad2e03 Handled Lonestart different email sender address
new ee139ae Removed Email Parser Object creation in every request and add exit status check in UGE Email parser
new 71c83a1 Don't need to retrieve emails from email server if job monitor map is empty , this will reduce starvation between gfac instances for emails.
new 1fba5f9 add log message to print num of jobs in job monitor map
new 2527fe8 fixing NPE at recover
new e8a6a6e Added check for zookeper object null. AIRAVATA-1661
new 135607c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6e94c35 Removing use of duplicate database scripts in tests
new 464e955 Merge branch 'master' of https://github.com/apache/airavata
new e5f16f2 Added comet email to use SLURM parser.
new bcc5f58 fixing zookeeper wait with a timeout
new b90498f fixing zookeeper connection closing issues
new 478b397 Merge branch 'master' of https://github.com/apache/airavata
new 8ef2782 fixing more in out handlers
new fc1cffb fixing NPE
new 1e040e4 fixing zk client connection closing
new 6c06aaa more improvements to zk implementation
new 2f06d27 Adding more python samples - AIRAVATA-1643
new 7c1c632 Merge remote-tracking branch 'origin/master'
new 5d940d3 Merge branch 'master' of https://github.com/apache/airavata
new 8a0dd49 fixing java version on install
new 20bf020 removing deprecated ws messenger form readme
new 5cc8b43 Merge branch 'master' of https://github.com/apache/airavata
new 1e2f784 Improving Batch Queue Validations
new 742edee Fixed nullpointer with the JSDL genarator.
new 7023991 removed gfac-ec2, gfac-gram and gfac-hadoop modules from source.
new 34a8401 Script to download raabitmq
new 4819dbb refactored , submitJob and relaunch methods logic with states.
new a3487e7 Refactored GFacHandler and GFacProvider inheritance, merged Recoverable interface with its correspond normal interface.
new fd6e0a0 Simplified StandardOutReader.
new 4de74c6 Try to read input stream first time and then read until jsh channel is closed.
new e4be39e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7b8e933 keeping only the passive mode from orchestrator
new 43c313f adding token id to submit and cancel methods
new 06bf62b updating pom.xml with new developer information
new b643ea5 updating experiment status to EXECUTING when gfac act upon it
new e9a451d ack when cancelled
new 4a978d4 saving data in zookeeper when terminate
new badaa73 verify the job in remote resource after submit, if both failed then mark experiment as failed and exit.
new cdf9799 cosmetic changes to job id check loop
new d2afa76 Fixed JobDetails saving issue.
new 9a8a14b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 113b75f zookeeper clean up after status updated
new 258e06e Added monitor method to GfacProvider interface and implement monitor job method in BetterGfacImpl
new 09db4ec Fixed GfacExperimentState conflict issue.
new e0ce541 adding generated gfac internal states
new 747d766 moving code
new 6f8fa3e renaming PluginState to HandlerState
new 1b84883 fixed the enum
new a893d86 Using assembly components to modularize assembly dependencies - https://issues.apache.org/jira/browse/AIRAVATA-1697
new d076fa8 To fix AIRAVATA-1476 for unicore provider and added rabbitmq messaging.
new 483e927 validating experiment id when cancelling
new febe2f9 Removing the deprecated gfac schemas from the repo - AIRAVATA-1699
new 4f4c799 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d210872 Refactor Cancel job request and remove RPC job submitter class.
new 34cd927 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 382b6c0 Cleaning up Xbaya use of legacy LEAD code - AIRAVATA-1700
new 624dd41 removing unused workflow execution context - AIRAVATA-1699
new ea93cc1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ec9b6fe check iscancelled from registry experiment status
new 0f5ec6f Refactored code and Fixed Job statues update method in GfacUtils
new 7d391f1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 246d55b Fixed Compilation error
new 4a38f81 Remove operation node in zookeeper for each experiment.
new b96366f Save JobDetails in saveJobStatus method to fix NPE.
new a6a80d5 Fixed job name output length issue in JobId verify process.
new aa7af1b Fixed NPE throws from reInvoked Output Handler method.
new 16b58b8 Added missing break statements to recover method
new 2fe26fb error state from experiment status updater
new 563c624 Added Experiment state transition validate method to Experiment Registry
new 4737235 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6117c29 adding another status to gfac
new 43e15cb no message
new 4b048e1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c38b3b6 Intermediate commit of new modular distribution assemblies - AIRAVATA-1471
new 449eb75 Merge remote-tracking branch 'origin/master'
new c29aa94 Implemented JobSubmitted recover steps.
new 420a51a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2bf83dd Don't need to check Gfac node in zookeeper before publish Terminate request to work queue.
new 6fb6644 Fixed the file transfer issues. AIRAVATA-1476
new fea3325 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 0140ce7 cancel when provider invoked
new 0141475 cancel when provider invoked
new 8c85778 Fix Experiment never goes to Cancelled state.
new e6d66d0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6b7a84c After submit to compute resource, use JobId to verify if job id is not null.
new 5ee2559 disable update to failed and cancel experiments
new cc19eed Simplified jobStatus parsing logic with Regex matching.
new acf30c0 Handled NPE thrown by savePluginData method.
new 86a79b6 Added UGE Configuration class and rename SGE to UGE to resolve name conflicts.
new 41cb87a Edited both bfac-server and server bin-assembly.xml to add UGETemplate.xslt to bin directory.
new ae129dd Handled UGE Aborted email and log CommandExecutor command.
new 7d4da19 SGE -> UGE renamed
new 55a9346 Implemented UGE output parser to find jobStatus and JobId using regex
new 769b905 Handle empty job id issue in SLURM Output parser.
new d805482 validating node count
new 8ae827d Adding null check for message publisher before trying to publishing
new 0a3ab51 verify job in remote host before cancel operation.
new c4b8fb2 Fixed state change issue with recovery of relaunch operation.
new 1874856 handled SLURM cancelled emails.
new c11b662 Fixed Failed job cancel at abstract cluster level.
new ad41af7 adding lonestar and comet
new 7229a4a cancel job fix
new 973bf93 removing RegistrySettings classe and its usages
new 419cd6a not making experiment status as failed when cancel failed
new a8a0fce Save and Ack Cancel deliveryTags.
new 7c54180 Don't want to clean zookeeper data in experiment canceling state.
new 1066f00 Check channel is open before send ack to rabbitmq message in case of failure.
new 9f8e68b update task status to post processing when job is failed
new 0af085f when job failed, output handlers should only download standarad out and standared error
new 5c3c9bd initial version of the client sample.
new d4ccc87 create user and vhost in rabbitmq
new 111d9b5 Handle cancel reqeust fail in provider instead parse it to GfacServerHandler
new a74790a adding prefetched count
new 83feaec Fixed : ack cancel delivery tag one time, multiple acks cause to unbind consumer from queue.
new db9918f cancelling check
new c6ac2b1 cancelling check
new 7211091 Change experiment status to CANCELLED after stop the original experiment process due to cancelling request
new 86994f6 fixed compilation issue
new 14a1621 modified Airavata server side to secure the API.
new addb4be completing the POC of securing Airavata API with a secure client sample.
new b62a56a making the access token to be used configurable.
new a23a9cc Removing the legacy server vs client mode - AIRAVATA-1701
new 9f3d55b Added experiment Id to status update log messages.
new c538ebf fixing cancelled
new 94a20ab enabling localhost application from CreateLaunch
new a26c1e7 getting prefetch count from server properties
new 4e9aa00 Fixed gordon job verification issue.
new 9318831 Improved PBS job verification regex.
new 1ec0920 typo in prefetch count
new e6c774b validate cpu count
new c6081e7 UGE: qstat only show first 10 characters of the jobName, consider this limitation in UGEOutputParser regex.
new 5002df5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 915ed04 Remove Zookeeper code and dependency from Orchestrator.
new 4a06178 Integrated Apache curator with Gfac. With this fix every zookeeper call goes through CuratorFramework client.
new 957fd5f Make BetterGfacImpl singleton
new 7ebe118 updating master versions to 0.16
new 6a5ed6e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 154f008 Unifying different Experiment Search Operations
new 9f9c2e0 Updating RegistryUseCase test
new 14fe107 Update DBMigrator.java
new a1ba915 Fixed test compilation issue.
new cd5ad24 Improving the experiment search operation performance.
new 0d32c22 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5b1ee03 Removing ExperimentSummary entity and using Experiment entity for ExperimentStatus
new 7e67ca0 Adding searchExperiments methods to the Airavata API
new 7bc175f Removing Error Details from ExperimentSummary object and improving the searchExperiments method
new 8c420de Fixing duplicate search results issue.
new 482176c Adding ExperimentsSearchFields class
new b67b532 Commenting mysql dependency in airavata-jpa-registry module
new 4476dfc some improvements to experiment-catalog
new ebed378 Fixing AIRAVATA-1412
new 0c1ff51 updated the master to 0.16 Airavata, and merged the branch sprint1
new 85f613f Merge branch 'sprint1_update' into sprint1_updated
new c8a70e9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7e11e95 Merge branch 'sprint1_updated' into sprint1_update2
new 1149810 deleting an unused file.
new 512fa7e Adding wso2 maven repository to maven repositories
new 6a6657a To fix AIRAVATA-1710 error in unicore provider
new f515c35 Fixing pagination issue in worker resource
new 7ab87e5 Adding updated thrift data models (includes Security API changes)
new 22bcbb4 rename airavata-jpa-registry module to experiment-catalog
new 22a76f8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7c7bdae update test class to have empty token
new 7c95cf757 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7463558 moved all component interfaces to one place
new 8d160a7 Changed thrift descriptions directory names and code generation paths
new 82773c7 Renamed orchestrator component nested modules and artifact ids
new 7b80974 Refactored gfac sub modules, merged gfac-ssh, gfac-gsissh, gfac-local, gfac-monitor and gsissh modules and create gface-impl, removed implementation from gfac-core to gfac-impl
new 4d9ed53 To fix AIRAVATA-1711.
new 19afc7e Resolve compilation issues in gfac module after module refactoring
new 7814b55 moved all component interfaces to one place
new b58a02d Changed thrift descriptions directory names and code generation paths
new 061ea10 Renamed orchestrator component nested modules and artifact ids
new 8c4ea1f removing nested distribution modules, this will be replaced by a single module which will use all required packages defined within an assembly
new 30f9d70 Removing the unused grid-tests profile
new 33286af Resolve compilation issues in gfac module after module refactoring
new de03528 merge changes with master
new 29cd57f removed thrift generated client code from gfac-service module and move it to gfac-client module. Refactored module dependency of gfac
new 8e451b3 adding a parent distribution
new 6eaaff4 moving resources into src
new 08e3a87 Fixed test failures and artifact names.
new b4ede9c Merge moduleRefactor branch
new e34df6a Pull moduleRefactor
new ec8c620 registry refactoring
new 2835d09 Resolved ModuleRefactor merge conflicts
new 13c2e79 Removed gsissh module from tools
new 5a648a6 adding registry changes
new 093643a Merge branch 'moduleRefactor'
new 4045c09 registry refactoring changes
new 2f3da01 Refactored gfac core module classes
new bad2c1c Rename few interfaces to have generic names which self descriptive
new 8ebff86 registry refactoring and fixing usages
new b393df5 bin assembly path issues
new de84878 Remove axis2 script form distribution and move AbstractSecurityContext to context sub package
new f837919 more changes to registry refactoring
new 1ba83f1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 144bb8f Merge changes have done for release branch to master
new 63f6a53 fixing distribution and some test classes
new 80a1dd3 fixing some issues registry
new c75d406 fixing test failures
new 6c1eebe add registry-tools
new ca297e3 adding missing pom
new 3224e72 removing unneeded catalog
new 2c6620f Adding getExperimentStatistics API method
new f742ebd Renaming thrift files to follow the style guide naming convention
new 314fa63 removing duplicate dependency
new 6b1f4bd Merge branch 'master' of https://github.com/apache/airavata
new 068c18b Replaced hyphens with underscores for thrift file names
new a5cb91f Updating Airavata to use Thrift version 0.9.2 - AIRAVATA-1707
new 8d16d0e moved commons-utils to commons module
new 5a6b647 Refactor commons exceptions
new 9500724 Simplifying data models in preparation for a stable 1.0 release - AIRAVATA-1014
new 8a6b891 Adding application interface id
new 8535ff1 Refactored GfacServerHandler initialization, changed GFac interface , added GfacImpl
new ce04fb9 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2654de0 Implemented gfac worker
new be5c037 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new debeae0 Refactored airavata-server.properties file.
new e76851d Updated thrift model structure.
new fd26c2b added job data model
new c404883 Fixed thrift cyclic reference issue.
new 51fa27b generated new data model classes.
new 7873292 Fixed compilation issue of AiravataServerHandler and comment out Airavata Experiment updater.
new 8a0e6ce Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 102fb04 added yam config file and parsers.
new c8bb991 Added missing properties to ProcessModel and thrift gen
new a90734a added Airavata.java missgin commit after thrift gen
new 62ad1c2 Modified ProcessModel thrift file
new 59d2f25 Added TaskContext and updated ProcessContext
new 0924a6e Added SSHEnvironmentSetupTask
new b00f20f fixing some compilation issues
new 5264b39 adding deployement id and fixing some issues with new models
new 869df7e registry related compilation issues
new e662207 Added Factory , HPCRemoteCluster , SSHUtils and SCPFileTransferTask classes
new cb4b40c Added HPCRemoteCluster implementation logic
new 9226453 Clean gfac-core moduel by deleling deprecated classes
new d9b2df0 Removed gsi related code
new a2b6bdf updated process context and create job descriptor
new 754bc5c Updated email based monitoring to work with ProcessContext
new d05c0a1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2bb805a job submission task impl
new e2235af Added Scp input and output data staging tasks
new f6d34cc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new f715697 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 709eab9 Changing the experiment summary model
new 5d10a05 Added taskchain creation logic and deleted BetterGfacimpl
new ae41a3a Fixed AiravaraZKUtils compilation issues
new 367ddca Create modified zookeeper data structure for experiment using curator
new 749ad93 procees context changes
new ac3be7a Handled TerminatTask and send ack to rabbitMQ
new 2d9ea1f ssh job submission task impl
new cc4286b Fixed compilation issues upto bfac-core modes , fixed tests upto registry-core. Generated thrift 0.9.2 classes for gfac and orchestrator.
new a6c7a1f Resolve merge confilict, used SeverSetting methods instead of constant to get settings
new a1cffdb adding local job submission task
new f366c38 Changing the registry model and resource packages to comply with the new data models
new c3b4b06 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a5039dc updating the experiment catalog db scripts
new 3a00366 modifying the data models to contain all the statuses and errors
new 066030b minor modifications for the experiment registry model and resources layer
new 21de9e0 fixing registry test cases compilation issues
new cb5d3ae Fixing minor issues and fixing the registry test cases
new 7ca8104 fixing add methods in experiment registry class
new 1968ff4 Fixing Update CPI methods in the experiment registry
new bce94ae Fixing get and search CPI methods in the experiment registry class
new fb30f5d Removing application id field from experiment table
new bf7db06 Fixing getIds CPI methods in experiment registry
new 11a208b Fixing remove CPI methods in experiment registry
new 99808c5 Fixing isExists CPI methods in experiment registry
new f9032d4 ProcessId, TaskId, ErrorId, StatusId are unique. So can be retrieved directly without the parent Id
new 8d6ba82 Fixing worker resource
new 65afe6f Fixing compilation issues in registry-core module
new 0a90a40 Adding TaskResource test class, fixing compilation issues in other test classes
new c6cfa32 Changing the reason field in status table to CLOB(derby) and LONGTEXT(mysql)
new 4ee4b1a compilation issue in AiravataServerHandler
new 993f29a Adding gatewayId to experiment model
new 56d132d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9ee0df7 changing GATEWAY_EXECUTION_ID to GATEWAY_ID where appropriate
new aec8f41 messaging data models
new 0dfd5a4 updating experiment model and experiment summary model
new ed63a40 Adding taskId to JobModel
new 9f2c086 adding host id for user configuration
new e5d861e messaging classes changes and fixing some compliation issues
new ec1ba5a Adding job data model to the registry
new 726370b Added part of Process context population logic
new 013e8c0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 144c1d8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a2dce4f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new df3fbe6 fixing compilation issues
new ab32233 fixing build issues
new 67a467d Added tarLongFileMode configuration and set it to posix mode.to fix build issue with distribution
new 996c79d Fixed compilation issue with clean build
new 4b899ba Use JobManagerCommands provided by user to build JobConfiguration functions
new 79d0135 Added new task states to identify task life cycle, this will help to decide recovery status
new adab9dd Remove previous changes to task state and added to process states
new a393b735 implemented getProcessType(pc) method in GFacWorker
new 636a733 orchestrator level changes
new aa2fab5 Changing the unique key of the JobModel
new f200d50 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ed5a172 orchestrator cpi and gfac cpi changes to adapt with process
new dce0271 Updating fields in process model in registry
new 6caf478 Finishing some of the todo's in ExperimentRegistry.java
new 455b435 added binary subTaskModel to keep task specific data models
new 7f4f182 Changed registry code to work with subTaskModel thrift binary parameter, implement scp data staging task to work with DataStagingTaskModel
new 2c94277 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 525e9e4 Use jobmanager commands in slurm job configuraiton
new 20db90f orchestrator changes
new 80589ba clean up code in orchestrator
new f1d49fb issues with experiment catalog mysql script
new aecf794 correct class paths at airavata-server.properties
new 48e23d9 removed state transition validation metode call
new 953feec Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2dee81b Fixing experiment catalog warnings
new cc79236 set default experiment id from model
new 624b5c6 Added default id to experiment id and project id. updated CreateLauncherExperiment class
new 1d27a9c Resolved merge conflicts
new 82e60f3 fixing NPEs at registry level
new 343ea0a Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new debde7a Fixed compilation issue with previous commit
new db94c55 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d4ec47e fix compilation issue
new b5b522b missing gateway id and add create process method at orchestrator
new 1bc3ce8 Fixing NPEs at registry level
new 51befd7 Populate process context before access it
new 25a3895 Added compute resource id to process model and rename launchExperiment method to launchProcess
new 2346699 Added authentication info
new e105f94 fixed server setting reading issue
new ab0bf86 merging the implementation carried on sprint1_update2 with the updated airavata master
new d88488a Fixed JSch initialization error with regect HostKey
new b7cee3e added gfac config yaml file to distribution and removed gfac config xml file
new e060b47 configuration lazy loading
new c4c03f3 Fixed NPE from configuration loading
new eaf941a Fixed yaml configuration parsing issues
new c857f82 Set taskId to task model and return taskId
new 8225ab5 Implemented basic task execution steps
new 1f09dc2 Application deployment id is not get saved with process
new 9648042 Completed process context populate function
new 5413826 set status update time
new aa86a7e Added status publisher to process context
new e0aa717 fixed amqp publisher issues
new 01d46f4 Added missing properties of registry save and get operations
new 551c378 Moved experiment status publisher code from inner class to base class
new abc42f6 Set jobModel properties
new cce7be7 Fixed xslt namespace issue
new 706edf8 Registered job management commands with resource. Fixed issues with Slurm output parser
new 4c7dcc0 Fixed registry issues with input data object and update runProcessOutflow method
new 4568832 thirft generation issue
new dc52449 changing few API methods to adhere to security solution.
new e0941f4 changed createProject method and added internal private method for isGatewayExist, to avoid chained API calls.
new e290cfe Fixed master branch to job submission with local file.
new b7e914e Send acknowledgement to processed processes, Handle task status after execute each task and handle failed scenarios.
new 4fae741 adding security validation on API method calls through interception using the Guice AOP framework.
new b515bee Merge branch 'sprint3_pr2' into sprint4_pr1
new 283e700 finished changing the API methods.
new 4579e1e Fix generate-thrift-stubs.sh to auto-find thrift exec
new 57164c7 Generated thrift php code for master
new 7be309d fixed all compilation errors in the java client samples after the API changes.
new 43fd3d7 Merge branch 'sprint4_pr1' into sprint4_pr2
new 7211c2f renamed projectID to projectId in resource
new 796fc3d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata into pr23
new 075e390 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata into pr22
new 1f7b55d fixing compiling errors in tests.
new 44fb3b1 updating the experiment statistics thrift model
new 67839c0 updating thrift generated files
new 6ec2a39 Added identity context to store user identity info in thread local.
new 7ef8368 adding some missing files from previous commit.
new 86eac5d Added AdvancedSCPDataStageTask for both input and output data staging with remote client
new b103e6f Added AdvancedSCPDataStageTask configuration to gfac-config.yaml
new 9c02f24 adding XACML based authorization for API calls.
new 7ae9cc3 Corrected scpTo interface method arguments order
new 673fbf3 Added processId to intermediate file transfer directory name
new 1ef5bc3 Modified advanced scp task properties names
new d3ac7ce adding XACML based fine grained authorization on API calls.
new 4226a2d Updated the secure-client sample to showcase the XACML based authorization on API calls and fixed some issues found when running the sample.
new 2e815ec Merge branch 'sprint5_pr1' of https://github.com/hasinitg/airavata
new c3174f2 removing redundant meta-inf folder
new 64a49b9 Adding enable/disable compute resource functionality to Airavata master
new 50e04f1 fixing test failures in AiravataServerHandlerTest
new 053bb9f fixing gatewayId not set for ExperimentSummaryModel
new bd97f80 Adding missing executionId field to ExperimentSummary model
new dc61c67 removing non paginated versions of API methods for project and experiment retrieval, from Airavata API
new eb4a737 adding Authz token as a parameter for Airavata credential store API methods
new f903d60 Update experiment status according to the process status changes
new a68eb18 Show most recent experiment state to client
new 0fbb6a8 user correct version class
new 51332d3 Fixed compilation issue
new c365260 updated the default-xacml-policy with a new rule for admin-read-only role, finished identifying including all admin methods in the policy and updated the sample client to demonstrate the latest updates to the authorization policy.
new 59f4acd added PAP client in Airavata Server, which publishes and enables the default XACML authorization policy in the XACML authorization server, at the airavata server startup - if the security is enabled.
new 4f6e8c5 HPCRemoteCluster throw exceptions with message and original exception
new 2777476 Adding the Authorization caching implementation. This completes the security solution implementation in the Airavata source code.
new f080ac2 Completion of the security solution in Airavata - adding some missing files from the previous commit and fixing issues found while testing.
new 36922c9 Re-created the pull request with conflicts with the master resolved.
new 9224359 Fixing AIRAVATA-1797 , process redelivery handling
new decad8c Added processId to job model
new bf56b43 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b98f659 Save jobModel with processId and recovery in monitoring state
new 1de2228 Fixed process recovery, fixed job status update and retrieval issues.
new e4f149a adding credential store tables back to sql script
new c8b7bb1 integrate credential store with scp handlers
new 4ba83cc adding credential store changes to 0.16 - AIRAVATA-1795
new 3d3999a fixing test failures in the build
new fdcf2c9 read intermediat data dir path from airavata properties file
new 1fbef21 Fixed output data staging issues.
new 64b7842 adding missing entity manager close statements
new 9534a81 initial fork-ssh implementation
new 869a625 NPE check at yamlConfiguration
new 2b1c87f Fixed SSH Fork job submission issues.
new 4d70d3c updating bin assembly
new 1f065a3 fixing AIRAVATA-1808
new 22d9b82 fixing getExperimentStatistics issue in registry
new 555b0ad fixing getExperimentStatistics issue in registry
new dded7ac Merging TLS code into master branch - AIRAVATA-1800
new 99abcaf Updage apiserver property constants to match with airavata-server.properties file configurations
new d8761f0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 284ce42 adding addSSHForkJobSubmissionDetails API method
new 114fa73 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1be29cb updating to get the login user name
new c7fb728 Moved airavata.log file to $AIRAVATA_HOME/logs directory and redirect stdout and stderr to /dev/null in daemon mode instead of airavata-server.out
new 55aa6df Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6938f90 fixing priority order logic and NPE in monitor - AIRAVATA-1820
new 6623967 Implemented process cancel, AIRAVATA-1798
new c292fe6 removing the getAPIVersion method from Airavata API
new 75c4cf4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d11dda1 removing the getAPIVersion method from Airavata API
new 0fec594 fixed test failures
new 3580a96 fixed test failures
new 1ea272a fixed test failures
new 42cd60d update outputs to database
new 420a031 fixing error when getting tasks
new e0483f3 Experiment cancel request, Orchestrator side implementation and refactored zookeeper node paths. AIRAVATA-1798
new be9af52 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a8eff3e Removed malformed java class
new 2640e89 Readded ZkConstants.java class to repo
new 3a2d694 removing the file to address a git issue
new 47f161b Merge remote-tracking branch 'origin/master'
new 26ef3e4 Adding missing constant variables
new 640e1e3 Fixed zookeeper path issue with delivery tag acknowledgement
new c46e21d adding stdout, stderr and exit code for job model
new 60e657d Added JobSubmissionOutput pojo class to keep output of jobsubmission command with jobId
new 39a0365 check unclosed entity managers
new 12a4800 Fixed cancel zookeeper node path issue
new 2c4044c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9e53560 Job stdout and stderr are not saved when there is a stderr msg
new dad1204 update outputs to database
new 4ba16d6 fixing error when getting tasks
new e1356b7 Experiment cancel request, Orchestrator side implementation and refactored zookeeper node paths. AIRAVATA-1798
new 99c07d7 changing the default xacml policy role names
new 8ba6817 Removed malformed java class
new 43628ad Readded ZkConstants.java class to repo
new 1675d74 Adding missing constant variables
new 0cb9f31 Fixed zookeeper path issue with delivery tag acknowledgement
new 88afef1 adding stdout, stderr and exit code for job model
new 840ae1a Added JobSubmissionOutput pojo class to keep output of jobsubmission command with jobId
new 4e57f5b check unclosed entity managers
new 21c1cdb Fixed cancel zookeeper node path issue
new 87b72f9 Job stdout and stderr are not saved when there is a stderr msg
new c139ece adding Authz Token to getAPIVersion method
new bea823b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 02f697f adding idp.scigap.org certificate to security manager client_truststore.jks
new 28b8457 adding missing gatewayRegistry initialization
new bb47856 Merge remote-tracking branch 'origin/master'
new 940f117 Changing stdout and stderr to sentense case
new 342065e Adding the missing table annotaion
new 5b1259c unifying the column names
new 07e93be Removing the git merge files
new 3f890f9 Adding getJobDetails implementation based on new models.
new 26f1039 saving errors
new b9015cd Adding getJobStatus implementation based on new models.
new 4e558e1 save job model when job id is not equal to null
new bd94e0d fixing NPE
new d631596 set error id
new b86393e fixing bugs in process error saving
new 4fa1242 fixing more issues with saving error details
new ddc76d6 Depcreating unused credential store web-app - AIRAVATA-1829
new ab71e6c Create temp script file in local data dir instead of AIRAVATA_HOME/bin dir
new b0c793f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 95cc3c4 Save complete and queue job status in email job monitor
new 84c1ae5 Moved temp job sumission script to process local data directory
new 369b353 Fixed typo
new dec07e4 fixing saving duplicate statuses
new 8ea1f0a set status id when retrieving jpa resource object
new 7ad88f7 Fixed packet corrupt issue with jsch by creating new session if previous one is not in connected state. Increased jobId verification call by 10, trim job command before use
new 7c498d0 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d44ef59 Added STARTED state to process and changed code accordingly
new d2b176c saving stdout and stderr
new 828e503 Fixed issues with recovery messages
new 5256d97 lower handling period
new 5568da3 remove handover waiting period
new 0d83737 add cd workingdir to job submission command
new b2f86f6 update process model with outputs
new b1fd3a0 fixing issues with PBS parser
new a65c01e job submitter command for resources
new c87eb42 fixing NPE s in recovery and process state update when output staging fail
new c86e550 Move data staging task to failed if staging file name is null
new 3d0dd11 fixing NPE at AdvancedSCPHandler
new 719d1a7 make process fail if task fails
new 270ff23 Check output or input value is valid before do actual file staging
new e2132b6 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 303630d fixing some fixmes
new ea0fb52 fixing possible JPA issues with entity manager
new af8a84c Fixec email monitoring issue
new 8139a8d Fixed merge conflict
new ad95ca4 Fixed email monitoring issues
new 1302c30 Improved status changed logs
new 8b5b886 fixing test suite to match with new data model changes
new 9ce24a5 changing integration tests to work with new data models
new 44e5ed1 Fixed issues with experiment cancel
new ba8538d Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new d6b735b test framework to work with master
new 28ccb9f set process status to processcontext in cancel operation
new d59c3d7 SendAck and remove process context if process is interrupted by cancel.
new 7d00027 Implement job delete on cancel request
new dbb1a0f trigger output flow on cancel ,it will move to process to cancel
new 40a4dae Handle cancel job operation in Queue state
new 690a019 Move job status to cancel in job cancel by gfac engine
new 8191574 Before cancel get the job status and then cancel if status is valid
new d8cbbb1 JPA issues and enabling gordon mpi jobs
new 9b1d836 Merge remote-tracking branch 'origin/master'
new 40ffc3b disable caching for app catalog and enable shared caching for experiment catalog
new c119db5 app catalog changes
new 50fabc3 Adding data movement preferences
new 07da736 Merge remote-tracking branch 'origin/master'
new d84783d data storage preference related changes to app catalog
new 7cecac8 Check ouptutName for null while saving processoutput to database
new a2823bc Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3216381 fixing jpa issue
new d862341 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new b3acdc4 commit missing generated file
new 83d1dfd added a log to check the orchestrator status consumer events
new 8f5997e fixing jpa issue
new 232bcb2 commit missing generated file
new 43c0ac5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 5b4cfc9 jpa issues
new e3ec7fe Create only one EntityManageFactor in runtime
new a0dc590 experiment created status update time
new 4cf30ee experiment created status update time
new 25b8522 Updated JSch jar to latest 0.1.50 -> 0.1.53
new bb43bfd fixing JPA issues
new dea8392 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c6869bc Added jsch 0.1.53 to distribution pom.xml
new a045061 Fixed duplicate job submission in recovery if job submission task failed to complete task
new 0665ee4 Get latest status if status has same update time
new 9fcd441 Local data copy if both source and destination are same and username aslso the same
new 4d07c01 Removed unused Task implementaions
new 808ff55 Set sub task mode destination and source with correct URI string
new 7275b3d adding static working dir
new ae20875 set working directory according to staticWorkingdir
new 625cbfd fixed issue with rsync overs ssh
new bd65714 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 638d7f7 Fixed 3rd party file transfer , AIRAVATA-1851
new 1b6dffe Refactored 3rd party scp code
new 302a58e fixing static-working-dir not storing issue
new 51ed550 Merge remote-tracking branch 'origin/master'
new ec75efb rabbitmq channel closed issue
new e66c52b get rid of token id from launch experiment method and use token from compute resource preference
new c558597 changing method name and adding cs token at the gateway profile level
new 07adb3b if resource specific token not specified use gateway profile token
new 6b06c4e Added EnvironmentSetupTaskModel to task model
new 6293069 generated thrift classes for tasks and orchestrator
new cb21871 add envSetup sub model
new af29522 Adding Task model changes
new 930a222 Adding thrift model changes
new 4db5d4f adding delete experiment to Airavata API
new c5778f4 adding CCM and CRAY_MPI for gausian
new 14b7bcf adding task creation at orchestrartor level
new 24b83d8 Merge branch 'orchestratorTaskBreakdown' of https://git-wip-us.apache.org/repos/asf/airavata into orchestratorTaskBreakdown
new 10d593c AutoScheduling gfac side changes
new 41b3700 Set Job submission protocol and monitoring mode to jobsubmission task model
new 9a99ad4 fixing compilation issues
new f532a9d Added max wall time to Job submission task
new e7cbd9f Saved taskDag in process model and added monitor task after job submissiontask
new 9e3d84b Use walltime provided by job submission task model if available
new ae19d7c parse taskDag string and create taskList
new 4293dc4 fixing AIRAVATA-1836
new 533faee adding resource host id to the experiment summary model
new 72366a9 increasing the size of command to 1000 chars in POSTJOB_COMMAND
new 496eff4 adding delete experiment to Airavata API
new 84bf621 adding CCM and CRAY_MPI for gausian
new c3dd6f0 fixing AIRAVATA-1836
new 83c7e0d adding resource host id to the experiment summary model
new bfa0afb undoing the previous commit
new 9057115 generated thrift classes for tasks and orchestrator
new 3398ec1 merge with master
new 4d9973e merge with master
new 05da530 adding output data staging task
new a1d999c increasing description lengths in App Interface and Module
new a2cd71e adding order DESC on creation time when retrieving experiment statistics
new 69c268a compute resource id is not set when creating process model
new d071d8e fixing task type set wrongly
new 80ac14c get remote data location till we have data storage preferences saved
new 88a611d output data staging task
new f4c6424 output data location
new 83592fb set input data object and output data object
new 53e3d4c make task-dag as CLOB
new 138c994 fixing input staging and output staging task creation
new 30a9184 adding order to pre,post,env,module ld commands
new 4cd7738 commenting the enhancer plugin
new 6c43cc1 changing db field name for order variable
new 1f9a39c adding order field to CommandObject thrift model
new 426b015 adding CommandObject class
new 72fb57b Saved correct task status in correct place in order to fix recovery issues
new b57a501 Completed process recovery
new 44ac0a2 adding PROJECT_ID to experiment search fields enum
new 5748db7 fixing registry bug
new 4db026e fixing wrong job status pick
new d96f35a fixing build errors
new 3de33ac adding conditions to PBS script for BR2
new ed4637c adding lammps br2
new e61cb8b adding gateway profile when server starts
new b442e0c changing primary key of job model and job status
new b001b18 removing process id from job status
new 6fc864e validation removed when auto scheduling set
new 2d6ee02 validating and update process model with max walltime
new d139f69 Fixed issue with input destination construction
new 85885d9 Merge branch 'orchestratorTaskBreakdown' of https://git-wip-us.apache.org/repos/asf/airavata into orchestratorTaskBreakdown
new ef332fc merge task breakdown branch with master
new be08320 Fixed bug in max wall time setting
new 98f077e Moved job model to taskContext from Processcontext
new 5eb3c26 Revert "Moved job model to taskContext from Processcontext"
new 8ce513c adding data storage host id to gateway profile
new b4e3c33 adding output streaming to app catalog
new 687d812 check monitor mode before create monitoring task
new 85fb6b6 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 140d9bd Fixed issues with SSH Fork
new 08cdad2 Deleted unused classes
new c62f74a Added LocalRemoteCluster implementation and LocalCommandOutput reader
new dc1be31 Added Local batch job submission support and renamed task implementtions to have generic names
new f070531 Change comment in gfac-config to match new class renamings
new eb425a5 Move Email based monitor to quite mode if no jobs in monitor map
new 2df93cc Added LOCAL_FROK enum to jobsubmission protocols
new b00b8b2 Return correct Remote cluster for LOCAL_FORK jobsubmission
new dd32d06 initial stage changes on data streaming
new 832b146 Use datamovement remote cluster in datamovement tasks
new 091fcdc Adding data storage model inline with compute resource models
new 5b9a48d Merge remote-tracking branch 'origin/develop' into develop
new 37e94a0 data streaming task
new 539fba4 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new c96f66b Using the tables from compute resoueces
new cbb4c74 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 5277ec4 adding generated code for data storage resource
new a9520e0 adding task type for intermediate outputs
new 7b1888f Fixed issues with streaming datamodel
new 69ecb68 moved stream outptu logic after jobsubmission
new 30d230c Fixed NPE from output data streaming logic
new 6aaea39 fixed taskcontext issue
new b27fb33 generated java models
new 47b0700 generating code for all
new f1014d5 adding php stubs for app catalog and data models
new f6d9651 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 0a0f5ba generated php for storage resource
new e2799d4 adding api methods for storage resources
new 96687a6 adding empty implementations to fix the build
new a6de539 adding implimenttaions for storage resource
new ee33072 adding getDetailedExperimentTree method
new 4f7af6a adding api changes to get detailed experiment tree
new ef5756d fixing compilation failure
new c116140 adding missing files
new 13b50f7 adding data storage interfaces
new e25f6fb adding models
new 77841a4 fixing wrong column name
new 4c0978b adding data storage interface
new ca89eae moving data movement structs to common thrift file
new 9943dbf set process cancel property when cancel watcher triger
new 9e4dccf Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new bb5be4b Only allow terminate operation for running experiments.
new 0de9433 adding storageId to experiment and process
new 5e636cb using storage preferences and resources in gfac
new 42f071c make passphrase as optional
new c135fbf updating libraries
new 497178d Fixed issues with cancel experiment operation
new a6b1785 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 7664336 removing host name from GF
new 3d16cbc Fixed consumer unbind issue with cancel operation and Complete cancel operation support for new changes
new 086fbba Comment out StorageResourceDescription configuration set steps as it throw exception, need to fix this
new fbc558d fixing NPE s in job status method
new 9bfdc52 adding data manager code to develop branch
new 6242aca making replica locations a separate entity
new 0d9a612 credential store related changes, BES changes
new 9bf53d2 adding local/scp data transfer capability to data manager
new 5870ed4 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new bd1cc2f resource can have multiple data files
new 242a403 fixing test failures
new fc277b0 Merge develop branch to master and regernerated all thrift source files
new 62aee20 adding gatewayID to user table
new 777af19 fixing test failures
new cea3e00 fixing syntax error
new 451a7db fixing syntax error
new f3ef897 fixing syntax error
new 4dd4482 fixing syntax error
new e147346 fixing test failures
new c46d5dc adding gateway resource profile when creating calling addGateway()
new 17d1b4f Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6a9a125 Adding getkeys by gateway api methods - AIRAVATA-1874
new 72dee68 Merge remote-tracking branch 'origin/master'
new e52b5b6 Adding getkeys by gateway api methods - AIRAVATA-1874
new e32f941 adding serial hash
new e8adfe1 fixing issues with gateway registering and credential store token retrieving
new 52ccf87 BESProvider code
new c1989e7 fixing issues with Credential object
new 61201b1 adding delete sshcredential method
new ed3d892 adding metadata support for resources
new 61fa8b5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 7f77750 adding replica catalog methods to the API
new 74973e9 changing the default key size to 2048
new 87df389 adding the missing ReplicaLocationCategory and ReplicaPersistentType generated model classes
new a933ba9 adding data movements when retrieving data storage resources
new 080f7ae adding missing files
new a30e5ea Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 55a1053 fixing storage resource data movement interface issues
new 305bc04 fixing creation time and modified time issue
new d3a5a5e adding gatewayId to the replica catalog
new 94f9af2 fixing issues with storage resource
new 32274f5 fixing test failure
new 7a0c97a moved stream outptu logic after jobsubmission
new a5ae2f2 Fixed NPE from output data streaming logic
new f28ea2a fixed taskcontext issue
new fda09ef generating code for all
new 3912e28 adding implimenttaions for storage resource
new 7412c9a merging with remote master
new 6c78a0c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9709417 fixing compilation failure
new b8a0335 fixing compilation failure
new 7277498 adding priority order for storage interface
new 156976b Modified slurm parser regex patern to match new slurm header and fixed bug in email monitor
new 150aa80 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bd457c2 Read login user name from gateway computer resouce preferences
new 8f820e5 fixing bug with storage preference saving
new f1c4c97 use compute resource preference and storeage preference instead of property file to read ssh keys and username
new c09cc86 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 89d879e Handle empty credential token
new 0a2b24c Fixed npe with credential token
new 9ef67cd Throw a gfac exception if storage preference is not available
new 6c5e995 Organizing thrift files into directories - AIRAVATA-1882
new 0dc7e84 AIRAVATA-1857 fixing project not updating issue
new 098c230 making cosmetic changes to the data manager module
new 60295a5 adding add gateway docs
new 7de199d Adding docs for update
new 501f30b Minor changes to existing API method descriptions
new ee1d26c Minor changes to existing API method descriptions
new 8eb545e Adding descriptions to thirft API methods
new 50cdfce Adding descriptions to thirft API methods
new a059fbb Adding descriptions to thirft API methods
new ae5dab4 changing the replica catalog data model
new 77a7e77 adding data storage interface
new 1f03378 moving data movement structs to common thrift file
new b9baeeb using storage preferences and resources in gfac
new 2d35514 .DS_Store banished!
new 13667e7 adding thrift generate files
new 5d80c91 adding thrift generated files
new d3d5c97 adding the initial version of the data catalog
new 387a8f6 updating thrift generated files
new 15d8293 integrating data manager with data catalog
new e02286b trying thrift 0.93 as discussed in - AIRAVATA-1883
new 81b5485 fixing merge issues
new 20f19e8 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new a513dcd Updating to thrift 0.93 as discussed in - AIRAVATA-1883
new 7ea88a2 Adding descriptions to thirft API methods
new 9462bd1 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4c8d396 Adding descriptions to thirft API methods
new d898724 Adding descriptions to thirft API methods
new 648a0cb Adding descriptions to thirft API methods
new 3aa2e09 Adding descriptions to thirft API methods - Experiment related methods
new 389268f Adding descriptions to app catalog thirft API methods
new efa66f9 Adding descriptions to app catalog thirft API methods
new 80d2027 Tests are failing with new thrift generated code, need to fix. Committing with build wokring without tetss
new 5d0bee5 fixing some of the test failures
new 36da4ee changes to the replicaLocation data model
new 6572a82 adding data mover code to data manager
new 1837eea fixing some date issues
new fd62b23 changing the mysql script
new 3d5bf9e changes to the validUntil time
new ee8a15e fixing test failure
new 7420187 changing the order of groupId
new 52f18ba reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883
new f4aafbf reverting the server version as well
new b490671 removing duplicate copy of data models
new 679771b removing stale clients module
new 3f0d74a fixing time issue
new 75109b6 fail the experiment when storage resources are not set
new 798bbf0 fixing ID match issue
new de9fe01 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new e3a183e fixing bugs in data manager
new d8cb965 fixing JSch Issue
new 55f8e25 fixing session connect issue
new 5c6899a disabling strict host checking in data-manager
new 3922601 fixing destination path issues
new 27383f1 SCP data copying working in data manager module
new f3fa0aa showing replica count in the DataManager Sample
new 9ba3f03 adding some log messages for airavata API
new ff2b729 copy resource with specifying source replicaId
new 60f479e adding copy data replica to the airavata API
new b161ec4 status update time issues
new da42a96 status update time issues
new 6e7ce92 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 9559649 changing CPI thrift version also to 0.9.3
new ea0cf5b fixing build failure
new a4b13a3 fixing NPE at sort method
new 3a8e117 fixing build failure
new 8afbcbf Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 47949d3 fixing credential delete bug
new 18a4c31 Handle job cancel with queued jobs
new f460dba Adding support to generate gateway client credentials
new b76af43 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 3d83432 adding clientKey and clientSecret to the AuthzToken object
new b7f7fd3 removing gateway credential API methods from the API
new 47ae5b3 making access_token optional field
new 5afc8cf generating thrift files
new 4a84e86 retrieving latest status
new c62f64a Fixed bug in email based monitor task context status update
new 2d8e350 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 6d09915 fixing error status retrieving
new c0ebe04 updating database scripts to have updated time with current timestamp
new 7121dd7 added log info messages to API server handler
new d2d72e5 selecting distinct projects
new 7523c1e Moved job status to failed if job submission command returns non zero exit code
new 6751a37 merging with remote master
new 6efba7c when checking user exists should check with user's gateway id
new f715026 when checking user exists should check with user's gateway id
new f9b0d2e Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4286bf7 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new ebf67da added log info messages to API server handler
new 2762670 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 4409f99 Fixed jobId null issue
new bedf91c Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new fde02b8 removing user reference in Project JPA model
new 8851582 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 1d9eaf8 fixing bug in sql script
new 5e4eb57 fixing bug in sql script
new 94629e1 fixing bug in sql script
new fc3f979 fixing bug in sql script
new 4dc6588 adding log info messages to airavata API
new bd77541 adding experimentDataDir to user configuration data
new 531cbdf Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 2fe5278 using experiment data directory when copying output data
new 5ce750d Fixed AIRAVATA-1888
new 98fc3f5 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new c22a73d adding missing setExperimentDataDir line
new d959615 Merge remote-tracking branch 'origin/master'
new 51ba071 tasks are created in Orchestrator. So changing the orchestrator
new 0b75afd fixing wrong remoteOutputDir issue
new 6d338d0 Fixing issues with cancelation with recovery
new 545e753 adding possible fix to same update time
new 4792eac Fixed edge case issues with cancel & recovery
new 843940f Idetify job submission failures using output parsers
new c4861b0 storage resource never set when populating process context
new cae7925 Fixed email match issue with lonestar resource
new 494857a update timestamp to miliseconds
new da4ba5b relative paths does not work for lonestart
new e43b6d9 adding full path for stdout and stderr
new 7c935e7 adding stdout to error message
new 0664736 updated process status to cancelling with cron job cancelling task
new 1a30d7f fixing status issue for experiment
new 113490e adding clone application interface function to API
new 0c51c7a fixing AIRAVATA-1416
new f1e1679 fixing concurrent access issue at registry level
new cda9014 Adding API method descriptions to App Catalog Airavata Thrift APIs
new 70358df Adding API method descriptions to App Catalog Airavata Thrift APIs
new 101c8d4 Adding API method descriptions to App Catalog Airavata Thrift APIs
new 20fe7b4 publishing experiment statuses
new 8e421f4 Merge remote-tracking branch 'origin/develop' into develop
new ea33800 Adding API method descriptions to App Catalog Airavata Thrift APIs
new 9ce83af Adding API method descriptions to App Catalog Airavata Thrift APIs
new d527fc5 fixing AIRAVATA-1852
new d79055a set correct gateway id
new 462843a ignoring empty output files when output staging
new e2b2951 parsing job output for lonestar
new fa4c187 validate job submission output for lonestar
new 819c5e2 throwing experiment not found exception instead of system exception
new b5d568d set paths from storage resource before setting the destination path
new b65079a Fixed some compilation issues with workflow-core model
new 1ec4efb Added workflow data models
new 97f4ba9 Added generated thrift files
new 09be4d9 Added application name and applicatoin id to NodeModel struct
new 494e0d7 Added generated thrift file
new 9859af3 Changed dag classes to work with thrift workflow data models
new c451723 adding workflow database scripts
new 72a6f6a adding model classes for workflow models
new 225f462 Removed old xbaya workflow class dependency
new ad01161 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 2a2782a adding workflow related resource layer
new 14a566a fixing compilation issue
new d1bb382 Added TestWorkflow and fixed set of compilatin issues
new d2501c3 adding starting scripts to workflow catalog
new fb75a2f changing get all ssh credentials per gateway method
new e21fae7 adding workflow catalog properties and fixing issues with starting up databases
new ce79558 Fixed all compilation issues of workflow-core module
new d8df3d0 fixing app-catalog sql script issue in POSTJOB_COMMAND
new b4ca1eb Added Apache License headers and remove deprecated test methods from json workflow parser test class
new 4c79077 update generated code and fixing compilation issues
new 2bab218 fixing NPE at launch method
new 54bb719 fixing NPE at launch method
new 11ea501 Implemented JsonWorkflowParser and added unit tests
new b96cb16 remote cluster when changing login username
new caca2fe merging develop with master and resolving conflcts
new 4515718 adding remote cluster when login name changes
new 685b3c2 Merge branch 'develop'
new 64a3875 adding deleting storage resource data movements
new d3cf5bc fixing storage resource bug
new 38c2c36 Build runtime model of workflow graph after parse the workflow description
new 24587f9 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 614f8bb mysql previous versions does not allow two now() functions
new 7a345e5 updating the credential-store-mysql.sql
new 2c2d63d Merge remote-tracking branch 'origin/develop' into develop
new fa6b4d8 fixing AIRAVATA-1892
new ace0782 Merge branch 'develop'
new 3a9a18a Removing log message
new c72a90e Fixed issues with workflow runtime model build
new dad110b adding gateway usage reporting AIRAVATA-1895
new 4721083 adding gateway usage reporting AIRAVATA-1895
new 6718650 removing xsede from usage reporting
new 03cd77a removing xsede from usage reporting
new 3ac76fe adding gateway reporting to app catalog
new e303bb5 cleaning up airavata-server properties
new f22acb8 creating credential store database as a seperate when server start up
new 48e2593 Moving usage reporting gateway id into resource preference
new b09ce0c Merge remote-tracking branch 'origin/develop' into develop
new 8e23fad credential store start up logs and adding xsede job reporting to JobSubmissionTask
new 55f190c adding alamo parallelism command
new e6d6827 merging master with branch
new 91ef607 commenting out mysql jar
new d9a1075 adding correct username for gateway usage
new 4363669 adding parallelism as a seperate enum
new 55d2fe9 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 4772b99 correcting parallelism typo
new b537f35 adding gateway instance id to allow gateways to specify group id's
new f0c730c adding gateway instance id implementtaions
new d66d169 adding parallelism type
new 833de75 adding parallelism types
new 851117f adding parallelism table in manifest
new 630c751 Merge remote-tracking branch 'origin/develop'
new e2379f5 Added archive flag to experiment model
new 44bd69c Generated thrift code for archive falg
new 97ea70c Added registry level code for archive flag
new 5f29e9f Added archive flag to process model
new 75fb3b3 Added Archive Type as another data staging task type
new 7fbc624 adding working directory archive flag
new 4e80197 Completed ARchiveTask
new 0888365 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new cf4f3f5 checking set archive is null
new a1df4ad Merge remote-tracking branch 'origin/develop' into develop
new 471ae44 adding a API methof to verify if user exists within airavata
new 6c4b50f Merge branch 'master' into develop
new 39483e4 Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new bb3331f remove tar file from remote resource after successfuly removed from computer resource to storage resource
new 5965560 Removed archive flag from experiment and use app catalog archive flag
new f7ea977 Set App interface resource archiveWorkingDir property
new 4a04fab Refactored Archive Task
new 4968ee8 Fixed RemoteDir issue
new fcace74 merging develop
new 82d4899 removing unused java endoresed and java home requirements
new 6ebc2b3 Merge branch 'master' into develop
new c36aa15 change permisson of archive files
new 887ea09 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new a9a331a Change archive file permissions to 755
new 63d742b changing output data staging according to - AIRAVATA-1909
new 49e962d Added monitoring module
new c11667b Create new session if previous connection is closed
new 03ca7c9 Fixed archive task issue with experimentDatadir
new 10274c1 Added Unicore security context population code
new 6d692ee Added logs to capture ssh connection creation and reuse
new 47409ba Test ssh session with test channel to verify channel creation is working, if not re initialize a new ssh session
new 8496ae6 HPCRemoteCluster imple use Factory class in gfac impl to get ssh sessions
new 6d32024 Add task creation logic for unicore jobs
new a963d3f refactoring the datacatalog code
new 03afa2d adding logical path to data product
new ec6e9d0 making security protocol optional
new d54afbd changing the default SCP Data Staging task name in gfac-config.yaml
new cf6304c excluding mysql from distribution
new 6c5645d adding replica catalog related API methods
new 7e7e3a9 Merge branch 'develop'
new 2442159 Fixed experiment lauch error with unicore
new faabd97 changes to the data catalog sample
new 3748742 resolving replicas at the orchestrator
new a23cc63 append filename to logical path only when data type is file
new 5e9bf91 creating parent logical dir when creating replicas
new 8574272 fixing schema issue
new 199c301 adding colon to product uri
new f30e73f Fixed issues with BES security context
new 6c483bc Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 464c5b4 setting parent uri for data products
new 844a9ab Merge remote-tracking branch 'origin/develop' into develop
new a2ff432 fixing typo
new 04f6f59 renaming data-catalog to replica catalog
new cf8dc28 changing db script names
new b2740e7 fixing missing /
new 18cd83c fixing child data products JPA issue
new 02cbb8d adding API methods to get parent and child products
new 3357169 adding API methods to get parent and child products
new 2453195 adding storage resource id to input and outputs
new 8e4212e setting replica URIs for experiment outputs
new fd9b64f fixing build issue
new ef4329c Make unicore works with local files
new 253dee8 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 5d36493 setting username in process model
new 6f39725 Merge remote-tracking branch 'origin/develop' into develop
new 03c0715 fixing typo
new 1eda8c9 fixing typo
new 5f484b9 sending full uri instead of value
new ab262c7 Merge branch 'develop'
new 7bde79b Stage in and out jureca inputs and output from storage resoruce
new eeb1016 Merge branch 'develop'
new e8b7773 Added host name to unicore output path URI values
new 3dce244 Merge branch 'develop'
new 5444ba3 Added info logs to track jureca file movements, initiate security property with every request
new f0198a4 Merge branch 'develop'
new 518868a removing stale dependencies
new 777e6f1 removing stale dependencies
new 16ff3fd Merge remote-tracking branch 'origin/develop' into develop
new 6c301e6 Added Airavata Cloud module to repo
new e0b674c Merge branch 'develop'
new 27e93a0 adding data model parameters to override scheduling - AIRAVATA-1945
new e5ae01e Initial implementation for AIRAVATA-1945
new 9b52485 adding scratch location override - AIRAVATA-1945
new 7c30f78 Add both stdout and stderr as failures reason for job
new cfee70c Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 6b49608 Save job model on error
new f5e0f22 Trying to fix for the NPE with scratch location
new 2536b33 temporary revert of scratch location
new 662728b Fixed NPE with scratch location
new fa2c064 removing duplicate airavata-server.properties file. changing data catalog to replica catalog
new 232d346 excluding mysql from distribution
new 975edba Adding the cloud-provisioning project
new b5bdad1 closes apache/airavata#31 - merged with develop branch
new cf575fe Added cloud provisioning module to build with cloud module
new d522a27 Removed cloud module from main build
new 8b9f5c8 Adding floating ip association with instances
new e1b2005 Merge pull request #1 from apache/develop
new 4a1e79f Merge branch 'develop' of github.com:vaglomangirish/airavata into develop
new ebae1a7 Adding methods to create network, subnet, router, interface
new 77a5118 Fixed concurrent issue with sessions
new 7781ff8 Exit from while loop if sucess
new 47290ad adding backend functionality for notifications
new d905749 Merge remote-tracking branch 'origin/develop' into develop
new 22ae026 adding missing thrift class
new 38c6423 Retry 3 times if jsch channel issue with execute command
new 2a30f80 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new bd239d5 Merge pull request #1 from apache/develop
new 45adf30 Merge pull request #2 from apache/develop
new de05f6b Fix indentation issues in code and properties file.
new 26fd7c3 throw jsch instead of ssh exceptin in ssh make directory api
new fad2174 Merge branch 'develop'
new 84913b5 Merge pull request #2 from apache/develop
new 916a825 fixing notification message bug
new d721666 Merge remote-tracking branch 'origin/develop' into develop
new 79a9f1d Merge branch 'pr13' into develop
new 60bfc4d a placeholder for playbooks
new c65d050 ./modules/configuration/server/src/main/resources/gfac-config.yaml
new 81e4a39 adding missing break statements
new ab0541a updating notification model
new 72b594a fixing bug
new 7747df1 returning boolean for updateNotification
new 8dafd8f returning boolean for updateNotification
new ffd1954 returning boolean for updateNotification
new f5cf057 returning boolean for updateNotification
new 59726d7 sorting notifications
new e93e071 adding identity server tenant and credential for IS in GatewayProfile
new 63825ce changing info logs in AiravataServerHandler to debug logs
new 3bb7f49 adding capability to store and retreive PWD credentials in the Airavata API
new 421a441 removing gateway credentials
new c7400a9 fixing portal user not set error
new 1b6ee7e Adding gatewayId to authzToken
new 5f59387 retreiving credentials from GatewayProfile in security manager
new 3418fda credential store client initialization retry attempts
new 0c9e4be credential store client initialization retry attempts
new 944ccc8 credential store client initialization retry attempts
new 12f5b01 credential store client initialization retry attempts
new 9f44797 fixing bug
new e3cdfd1 fixing bug
new 00b1630 fixing bug
new e101392 removing get all user SSH keys
new d1a6e55 updating airavata-server.properties
new cd243d3 updating default xacml policy
new 58401a6 getting the subject name from OAuth access token
new 988293e getting the subject name from OAuth access token
new 67b43ce fixing bug
new 220cbbd changing the info logs to debug logs in Security Manager
new 40c6f40 adding jureca monitoring email
new 4845de4 adding travis yml file
new e167947 adding travis config
new 0f962e7 making a trivial commit to trigger travis
new a6b27ce Adding JPA multi threaded enabled property
new 2c7da5e Merge remote-tracking branch 'origin/develop' into develop
new 800b96f adding missing appCatalog initialization
new 4708005 Merge pull request #3 from apache/develop
new a69c789 Reuse existing floating IPs if present instead of requesting new every time.
new 3eca754 Adding a thrift datamodel for the google doc version discussed earlier - AIRAVATA-1016
new 24ced80 add simstream module to airavata
new 486d733 fixing basic maven warnings
new f70a688 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into pr34
new 375b531 add simstream module to airavata
new 0da02d2 Added Xbaya UI
new 4ed7cf4 removing xbaya target from repo
new ba2e3b6 closes apache/airavata#38 *merged after rebase*
new ca49a0c closes apache/airavata#37 *merged after rebase*
new 5f5145d closes apache/airavata#37 *merged after rebase*
new b0bcba1 closes apache/airavata#38 *merged after rebase*
new d244ac7 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into pr38
new df0df10 Further updates to user model - AIRAVATA-1016
new 19c514c resolving the merge conflicts
new 21fcc27 Adding the user-profile CPI and core implementation
new 43bef68 setting user id to airavataInternalUserId
new f23fbd5 adding UserProfileCPIImpl Factory
new 75a87bb adding user profile thrift generated files
new 120d06a Added missing thrift auto generated user profile model classes
new a79e690 Adding Email monitoring code provided by Siddharth
new 361357e adding initial version of the group manager data models and CPI
new 36afbe6 Merge remote-tracking branch 'origin/develop' into develop
new c3ca681 fixing merge conflicts
new a13ec8a Added MailConfig pojo and renamed consumer and reciever classes
new c8edcbf adding the missing comma
new 464012b updating group-manager data models
new 79c5956 Merge remote-tracking branch 'origin/develop' into develop
new 1ba2e7d handling NP issues
new 1ee72fb updating API method
new 8d937db fixing test failure
new e0050dd adding AIRAVATA_INTERNAL_USER_ID to exp catalog users table
new 9dd7c14 adding get all users in gateway method
new 69e71fb removing stale class
new 10b7b12 adding searchAllAccessible ExperimentCatalogAPI
new c9ddaeb removing redundant experiment search API methods
new 08e9b45 unifying project search API methods
new cded43e adding missing class
new d23d572 fixing build failure
new 49dfd42 fixing test failure
new b450b85 fixing test failure
new b34d8a4 updating xacml policies
new 4e53f23 testing where experiment id IN clause
new 233e614 fixing query typo
new 35d0706 fixing query typo
new ad6b525 test
new 7a636a4 test
new aedabdb updating the search projects API method
new b673bcd Added new script files
new 8e39083 Added servers script parameter
new 11558d6 Added meaningful log messages and refactore ServerMain and Airavata Thrift Servers
new 31f4315 Added all in one server starting feature
new 5757f12 Added subset server profile to start api-orch and execution subsets
new 94a9fca Deleted old script files
new 5645031 Added URI_COLLECTION Data type
new b9b43b6 Handled URI_COLLECTION input data type
new c382ae2 sorting job list based on time
new d20f77e handling URI_COLLECTION type when creating process input model
new 73fee6b Changed data staging task to work with multiple inputs
new 0b40482 adding hasOptionalFileInputs to the Application interface
new 7addfd9 Merge remote-tracking branch 'origin/develop' into develop
new 0bc5513 fixing NPE
new 70f8579 creating new branch for grouper integration
new 89e0fdc adding more files
new 461f7ec Refinements to user model - AIRAVATA-1016
new c3ea76e bug fix in search experiments and projects
new 5d1f9e7 fixing resource not found exception
new 59449b2 fixing id not set issue
new 2c1dc54 fixing id not set issue
new 9f57e42 fixing id not set issue
new 6398132 adding grouper config files to the bin directory
new 2d398cf User neet to provide valid component server comand with start script
new 7cd9457 merge
new 4260622 code refactoring
new d2f964b merge
new 35466d4 fixing emptyIds bug
new 52dc070 Add method to get user memberships. Allow the owner of the group to make updates
new 9ced673 Adding extra fields to create gateway approval workflow
new f85d41a WIP
new 6148dab fixing get all users error
new 034de76 adding more fields to the gateway Model
new 7c6a11d fixing throw exception issue
new c772db0 Fixed test failures
new 1ec186e Added 0.15 and 0.16 release note
new 171ee0c WIP
new 2cf282d Refactor 0.16 release note
new eaf20cc adding Group Management related API methods
new 2e7ecb3 adding missing files
new 714fcae Updage INSTALL file
new d3e1499 Adding extra fields to create gateway approval workflow
new 07c725a WIP
new fd5d836 adding more fields to the gateway Model
new 2a3b348 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 3b09770 Added missing thrift gen classes
new 1148ffc Fixed issue with SecureClient
new d12f590 fixing getAllAccessibleUsers issue
new 5f9dace removing main method added for testing
new 77e661b adding gateway admin details to workspace model
new 1fdcf2a Added missing apache licence header and added maven license plugin to gfac-core
new bafcebf Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 2c6d1d5 updating registry code to support new fields in the gateway model
new 620d9fb Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into grouper-integration
new d6a8208 adding missing files
new d001846 modifying grouper based search in AiravataServerHandler
new ddda60c fixing bug in registry related to getAllGateways
new 69631af Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into grouper-integration
new d9d0aa5 Javadoc fail on error false to fix release process error
new 53e143a [maven-release-plugin] prepare release airavata-0.16
new 1815433 [maven-release-plugin] prepare for next development iteration
new 1e355bb setting gatewayApproaval status
new 1bf88d5 Merge remote-tracking branch 'origin/develop' into develop
new 639e891 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into grouper-integration
new 1687396 fixing bug
new 21dee28 merge
new 936a499 fixing bug
new 6129998 fixing bug
new 14bd6d9 returning true for update gateway
new 4e92050 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into grouper-integration
new ab43d4f adding missing files
new 1871ba1 fixing clone experiment bug related to sharing
new defc75b return empty when accessible number of resources is zero
new 971947c creating project in grouper if not it exists
new c811b57 setting gatewayApproaval status
new b7768cc fixing bug
new 7ced649 fixing bug
new 5e14554 returning true for update gateway
new 537098e Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 501d3d8 Fixed test failures with api server
new 3d5af19 minor fixes
new 67e1f7b fixing username mismatch issue
new b0bccc1 Hacky way to fix CILogon JIT provision in IS
new 9ce2541 Merge remote-tracking branch 'origin/develop' into develop
new e43a5a5 Hacky way to fix CILogon JIT provision in IS
new c1c3035 disabling fine grained authorization
new f28a47e Initial commit
new 83e98ae Airavata ansible scripts
new 76e613a Updated readme file
new bbe01a7 Fixed readme issue with roles
new fdafdcb Refactor readme
new 5f7bce6 Refactor readme
new f50e7ad Merge branch 'master' of github.com:shamrath/airavata-ansible
new c73f0b0 merge
new 5025f4f changing the group manage version
new 29e666a rolling back
new c5b37ac Added pga role to deploy pga, fix #1
new cf8be0d Modify readme and added .gitignore file
new b311aa0 hacky fix to WSO2 IS issue
new 22a68cc Rename setup to evn_setup
new 1fb4369 Added airavata role tags
new 414c0e9 Added database role to install mariadb on centos 7 , fix #2
new 433ae48 Use fqdn instead of ip4 address in hosts file, removed redundent tags from rabbitmq and zookeeper
new 3e9935f adding more statuses to GatewayApprovalStatus and declinedReason
new 79bdeb1 adding missing update lines
new 2d959e0 Merge branch 'master' into develop
new 3aca4e9 Added replacer maven plugin to remove data generated by thrift gen files
new b08d0e6 Remove data gen from thrift gen classes
new a3f8d88 Added replacer maven plugin to airavata-api-stub
new 7850458 Added maven replacer plugin
new c1df055 Added allocation optional value to computer resource preferences
new f831fed reservation, and qos fields to compute resource perferences
new 9bc25f9 Qos per queue: que1=qos1,que2=qos2,que3=qos3
new ab6c1de Merge branch 'master' into develop
new a4716a7 Added qos, reservation registry changes
new f88859b Merge branch 'master' into develop
new 2d9fd25 adding registry server module
new 4e9c4f0 updating the server start/stop scripts to acomodate registry server
new 7666d32 fixing startup script issues relating to reg server
new 610a8d2 setting placeholders to gateway object to contain oauth client id and client secret
new 388d90a fixing wrong database name
new 876a140 Fixed NPE with reservataion start time and end time
new 7ce90c5 Merge branch 'master' into develop
new 0e14f97 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new c01d7a1 moving registry code from API server to registry server
new 25ffe34 Merge remote-tracking branch 'origin/develop' into develop
new 8df73c9 fixing port host confusion in Application settings
new 4157065 updating the distribution pom
new a6670f8 Refactored messaging module to remove duplicate code and support multiple subscribers
new e247b00 Refactored messaging module to remove duplicate code and support multiple subscribers
new 20b3d25 Merge branch 'messaging-refactor' into develop
new e759b55 Check reseravation start and end time, refactor createJobDescriptor god method
new 2df4bb2 Merge branch 'master' into develop
new 5521ea6 adding requestCreationTime to gateway object
new 6f1883b Merge remote-tracking branch 'origin/develop' into develop
new 3a70c59 adding project and experiment search fix for non initialized users
new e4cc54d Refactored messaging module to remove duplicate code and support multiple publishers
new 12d9efb Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 65c2a96 Removed PublisherFactory class and activity publisher properties from airavata server properties
new 98cbb40 Removed PublisherFactory class and activity publisher properties from airavata server properties
new 474ae23 Merge branch 'messaging-refactor' of https://git-wip-us.apache.org/repos/asf/airavata into messaging-refactor
new 63696ff Merge branch 'messaging-refactor' into develop
new 4e3dc9a ApiServer publish experiment submit events
new 1eb3b41 removing registry core and cpi dependencies from Airavata API Server
new b9b2480 Merge remote-tracking branch 'origin/develop' into develop
new 54f5c34 Orchestrator consumerls experiment submit events
new 01716e5 Fixed merge confilcts
new 79aa486 Fixed NPE with Gateway resources
new fe87f9c return empty list when user not existant
new 7eacf84 Merge remote-tracking branch 'origin/develop' into develop
new d19f8c5 return empty list when user not existant
new a94e0ef Remove 0.16-SNAPSHOT version string
new abcdd33 Merge branch 'master' into develop
new 1ecff76 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new db9e3b7 Registry java8 PoC
new f4aeee5 Fixed NPE with rabbitmq broker url
new 3fcde52 Set update time for experiment launch and cancel events
new 99d3f4b merge registry-java8
new 9f979b5 Fixed messaging publishing issues
new cfe62c3 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new c6a82a0 undoing registry java8 revert
new 3f29cfd Fixed incompatible durable bits
new b168933 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 18ea6c2 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new bc37334 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 309a9ff Fixed experiment cancellation issues
new b284167 Fixed NPE with experiment cancellation
new 67102da setting default gateway request cretion time
new 93ec75b Deploy wso2is on aws EC2 instance
new ab13cf6 Add NOTE and updated gitignore file
new 779cc37 merging develop
new c18b06c Added java role and make rabbitmq works with aws
new 86a3919 Start zookeeper as a systemd service
new 6e0715b start mysql on aws ami
new d0c6957 adding requester username to gateway
new 0b29a5c Changed grouper log level to FATAL
new 4427718 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 7b14e0f Addition of AMQPWSTunnel as an Airavata module
new ef310d3 Added qos and reservataion entry to configuration resources
new 2b6f220 Airavata pga and gfac works perfectly
new ff2e1ae Make pga ansible script works with aws centos
new ff18106 merging jeffs gsoc project
new 05ea66e [AIRAVATA-2058] Add a separate profile for jenkins, until AIRAVATA-2057 is addressed and use that profile in jenkins
new 43d17ae [AIRAVATA-2058] Add a separate profile for jenkins, until AIRAVATA-2057 is addressed and use that profile in jenkins
new 1dab79b Fixed qos issue
new 3536751 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 415e9b7 making experiment status a list in ExperimentModel
new bfff64c fixing the database creation failure
new ad06b47 adding registry refactoring effort module
new c450f40 updating the pom.xml to include new module
new a3950c9 [AIRAVATA-2057] Move the distribution directory to modules to slow down the distribution build
new 21c3e78 adding missing setter for requesterUsername in gateway registry
new cc009e3 merging remote
new 3ce49b9 updating the registry refactoring code
new 171c042 adding process model classes
new eee49d3 adding job and task database models
new b46fd51 making errors and statuses list in Process and Task models
new dc6012e Initial commit
new 7429aa6 Added zookeeper and mesos roles
new 8868abc added .gitignore file
new 2b3dec8 Fixed saving current time as reservation start and endtime
new 570832d adding experiment catalog new database models
new 6b9b441 making skip tests true in refactoring module
new ea4c2f6 Added Fixed for reservations
new 729a15f Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 5c9cec8 used pag configure in host file
new ae54612 making sharing enabling configurable
new 12383cc removing registry refactoring module
new a0c9be8 fixing get job statuses issue
new 9c02fe0 fixed nonASCII in pbs email content
new 03db1df Added mesos master and slave yum install ansible
new 223ea3a Fixed security issue
new 1ae8263 successfully started mesos-master with zookeeper ring
new d5a9c8a Updage README.md
new 21545be Updated readme to avoid known_host adding prompt
new 9e6f2b1 Added registry ansible script
new fec0b37 Update airavata properties file to use new rabbitmq properties
new 2289aed fixed AIRAVATA-2096
new 5dbf84c update error model, AIRAVATA-2096
new 96e31a9 update experiment error model, AIRAVATA-2096
new 875fc27 merge hotfix
new 475f687 Adding develop branch variables
new 2ab5a72 Change hostnames in runtime to avoid address bind issue
new 06ef33f intitializing credenital store db using JPA models
new 2d9827c fixing typo
new 4d908fb fixing typo
new a5156a9 fixing credential store not initializing issue
new 72f35c1 Update properties
new f3b8e02 setting default gateway approval status
new c084683 fixing sharing issue
new 264f616 fixing gateway intialization issue
new 83a0bf8 fixing gateway intialization issue
new 43b3757 fixing gateway intialization issue
new f513f56 Update configuratios
new 7071ef1 Imported mesos ansible scripts to airavata repo
new 514567c Imported ansible-airavata repo to airavata repo
new b7a7920 changing ansible ports
new 59142dd changing document root
new 7f983b8 Implement Ansible playbook for OpenStack resource provisioning
new 8eea17f [AIRAVATA-2065] Introduce more robust logging mechanism for Airavata
new e317d77 [AIRAVATA-2126] use formatted log message from ILoggingEvent
new 81c6ea8 Feature request: User Compute Preference
new 67a9f64 add net* logger to kafkaAppender
new c306468 Replaced xslt templates with groovy templates, fixed AIRAVATA-2124
new 1917d3b Removed xslt templates and xsd file from repo
new 33c0251 api method get data sharing enabled
new d5f825c setting the column sizes to 100 in Community User table in Credential Store
new 1f48ce3 Add logback.xml to configure logback logging with TimebasedRollingPolicy.
new 879f0a7 Shorten columns so primary key is shorter
new 8f91bde AIRAVATA-2113. Fixing local provider
new 04045c4 Added override fields to procssModel
new 9b66d67 give precedence to userconfiguration data, fixed AIRAVATA-2140
new c139d65 fixed AIRAVATA-2142
new a899b52 merged hotfix-AIRAVATA-2142
new 9f0445f merging marcus's branch
new 8469eff correcting the registry code, testing not yet complete
new fa5a1e0 updating local to upstream develop
new 50cf71e adding final changes
new 82e5752 implementing airavata sharing manager
new 2c81c1e adding getAllAccessible Users method
new a8b15d8 fixing wrong constant value
new a4ed488 initializing a sharing domain when creating a new gateway
new eb0cd63 Adding SSHCredentialSummary model & adding desc field to SSHCredential
new cab0b77 removing redundant user group creation
new 3170fef Making the token field required in SSHCredentialSummary
new 2c463ca getUser projects return user accessble projects also when sharing is enabled
new a4ba60c fixing wrong Entity Type
new efed295 removing add and delete method for SSHCredentialSummary, serverhandler implemented got get method
new 218870c adding method to get all ssh pub key Summaries
new fcc44af implementing DAO and db utils
new b654836 Implementing API level changes
new 81d8dee fixing gatewayId name change issue in AppCatAbstractResource
new 5aa40b8 Adding SSHCredentialSummary model & adding desc field to SSHCredential
new 157efab Making the token field required in SSHCredentialSummary
new 077fd2c removing add and delete method for SSHCredentialSummary, serverhandler implemented got get method
new c4fb532 adding method to get all ssh pub key Summaries
new 6632b1a implementing DAO and db utils
new c31cfa6 Implementing API level changes
new cc74960 Correcting the create table query which was failing during build
new d8c17d9 Merge branch 'ssh-cred-model-change' of github.com:anujbhan/airavata into ssh-cred-model-change
new 7c6c562 moving sharing registry initialization to AiravataServerHandler
new ac76936 Adding getAllSSHKeyForUsersInGateway and removing dates in auto gen files
new 8e59d80 Adding Airavata Api level changes associated with last commit
new 1b91dd1 Code cleanup
new 6250ff1 Approved and merge pull request 52 into develop branch
new c9e26ec moving credential-store data model thrift file to data-models directory
new bff7655 adding search criteria as a new struct
new 7cb338d adding first name, last name, email and icon to sharing user profile
new a8e0333 Approved and merge pull request 54 into develop branch
new e36c145 adding separate distribution
new 9101a51 implementing sharing server
new 1764699 fixing the sharing server start script issue
new fe76d11 changing the module name
new 6efb535 removing invalid echo
new eb62af9 fixing logging issue
new 4bb7c6d owner permission is not revokable or assignable
new d521922 adding api docs of the sharing registry
new dd319ce resolving bug 1: getUserResourceProfile will return null if not found in DB
new ff48f8c resolving bug 2 : removeUserComputeResourcePreference is working now
new e159a03 Merge remote-tracking branch 'upstream/develop' into user-compute-bug-resolve
new 87564d2 adding docs
new 6718761 updating docs
new 61a0fc9 adding initial how to use documents
new b6e07d7 fixing id issues
new e04785a adding missing thrift file
new 8bc2dcc Added template language to pre and post commands
new b85d3db Improved airavata ansible readme
new 273d074 updating getting started guide and fixing some sharing issues
new 07097ce updates for sharing catalog tests
new 6be0702 WIP
new a6860dc fixing full text search issue
new 2ac72d9 logging all errors at the server handler layer
new a6e7e4e fixing group membership retrieval issue
new 43231ee changing the default port
new b96926b undoing last change
new 1fcf8c2 adding image describing the core concepts
new afb9c6c adding owner id for entity search fields
new 2dda44b changing index.html
new 2f63406 handling dependency issues
new adf1e62 fixing entity conversion issue
new 61d7b68 minor update to the doc
new 08e306e adding missing include statement
new c2bf43b Merge branch 'develop' into pr56
new fdb5191 Add serialVersionUID for previous version of class
new 76c9eaf fixing the clob not getting set issue
new ccc708b AIRAVATA-2156 Add isNull field to UserResourceProfile
new 7dd8516 Merge pull request #1 from apache/develop
new 48ea4a0 adding token to credential summary model
new 8422d23 Resolving User storage preference bugs
new 1d710c9 Merge branch 'develop' into pr65
new 9890991 Merging PR61 and 65 into 63
new 08c2766 closes apache/airavata#2 #2 *Won't fix* the samples are now upto date with latest code
new 0073405 closes apache/airavata#14 the fixes were applied but PR was not closed, closing now
new e45e07e closes apache/airavata#15 the fixes were applied but PR was not closed, closing now
new 3aecdd2 closes apache/airavata#16 the fixes were applied but PR was not closed, closing now
new 87a5521 closes apache/airavata#17 the fixes were applied but PR was not closed, closing now
new 908569b closes apache/airavata#20 we should avoid pushing git ignore to repo and let IDE's ignore these files, closing now
new ab247b6 thanks doug for this contribution, this commit closes apache/airavata#28
new bfc193a closes apache/airavata#28
new 2baa6d6 closes apache/airavata#28
new 6368b16 closes apache/airavata#28
new fc0aeac closes apache/airavata#39 since this version required airavata users to install aurora command line client, this is superceded by a programming client PR62. Suggested to preseve these commits in the sandbox project
new 20902ba closes apache/airavata#41 since this version required airavata users to install aurora command line client, this is superceded by a programming client PR62. Suggested to preseve these commits in the sandbox project
new 0300c52 adding Airvata API method to initialize ssh keys with Desc, Airavata - 2158
new b4fd4ff Refactored RemoteCluster thridparty file transfer method
new c50470c Refactored RemoteCluster copyTo, copyFrom and makeDirectory
new 0f781b2 Adding aurora-client project
new cdbe5c5 Adding README to aurora client project
new c2e43fa Removed the bin directory which contained Thrift generated class files
new c930348 Added missing apache licence header and added maven license plugin to cloud modlue
new 4012db2 closes apache/airavata#62 merged the pr manually so closing pr
new 325d163 Adding thrift gen classes for all sdks and add cloud related types to compute resource model
new b66fa88 Merge pull request #2 from apache/develop
new b7bebec Adding Autodock test job submission
new 21b1923 Added job submission task and aurora montoring services
new 58db743 Merge pull request 69
new 6d51651 Start aurora cloud monitoring service
new ba9d60d Update aurora schedulear period to 5 sec
new 5904cb1 adding node and cpu count preferences to compute resource and application deployment description
new f396cb8 fixing tokenId not set issue
new 512d35e Added CloudJobSubmission to persistence xml
new e3da091 Merge develop branch
new 9d2497c Added create Cloud job submission method to AppCatalogJPAUtils
new 30aa6f6 Add provider name to cloud job submission
new 11ff4d8 null check resource job manager in Abstract remote cluster
new b3d4c7a Added aurora client to distribution
new c72417e Updated aurora monitor task to sleep after a round of status check
new 6d32613 added missing dependencies to distribution
new 873d684 update aurora process order and hostname
new dc3d530 Fixed typo
new 64f823b Set jobmodel description
new e663370 Fixed NPE with cloud monitor mode
new c64d0f0 Mark process is complete absense of next task id
new 30f187a Fixed jobstatus update issue in aurora monitor service :
new 4a92da4 Fixed jobstatus not found and complete process if not recovery task found
new bf5d8c7 Deletege cloud environment creation task to common env setup task
new db027a5 ignoring cloud provisioning tests until they get fixed
new c6e96ca Merge pull request #3 from apache/auroraMesosIntegration
new dbcfd77 Reverted scp refactoring
new a45294e Revert scp thrird party refacotring
new fe6ebe9 Merge with develop
new 01f8044 Move aurora-scheduler properties to airavata-server.properties, AND detect leading aurora scheduler
new 6d5c632 Merge pul request 70
new ea5fc9b Simplified json template loading code
new 4cafd7a Improved aurora job submission task to use application deployment and delegated datastaging to framework
new 926a01a setting the default port as 22
new 7937d1c Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 593331b Merge pull request #4 from apache/develop
new d7d058b adding new field useUserCRPref to UserConfigurationData model
new 946143a Make AuroraThriftClient a synchronized singleton & Reconnect with Aurora scheduler on leader rotation
new 1ab0102 Refactored code a bit
new 0717ae3 Merge pull request 71
new a36adaf AIRAVATA-2190 Add newExperimentProjectId to cloneExperiment
new 02021d3 removing groper configurations
new 56384a1 Airavata ansible scripts
new e275b7b AIRAVATA-2190 cloneExperiment: check for project write access
new 2768cf1 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new cdce06d Merge branch 'AIRAVATA-2190-clone-experiment-in-different-project' of https://github.com/machristie/airavata into develop lternatively you can review and apply these changes as the patch at:
new a82e34e cleaning modules
new 2b13da9 Fixed sharing registry build issue with pom versions
new 9f3810e Replaced cloud job submission command with generated script
new fe7bc1f Added cloud script template to distribution
new aefd913 Fixed NPE with resource job manager
new 4d9c56e Renamed AuroraJobSubmission -> AuroraJobSubmissionTask
new 9ee4022 Add useUserCRPref boolean to processModel
new b5d7796 adding module to parent pom
new db8beb6 Merge branch 'cluster-monitoring' into develop
new 914799c Implementing cluster status monitoring
new 2ea1e88 Merge branch 'cluster-monitoring' into develop
new b8977a7 adding thrift generated file
new 3660cd8 Give precedence to User CR Pref over Gateway CR Pref
new b2bded2 Added new Cloud resource job manager type and Renamed AuroraJobSubmission -> AuroraJobSubmissionTask
new c0665f1 Fixed sharing registry build issue with pom versions
new e4a6b18 Fixed NPE with resource job manager
new 2e7fb05 Handle stdout and stderr with aurora job submission
new 3fa3c3f fixing AIRAVATA-1517 : When there are no JobManager Commands, Empty records get created upon updating Job Submission Protocols
new 0fda5a8 AIRAVATA-2207 Add getExperimentByAdmin method
new 6a73db2 making entity manager thread safe
new c62df28 fixing JPA issue
new 073e456 fixing JPA issue
new 32e0b8b fixing AIRAVATA-2217 : Sharing service should prevent removing sharing of experiments from the project's owner
new 53afafa making method private
new 93431b1 fixing project id not set when creating experiment
new 5f3b778 AIRAVATA-2207 Add cloneExperimentByAdmin API method
new 400e24d Merge branch 'AIRAVATA-2207-admins-cant-see-exp-summary' of https://github.com/machristie/airavata into develop
new 177a248 fixing AIRAVATA-2185 : Add OWNER ResourcePermissionType to sharing API
new c456337 fixing AIRAVATA-2175 : Prevent changing project owner
new 4139ae9 keep session with login username + protocol + computer resource Id as key
new f660434 continue.. keep session with login username + protocol + computer resource Id as key
new 6e5d1c6 User user compute resource preference if user provided
new 3d98326 Fixed isvalid method logic
new bff26b6 adding a descriptive log message to cluster status monitoring code
new 8035df9 resolved save method bug, it now accepts (userId,GatewayID)
new d41f46b adding log message to debug.
new 98465df removing the temporary log lines
new ea5d325 changing the permissionId in permission types in sharing catalog
new 51a2bfe fixing AIRAVATA-2240 : Creating new repository instances for every sharing catalog request
new 55fe7ba fixing AIRAVATA-2240 : Creating new repository instances for every sharing catalog request
new 3582fef Init experiment catalog before subscribe to experiment launch
new a1dba1d fixing sharing data migrator pom issues
new 26e832d fixing AIRAVATA-1868 : When modified and saved the changes are not applied to application interface
new 2e05c23 AIRAVATA-2232 Add CredentialOwnerType to credential model
new d678f4f Merge branch 'AIRAVATA-2232-CredentialOwnerType' of https://github.com/machristie/airavata into develop
new 98378b5 adding composite primary key to model class
new f3c60d0 adding changes to resource class for newly added composite key
new 1bb8042 writing test case for Airavata-2245 bug resolution
new 84f756d making changes to composite primary class, as per comment
new 9f83606 testing multi-threaded set to false
new 087fdbd handling compute resource pref not set for super tenant case
new 5ba819b removing security check for getAllNotifications
new 0cc6ae6 qos and reservertions doesn't get by gateway compute resrouces if login name is given in user compute resource pref
new e429faa removing security check for getAllNotifications
new 4d5b61c fixing AIRAVATA-2253 : Modifications or new email added for notification are not saved in Experiment
new 122fb8d migrating cred data models to airavata datamodel directory
new c1b696b introducing summary type, dependencies and code clean up
new 465f766 AIRAVATA-1792 Filter stats by username, app name, hostname
new d9a69ae migrating user-profile service and new registry components to develop branch
new 49afd99 adding the user-profile migration module to develop branch
new 7b7bb53 AIRAVATA-1792 Appname/hostname filtering
new a94a7ca merge PR #83
new a6c8c27 AIRAVATA-1792 Thrift docs for new parameters
new 9eede35 Improved part of pbs groovy template logic
new 9865e7e AIRAVATA-2163 Setting type on CredentialSummary
new 6867673 merging pull request for AIRAVATA-2163
new a42ccd7 merging pull request for AIRAVATA 1792
new 8fceeb7 Change total memory 'mem' to 'vmem' and append 'M' to make it MB
new 1802a04 changing table name
new ecf26df update registry-refractoring code to user airavata-ser.properties
new a9187f2 update registry-refractoring code to user airavata-ser.properties
new 93a4a66 correcting connection properties varibale in JPAUtils
new c0779c0 fixing AIRAVATA-2276 SQL escaping error in sharing registry: An error occurred while parsing the query filter
new 1ad40e3 adding dependencies to registry-refractoring
new a65a2bd correcting compliation errors
new e65ebc1 resolving dependencies
new dc65b9c using parameter binding instead of escaping special characters in sharing catalog
new 53b52dc AIRAVATA-2282 notification sort: Prevent int overflow
new b33d72b fixing deployment issue
new 2cb5ebc fixing race condition in sharing registry
new ce359dc modules/test-suite/multi-tenanted-airavata/src/main/resources/airavata-server-stop.sh
new b46aa6e modules/test-suite/multi-tenanted-airavata/src/main/resources/test-framework.json
new cd2abca Adding test framework prperties
new 6c4ac5a code cleanup
new c072479 file for future reference
new 4d43fc4 adding pom
new 1e310f3 changing pom and airavata properties in main distribution
new 3f1b73b adding readme
new 445e149 resolved storage resource precedency inside the process context- fixed AIRAVATA-2252, use credential token part of session caching key- fixes AIRAVATA-2284
new 8fb9010 throwing ProjectNotFoundException and ExperimentNotFoundExceptions from Registry
new f40972d Fixed issue with getting user computer resoruces preference user loing name
new 5c6b70b AIRAVATA-2232 Filter by CredentialOwnerType
new 7e141b0 Fixed input staging issue
new 6a63e18 Fixed output staging issue AIRAVATA-2290
new fc8f4a5 Fixed scp direction issue
new b17134d Adding machristie@apache.org to developers list
new 3ceba9d Fixed AIRAVATA-2294
new 4cf37a6 Merge branch 'AIRAVATA-2282-notification-order' of https://github.com/machristie/airavata into develop
new 5cb06c9 Pass credential expception up and save meaning full error message
new a33d2d8 Pass credential expception up and save meaning full error message part 2
new 48469af Pass credential expception up and save meaning full error message part 3
new 6fcd394 Merge branch 'AIRAVATA-2282-notification-order' of https://github.com/machristie/airavata
new c50e3ec upgrade google guave library to 20.0 version
new 644bf89 Fixed AIRAVATA-2284, using guave caching with time based eviction
new 1480cd3 Added logs to track session life cycle
new 9fc238d Handled null values with user preferences
new c4f1141 Handled null values with user preferences part 2
new f97ec69 Merge branch 'develop' of https://github.com/apache/airavata into develop
new 387d5c6 changing QUEUE_STATUS column lengths
new 485e710 adding registry server to startup
new 0108cb2 Fixing a bug in isUserExists api call, the arguments for username and gatewayid are reversed
new 22efc10 bumping api version
new aae0711 reverting thrift date addition
new 306599f AIRAVATA-2305 Removing duplicate Ansible scripts
new e0fbde2 AIRAVATA-2305 Airavata deploy scripts
new 8f6f218 making corrections to user profile service code
new aa98eee adding the server property file, which was left out in last commit
new baaed53 adding dependancy for user-profile service in distribution pom
new c6ba43b adding user profile service to server module
new 69a5855 Merge branch 'develop' of https://github.com/apache/airavata into develop
new 39e2220 renaming classes and including userProfileSerive exception
new 7aa0e2f adding user profile client, which was accidently deleted in last commit
new b642ce9 updating some external dependencies
new 42b84f9 added OS-sensitive vars for httpd
new 025faa6 created Debian-specifig dependency include
new 899781d RedHat specific depenedency installation include
new 6512efc added switch to firewalld install for Debian/Rhel
new 09c8f51 changed httpd name var to rely on OS
new 8193c7f moved OS-specific commands to separate includes
new 125abd2 removed extra line, spell-corrected enable
new bb96168 changed to os-dependent httpd conf
new 193f3b5 changed selinux disable to permissive
new f31e6a3 added correct dependencies for Debian install
new 58542a4 working apache2 config
new 214a068 added working apache2.conf
new ffdb236 using test virtualbox host
new dfdad9b removed user-specific ssh key
new 0ca9853 added pga back to hosts
new fa3fb2e added pga-test host and tag
new 989cfa3 removed pga-test hosts
new ee8207e PGA works on Ubuntu
new e2b2f86 fixing AIRAVATA-2309 : SHARING table: MySQL complains "Specified key was too long; max key length is 3072 bytes"
new 8e08042 merging integration test branch
new 0bde5a6 fixing AIRAVATA-2309
new 8e87d98 AIRAVATA-1517 : fixing empty parallelism type records creation issue
new 6fe8556 fixing AIRAVATA-2310 Storage resource does not work with gateway profile level credential store token
new 3dd731e Removing the self-module dependency
new 59c812b using sharing service instead of library
new 75527b4 making corrections to user profile service code
new 2344867 adding the server property file, which was left out in last commit
new 3e62c28 adding dependancy for user-profile service in distribution pom
new 890b873 adding user profile service to server module
new 8df7492 renaming classes and including userProfileSerive exception
new 32c11f9 adding user profile client, which was accidently deleted in last commit
new 5df3f81 updating some external dependencies
new 05e97d6 Moving registry components for user-profile service to respective module
new 4beadef AIRAVATA-2305 Changing local deploy to assume already built distribution
new 7a66275 AIRAVATA-2305 Adding PGA deploy scripts
new 80dbaba Merge branch 'userProfileService' of https://github.com/anujbhan/airavata into develop
new eb2c383 AIRAVATA-2305 Specifying user for non-privileged code deploy
new f71ef21 setting overriding parameters properly when creating experiment
new a54f781 adding not operator to sharing registry
new 8eca75c updating documentation
new c4d32f4 removing data models not related to user-profile and intantiating user-profile service
new 593f2cf changing package name due to class loading problem
new 52ae834 fixing gatewayReportingGatewayId wrongly set issue
new b5ae4dc Fix for setting usage reporting id.
new b49aea3 added distro and greater version dependence
new d43efb5 moving files to new distro/version name
new 5f65b07 added pga_repo var
new 56acd6b adding CANCELLED state for UGEEmailParser code
new 56263b4 spelling correction on pre-requisites
new d7764ad name clarification; remove old commented tasks
new 6f498a4 AIRAVATA-2316 Configure forward mapping to generate foreign keys
new 2c5854b fixing LSFEmail parser
new 5ba6a6d fixing LSFEmail parser
new ef56b7a adding Done state for LSF email parsing
new 8d2581a adding Done state for LSF email parsing
new 0926abf reusing the sharing client
new cfb0610 AIRAVATA-2322 Fail experiment when validation fails
new a7d5310 rolling back reusing sharing client
new 3072a73 merge
new 3f1914c AIRAVATA-2316 Fixing openjpa version
new c8326ae removing entity-type-id from sharing search interface
new f68f55a AIRAVATA-2316 Adding user profile properties
new 84fcd36 adding IIS_READ_ONLY field to Experiment Input/ Process Input and Application Input
new a7b7fe6 TODO replace plain SQL with prepared statements
new 4120d75 AIRAVATA-2316 Adding API methods to thrift
new 54e0f39 AIRAVATA-2316 Updating Thrift generated stubs
new de26509 AIRAVATA-2316 Initial implementation of user profile API methods
new a700073 using client pools for thrift clients in API server
new 589392e AIRAVATA-2316 Fixing loading user profile, eager fetch emails
new d4dad6d Adding a new job monitoring email for Gordon
new 2f3847b change Cancel status in UGEEmailParser
new 527e635 merge remote branch
new 9526e99 change Cancel status in UGEEmailParser
new 0bc5f2e AIRAVATA-2316 Eager fetch all UserProfile associations
new f07a1dd fixing test failure
new 6931cd3 enabling caching in the sharing entity manager
new deda937 fixing parentEntityId search issue
new af4a04e disabling the cache back
new 1378dbd fixing duplicate entries from search results
new 6c367b9 removing duplicates
new 52fb440 AIRAVATA-2316 Adding authz checks to user profile modification methods
new bfe1066 AIRAVATA-2316 User Profile API methods added to xacml policy
new eed4f7d Merge pull request #1 from machristie/user-profile-service
new e9f14e2 Triggering branch mirror to github
new 01943ba Moving registry components for user-profile service to respective module
new 9085dfe removing data models not related to user-profile and intantiating user-profile service
new e0f63bc changing package name due to class loading problem
new 71dcaac AIRAVATA-2316 Configure forward mapping to generate foreign keys
new bd1ada5 AIRAVATA-2316 Fixing openjpa version
new 53193fb AIRAVATA-2316 Adding user profile properties
new ebba4c9 AIRAVATA-2316 Adding API methods to thrift
new 9dd4fdb AIRAVATA-2316 Updating Thrift generated stubs
new bce873c AIRAVATA-2316 Initial implementation of user profile API methods
new e342063 AIRAVATA-2316 Fixing loading user profile, eager fetch emails
new 08fd8c4 AIRAVATA-2316 Eager fetch all UserProfile associations
new ee8d5ee AIRAVATA-2316 Adding authz checks to user profile modification methods
new a43d1a9 AIRAVATA-2316 User Profile API methods added to xacml policy
new b81bad3 resolved conflicts with upstream/user-profile
new d1ae264 Merge branch 'user-profile-service' of https://github.com/anujbhan/airavata into user-profile
new 326891f Adding db-event-manager skeleton, adding corresponding constants in common
new 2436e7a code cleanup
new 0d35422 adding test packge
new e34722a adding simple REST service for receiving job statuses
new 3c453ae adding Airavata custom email parser
new 530ee96 Merge pull request #1 from apache/user-profile
new af39d44 handling race conditions with multip
new 2d0796f adding dummy AIRAVATA_CUSTOM resource manager type
new 7975778 adding dummy command output parser
new efc2b69 Create airavata-services module with profile-service module
new 594e851 Define and Generate Profile Service Thrift Stubs
new ef9f850 Add profile service constants to airavata-server.properties
new b9bbb78 Add Profile Service Server to ServerMain
new fcc06e0 Add User Profile Core to Profile Service
new f892781 Merge branch 'user-profile' of https://github.com/apache/airavata into user-profile
new cbe1c28 Add ProfileService Server and Client
new 5af1acc Update AiravataServerHandler to use ProfileServiceClientFactory for UserProfileService
new 56fefc9 handling a corner case in email handling from Airavata custom emails
new a749a7c fixing minor bug in the condition check
new 2c30522 updating readme
new fc07b99 uncommenting actual username and password
new ce58c98 Write thrift interface for GatewayProfileService and generate stubs
new 5982619 Add GatewayProfileService thrift handler
new 4e58ef7 Add profile-service-core project with handlers
new 732abde Add gateway-core dependency on profile-service-server
new 362c7d4 Merge branch 'user-profile' of https://github.com/apache/airavata into user-profile
new 7177cac adding logs to identify file transfer issue
new bf2d92d Add GatewayUtils and Gateway entity
new f9e4b0d Add implementation for gatewayresource instead of gatewayresourceprofile'
new 1a619c9 Refactor profile-gateway-core to profile-tenant-core
new f113d16 add tenantservicehandler to multiplxed profileservice server
new b774862 handling a corner case in email handling from Airavata custom emails
new 231e0eb fixing minor bug in the condition check
new 889fd07 updating readme
new bf23eae uncommenting actual username and password
new 1306097 adding logs to identify file transfer issue
new 536cca1 adding isExists methods to sharing service
new 7da786f AIRAVATA-2335 Fix Sharing Reg init
new 741531f adding isShared field to entity
new 2071c7c Merge branch 'pga_update' of https://github.com/ECoulter/airavata into develop
new 4b54ff6 AIRAVATA-2335 Reorganized inventories; updates for deploying on Jetstream
new 60a3223 AIRAVATA-2335 Allow localhost db connections
new 852a4fe AIRAVATA-2335 Moved pga vars -> defaults to allow overriding
new 2a41071 AIRAVATA-2335 SEAgrid PGA deployment to Jetstream
new 3e0a8c4 fix build failure issue
new c7deb67 add prepersit, preupdate annotations to userprofile entity
new fd38523 Add profile-service-commons project
new 5b35224 Refactor profile-user-core code to use profile-user-commons entities and utilities
new 45bacd6 Add profile-service-commons dependency to profile-tenant-core
new 2eb3ee7 Rename gatewayservice to tenantservice in thrift interfaces
new 8e83408 Use abstractrepository to implement tenantprofile business logic
new 648d8ca Cleanup old gateway related code. Use new Tenant related code
new fe0ed74 Refactor JPA configuration for profile-service and add to airavata properties
new fa0c57b merging pull request #101
new f9eb7bc AIRAVATA-2335 Updating README
new 9901335 Merge branch 'user-profile' of https://github.com/apache/airavata into user-profile
new e0110cb GeoGateway PGA deploy; PGA virtual host based conf
new ebc158d AIRAVATA-2335 Tested PGA vhost-based config on jetstream
new c6608d8 adding sharedCount to entity table
new 505e30c adding shared count name
new fc720d4 AIRAVATA-2335 Moving hosts into inventories dir
new 7beb6a4 changin the data type to long
new ae139ff merging remote
new 520ad04 using BigInt for derby
new 866178a using BigInt for derby
new 5d1b345 using BigInt for derby
new a135c82 changing the order
new 0c8c2ae changing the order
new 58c3d52 AIRAVATA-2339 Use default key of user resource profile
new eb7cbc5 adding SQL delta scripts for 0.16-0.17 release migration
new 7cf48b3 updating the 0.16-0.17 delta scripts
new ed6cbf6 AIRAVATA-2335 Updating with Anuj's DB info
new 28b488d Merge branch 'db-migrate-scripts' of https://github.com/anujbhan/airavata into develop
new 3d308ab AIRAVATA-2335 DB password
new 2eb8f21 AIRAVATA-2335 PGA inventories for testing testdrive, scigap
new 7126b1f AIRAVATA-2335 Updating DB names, password
new 8ac8e9e AIRAVATA-2335 Settings portal storage resource
new 7e1d369 adding capability to search based on the shared_count
new 45edb67 merging remote branch
new 5d094c4 Merge pull request #2 from apache/user-profile
new 058cf70 geogateway pga ansible script changes
new 7915c3d Add Zookeeper utilities
new 8d0a13e Merge branch 'user-profile' of https://github.com/ajinkya-dhamnaskar/airavata into user-profile
new 07ebc2e create curatorclient factory
new b4660f6 fix minor issue with publisherzknode data
new 513f284 Merge branch 'user-profile' of https://github.com/ajinkya-dhamnaskar/airavata into user-profile
new c9ae218 Add datamodel for event-driven db
new 38dc897 check is exists before creating
new 3a0b061 merging remote branch
new d0b29a5 DB Event constants
new d850df5 Merge branch 'user-profile' of https://github.com/ajinkya-dhamnaskar/airavata into user-profile
new 86d697b Change DBEvent Thrift Data Model
new 641e936 Add method to get dbevent service-queue-name given service-enum
new fd7f481 ../modules/db-event-manager/src/main/java/org/apache/airavata/db/event/manager/utils/DbEventManagerZkUtils.java
new 11cb924 Update db-event-mgr zookeeper utility to save service queue-name
new 6ec15de Update airavata-server.properties to use mysql-db props
new 2e537fc Add Apache License to pom files
new 495c407 Add profile-service-client-sdks project with java-client-sample project
new 9ee2720 Remove updated date annotation from generated thrift files
new f4edced fixing issues in the sharing data migrator
new 118c7bc sending owner permission users along with read and write
new 668b54d undoing the last commit
new bfc3a84 setting shared count as long
new 9d41944 changing the derby script
new 4fc4983 Added DB Event message handler. Adding nodes to zk based on service discovery message. Sending db event to multiple services based on mapping inside zk. Refined event manager messaging factory.
new 44abf36 adding owner permission along with read and write
new 41cc920 AIRAVATA-2339 Attempting to fix data staging with individual account
new 5a1c864 Add java client sdk for profile-service
new 4066b6c AIRAVATA-2335 Making order of CREDENTIALS columns explicit instead of relying on database default ordering
new f2d0995 Add UserProfile sample in client-sdks
new 5a92eda AIRAVATA-2349 Fixing column typo
new 8c6f18c AIRAVATA-2347 Getting ExperimentCatalog inited with project's gateway
new 9b4c968 AIRAVATA-2347 Removing code for old project sharing impl
new 8ff2912 Add enhancer to pom, update jpa elementcollection
new 053df2f AIRAVATA-2347 Removing use of gatewayResource, GATEWAY_WORKER stuff
new e87cf35 Add airavataInternalUserId to nsfdemographics thrift datamodel
new ed4452a Change validUntil datatype to from long to Date
new 3dfa944 Add: jpa enhancer to pom, Add: adduserprofile sample to java-client-sdk
new 5911656 add entity-type to thrift datamodel for db-event
new 6bc536f checking bounds for experiment statuses when updating an experiment
new f737e8f Deleting DB Event Handler
new 070ff15 Adding DB Event Manager constants
new 973bcfd Adding handler for control messages and DV Events
new eeecac9 Changing queueName to routingKey
new aa0da78 Adding method description
new e33946d Code cleanup
new 5cc3e36 Add messaging dependecy to sharing service
new ba8cfc7 Moved enum out of DB Event constants
new e1e4c3f Added message handling logic for sharing service
new 52a2e26 Register sharing service with listed publishers
new de27617 sort publisher for consistency
new 0b5c98f Adding DB Event message type
new 5faedb4 Send replication-event from addUserProfile
new 6c06eee Added new publish method for DB Events
new 3745340 Changes to consume DB Event publsh menthod
new 98ebc2c AIRAVATA-2350 Including GATEWAY_ID in user resource profile keys
new 2febbe6 Added new publish method description
new 5faa249 Changed DB_EVENT_QUEUE to DB_EVENT_SERVICE
new bd3d404 Separated queueName creation and routingKey
new b65c3d5 Update ProfileServiceUtils and UserProfileServiceHandler
new 01094fa Add all userprofile methods to java-client-sdk sample
new b45bac6 AIRAVATA-2350 Join to USER_RESOURCE_PROFILE on USER_ID/GATEWAY_ID
new d82e335 Finalize changes for UserProfileSample
new 7932544 Move DB_EVENT_SERVICE inside DbEventService enum
new ddf063c DB Event handler for Sharing service
new 8a0f275 Temporarily setting autoAck for DB Event subscribers
new 0524706 Adding Thrift to data model converter for sharing service
new 5a2f965 Staring sharing service DB Event subscriber
new 5f9bb1e Changes to userProfileSample
new 23a6ed2 Runner for DB Event manager
new 2b8aef3 Merge branch 'user-profile' of https://github.com/ajinkya-dhamnaskar/airavata into user-profile
new f7bbec3 Code cleanup
new fa7d765 Add null check on messagecontext updatedtime, set messagecontext fields to not null
new d67e608 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new b3aefe5 Code clean up
new 8c0bccc Start and Close curator client
new 8cca4b6 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new 027a002 Adding breaks to switch cases
new 0974ebb start curatorclient only once
new 9169309 Correcting DB Event object. Removing redundant code.
new e8e47f7 Moving routing key separater to Constants
new cc62d47 Disabling auto ack. Moving publisher subscriber creating after sharing service start
new a5e907c Add Apache license to java files
new 582e25f Moving sharing registry client creation to a handler constructor
new c8a2b8e Add DB Event Handler for RegistryService
new 833baa9 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new 8d30ebe Register registry-service with publishers and start db-event-handler on startup
new 28f133d Refactor GATEWAY to TENANT in DbEventService and EntityType
new f1e1fc2 Fix compile error after refactor
new 3d8c343 Publish db-events for CRUD operations in TenantServiceHandler
new 610d456 Add db-event publishers for UserProfile, Add gatewayId for deleteGateway, Remove date from thrift generated files
new 8de4e23 Add new addUser method to RegistryService
new f8e7f13 Pass gatewayId to deleteUserProfile in AiravataServerHandler
new 2ec0e8f Minor changes to UserProfileSample and TenantProfileSample
new 570bc5d AIRAVATA-2335 Deploy different keystores based on environment
new de5692c AIRAVATA-2335 Instead of default of 0, use NOW() for UPDATE_TIME
new d581d4e Replicate addUser in Registry
new 06ec555 Move db-event handlers before registry server start
new be2c940 Change sql filename to expcatalog-mysql in DatabaseCreator
new 5100c07 merging master
new 2ff3d63 Moved publisher subscriber start logic inside thread
new 394efe6 Addition additional logging to sharing service DB event handler
new b5b5125 Added TENANT to a constant list of publishers for sharing service
new 4efff28 Adding gateway creation dependecies in sharing
new 4ec2823 adding KeyCloak based security manager
new f0d8331 removing the public method
new 048a11b merge remote branch
new c48a8ff Fix: hardcoded db-script name, Add: utility method to get filename given a directory path for db-script
new c231e53 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new 030468d Add new module: services-security
new c14db59 Stop registry-server if db-event handlers fail to start
new 5808332 Moving db event service starup logic after server start
new 45ecfa3 Send ack for db-event message after processing in Registry
new d1792cc Moved trnant creation under CREATE case
new a90e9bb Adding initial scigap production Ansible inventory
new bacc2bf Set domain-id as gateway-id instead of name in SharingRegistry
new 0e9c08f Reduce bound for randomly generated ID values in samples
new 6e5530c Add code for airavata-services security
new 7958a0f updating apache parent pom
new 71d67f1 Merge remote-tracking branch 'origin/master'
new d82842d Updating license headers using license-maven-plugin
new 83ea630 excluding thrift generated code
new defbad3 Temporary fix for mysql-selinux issue
new e440a96 ansible database role: Must be root to run yum install
new 2e90368 excluding ansible vault from license header
new 9e1958f Adding posix mode needed by assembly plugin upgrade
new 382e3cb AIRAVATA-2335 Putting real gateway datastore id in testdrive config
new 30ab06f fixing issue in updating sharing data models
new 41b61cf Add new DuplicateEntryException datamodel
new 66afcef Add new DuplicateEntryException datamodel
new 33388b4 Throw DuplicateEntryException in addUser(), when user exists.
new 2c16c71 Throw DuplicateEntryException in addGateway(), when gateway exists.
new 7ba98fa Manually refactor Supuns changes to getUpdatedObject from develop branch
new eff24f1 Change DuplicateEntryException catch-block logger to warn instead of error
new de241d6 Replacing sharing exception with Duplicate entry exception if entity already exists
new 9a3f195 Handling DuplicateEntryException in sharing DB event handler
new f17d5f5 Modify SharingRegistryService to throw DuplicateEntryException
new 0869c47 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new a26520d Modify RegistryService to throw DuplicateEntryException
new 63206c9 Adding duplicate entry exception to method signatures
new e46bc75 Change RegistryServiceDBEventHandler to catch DuplicateEntryException
new 057e4e1 Merge branch 'user-profile' of github.com:ajinkya-dhamnaskar/airavata into user-profile
new 5f2160d Adding data model dependency in sharing registry stub
new 749a84d Various fixes for gf{5,6} environment
new ebd55e9 Remove sysout statement in registerserverhandler
new ca9f938 Ansible handling of Apache SSL config
new dc55333 Add api-orch SSL port to firewall config
new 2e6437a Added PGA theme checkout, config to ansible role
new cda1172 temp data store for gf4 for testing; install pga ssh key
new aa0358c Add security-check to profile-service apis - user, tenant
new e597eb5 Add @SecurityCheck annotation to UserProfile and TenantProfile service handlers
new e572553 Add services-security project dependency in profile-service-server
new 52dd9bb Use AuthzToken (empty_token) in ProfileService client samples
new 5bbecff Send authztoken to userprofile-service methods within AiravataServerHandler
new db00041 Merge pull request #1 from apache/develop
new b156320 Merge pull request #2 from apache/user-profile
new 5946869 Commit to user-profile after resolving merge conflicts with develop
new ecdacd4 Resolve merge conflicts after merging ajinkya:user-profile with gourav:user-profile
new f682cac Update secutiry-services pom to reflect correct parent
new 65c71cf Fix compile error in SharingRegistryServerHandlerTest
new 837e249 adding ansible playbook for keycloak configuration
new 4eb4bc3 changing the sharing catalog db scripts
new 67eed40 Reorganized pga config files into include files
new 22e9798 Added scigap pga config; for testing using SSL on beta subdomains
new 7f8272d scigap prod pga configurations for a iu, phasta, etc.
new 1bf6e77 More pga configurations for scigap production deployment
new 6c38ebb Adding Sharing Registry back to all/api-orch server lists
new fc9b8f2 Adding goshenoy@apache.org to developer list
new ab6d02d Adding Ajinkya Dhamnaskar to pom.xml
new 9578e5c AIRAVATA-2363 Removing slf4j bindings except logback
new dca8e14 AIRAVATA-2363 Switch to logback for logging
new 3a963d7 adding support for standalone/hacluster/sslcerts & tested
new dc24945 SELinux enabled PGA install
new dd5e9c1 gf4 user data directory is now at /data/gateway-user-data
new 82e39d8 Allow user_data_dir to be symlink
new 8be77fd Add name including gateway_id to pga play
new 2afa065 search Data Products By Name in replica catalog
new 803d5ea adding searchByName data products in registry catalog
new 64fb9df AIRAVATA-2352 Redirect stdout/stderr to log file
new eadbdba AIRAVATA-2352 Log error when RabbitMQ client connection is shut down
new 2923dd2 adding configurable cluster status monitoring option
new e3009f5 adding configurable cluster status monitoring option
new 65bb986 adding boiler plate code for iam admin services
new d365175 AIRAVATA-2371 Derive OpenID Connect config from realm
new f4c5d67 Merge branch 'keycloak-deployment' of https://github.com/anujbhan/airavata into develop
new 05d39e5 removing the NULL file
new e74625d Upating south dakota ssl cert
new af6ca9a Moving log file out of distribution directory
new 00efec7 Update PGA configs for production
new 2cf1e9a Updating database names for scigap production
new 950309c Creating log files directory
new 1794197 Update gateway storage resource id to new one for gf4
new cad8418 Groovy template updates to match XSLT updates for campus gateways
new 1565881 Make portal files owned by unprivileged user
new 2fb19efc fixing bug in project and experiment search when the list is empty
new f8e55d3 dREG PGA configuration
new 57cb2ae Adding mason email address to gfac config
new c99687f Ultrascan pga configuration
new 6791f28 Disabling data sharing for Ultrascan PGA
new 056ae0a updating themes for two more gateways
new b37882a AIRAVATA-2246 Reorder structs by dependencies
new b6312d9 updating simvascular ssl certs
new 4d49798 adding iam-admin-services-core files
new e0fbdeb generating thrift classes for is-admin-services
new 28ab7a4 change in cpi and serverHandler
new 43c6736 checking sharing is enabled
new be5ef40 adding user profile service to server module
new e48a02e merging upstream
new 4407f82 Revert "adding user profile service to server module"
new 94f8748 adding boiler plate code for iam admin services
new 1a977c0 adding iam-admin-services-core files
new 2190091 generating thrift classes for is-admin-services
new ea0f1fa change in cpi and serverHandler
new e478ba6 regenrating thrift classes and minor changes
new 63a797b resolving conflicts with upstream
new a907317 making trivial change to test ansible
new 10d7c02 Adding default vhost config
new 7a77993 Merge branch 'master' into develop
new b6fb0b9 Fixed bug with copying default.conf virtual host
new beb3b43 Adding SLURM email address for jetstream.chemcompute.org
new 8327c29 boiler plate code for keycloak admin client
new ec35622 adding keycloak userstore migrator
new 161680d adding pom file missed out in last commit
new 7d97f73 removing installCert
new a97bb13 Disabling dreg gateway in main scigap pga hosting env
new 686d8e3 pull request review implemented, adding reset pass and find user api's
new 96bdea2 minor change
new 24f8b7f Temporarily disable WSO2 IS SSL verification and API security
new 45e8f65 Moving dREG gateway to Jetstream; fixed selinux file contexts
new 269d2ae AIRAVATA-2371 KeyCloakSecurityManager: getting token endpoint for realm
new 64b5570 Updating dREG storage resource id to actual Jetstream one
new 66c2098 Merge branch 'is-admin-services' of https://github.com/anujbhan/airavata into develop
new 538135f AIRAVATA-2371 Prefix api method with "/airavata/" namespace
new 2870924 removing old user profile
new f523527 using security classes from the services security module in airavata-services
new 7699ea0 Fixed bug with copying default.conf virtual host
new 703c853 Updated config for Keycloak
new f46b19e AIRAVATA-2371 switching to Keycloak security manager
new d81d3ad AIRAVATA-2342 Updated PGA deploy for Keycloak
new 81a5f2b AIRAVATA-2371 Updating client truststore with InCommon RSA CA cert
new 54e640c fixing compilation failure
new 57dc767 AIRAVATA-2371 Adding profile service to api-orch, ansible
new ddb95c1 Add Tenant Profile Thrift Model
new 9fab627 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new d37c9d2 Use firstName, lastName in KeyCloakImpl
new 3dae704 adding php namespace
new 93e1811 Merge remote-tracking branch 'origin/develop' into develop
new b5984b0 AIRAVATA-2371 Updating Keycloak package; adding profile service to distribution
new e6eb0c9 removing mongodb user profile configuration
new 4b0a9ec Merge remote-tracking branch 'origin/develop' into develop
new 5303a35 AIRAVATA-2371 Fix profile service properties
new a61aab4 Updating Ultrascan data store resource id and ssh key
new 868fc55 Removing dREG config for gf4 deploy; it's now on Jetstream
new 0fcce56 fixing bug in moving checkpoint files
new 04abb1e fixing bug in parentPath dir
new 7027f44 fixing bug in parentPath dir
new 1108b57 fixing bug in moving checkpoint files
new 010b133 fixing bug in parentPath dir
new a76825c fixing bug in parentPath dir
new 3a82e02 Copied ssl.conf from mod_ssl v 2.4.6, release 45.el7.centos.4
new 2265cbe Disable SSLv3 in all virtual hosts to prevent POODLE attack
new 0710b1c Ansible: setting profile service host and port
new 3f40431 Add generation of PHP Profile Service stubs to script
new d0f3f5c Dependency tweaks for the IamAdminServices Keycloak client
new f5a4e9d Remove references to userName and instead use userId
new 317bece Instructions on how to install ansible in virtual environment
new b1ed4ca Add fname, lname, mname, prefix, suffix to userprofileentity
new 31a6705 Fix walltime calculation for LSF
new 44f9493 Merge branch 'lsf-walltime' into develop
new 9ef0820 LSF job id parsing checks if there is job id before parsing
new 7b48f15 Fix LSF walltime calculation when taken from JobSubmissionTaskModel
new a1c3e83 Merge branch 'lsf-walltime' into develop
new 8310de5 Merge branch 'lsf-walltime'
new 5f8d5c6 Updating test keycloak integration deployment
new e1a9ab4 AIRAVATA-2371 Updating to new name of authz.cache.manager.class
new e65d9d7 adding nanoconfinement to gateway deployment
new 940e0ba Replicate gateway information if APPROVED in addGateway()
new 58ea1bf AIRAVATA-2342 Simplifying resetUserPassword interface
new 56bc4be making database level changes for supporting custom node/cpu/walltime configurations
new e988672 updating the resource layer to support new custom node/cpu/walltime configurations
new 9f57e1f Merge remote-tracking branch 'upstream/develop' into develop
new aa68a44 Removing older reference to usr-profile-stubs
new 1cfda99 Removing airavata-commons refrence from itself
new 78a3caf Renaming user-profile-stubs to profile-service-stubs
new 8462205 Changes related to profile-service-stubs
new 706e01d Code clean up
new 11f12df adding few more configurable parameters to the BatchQueue model
new d71c2aa merging airavata pull request 110: Airavata build failures
new f19cc0c AIRAVATA-2371 Initialize trust store for IamAdminServices
new f6f2adc Updated Oracle JDK url
new 701f36a Merge branch 'master' into develop
new cb27490 adding new API method to get the group memberships for a user
new 0a6afd1 adding missing file
new 0eda7d2 AIRAVATA-2342 Setting up trust store for Keycloak ResteasyClient
new ff0ccae AIRAVATA-2342 Cleaning up dependencies for Keycloak client
new df6cfd7 AIRAVATA-2342 remove UPDATE_PASSWORD required action when reset password
new 84c2fdc AIRAVATA-2342 Add profile service port to ansible pga_config.php
new fa7468a adding a new Email parser to handle SIU peculiar failed email state
new 1fab963 adding new resource manager type to handle SIU UGE.
new a9c4ba1 rename job manager type
new d8132b7 hacky way to handle SIU Little Dog EMail issue
new 64ea7ee hacky way to handle SIU Little Dog EMail issue
new c076a56 AIRAVATA-2402 changes needed to be able to run MigrationManager
new 020ecae AIRAVATA-2402 For testing migration, code to recreate a tenant
new bd526ad AIRAVATA-2402 Migrate user roles to Keycloak
new 7157992 AIRAVATA-2423 Properties file for migration config
new 1c320eb AIRAVATA-2423 Configuration of custom role names
new eeea42e AIRAVATA-2422 AIRAVATA-2427 Not migrating locked accounts
new 504f839 Add AiravataInternalGatewayId to GatewayEntity in ProfileService
new c26f289 AIRAVATA-2431 Allow duplicate emails in Keycloak realm
new aa15344 Auto generate and set UUID for internal_gateway_id in GatewayEntity
new 59ca27b Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new 98ec4bf Checking for duplicate gateway request
new 9a31410 returning meaningful error messages from the sharing service
new 83102ed AIRAVATA-2431 Migrating Gateway and IAM Tenant also
new ff3fc16 AIRAVATA-2431 fixing typo
new 8341d49 AIRAVATA-2432 Using Docker to run Thrift
new de45cba AIRAVATA-2431 Fix creating Keycloak admin user
new ffbf329 AIRAVATA-2431 Ansible: update PGA for test seagrid
new 0a59ba0 AIRAVATA-2432 Add --native-thrift to stub gen script
new f52024f AIRAVATA-2431 Add admin user to 'admin' role
new da720e3 AIRAVATA-2431 Fix adding admin user to "admin" role
new 29718e0 Making required changes
new b3e0754 Modified TenantProfileRepository.java to pass paramenters to the query
new f089bb1 AIRAVATA-2431 Ansible test deploy for user migration
new c0c585f AIRAVATA-2408 Updating PHP namespace for profile services
new 3eb804b AIRAVATA-2408 Adding simple validation query for profile service
new b3338ce Merge branch 'thrift-docker' into develop
new b1c390c AIRAVATA-2408 Propogating user profile update to IAM server
new 7f3a939 AIRAVATA-2408 Fixing authz token claim verification
new b45fac7 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new da4a570 Moving composer update after permissions update
new 4e7d7cc AIRAVATA-2408 Updating Keycloak when user profile added
new 883c3f4 updating nanoconfinement url
new e061361 AIRAVATA-2408 Remove user profile service methods from API
new 7ff7130 AIRAVATA-2376 Add millisecond precision to TIME_OF_STATE_CHANGE
new 047521f AIRAVATA-2376 Switch to MariaDB jar in Ansible
new 251070b removing script from PBS script
new 1279779 Dev SciGaP deploy (WIP); updates to Keycloak role
new 93fa1f7 Merge branch 'AIRAVATA-2376' into develop
new 2b7a9a3 AIRAVATA-2376 Switch to MariaDB for Profile Service
new 35c7cdf AIRAVATA-2438 Lower case user profile user id/internal id
new 2075f41 Ansible - keycloak for dev SciGaP deploy
new 0429d37 Ansible - airavata servers for dev SciGaP deploy
new 225b09c MigrationManager: allow connecting to secure Airavata
new 9a27385 Adding spaces between terms in Tenant Profile queries
new 8b803d7 Null check query for dup gateway
new 3b80b59 Assign UUID to gateway when creating
new 649d579 Bringing client_truststore.jks in Ansible inv. up to date
new ae2e0e6 Removing unused remote.idp.service.url, using iam.server.url instead
new 3ed7880 MigrationManager: populate claims map for adding user profile
new 555eb6b Setting up Keycloak admin user and gw resource profile
new 3424248 PGA configs for dev.seagrid.org, dev.scigap.org
new b24d60f Ansible configuration for PGA airavata-profile-service-server
new 13ed71f Setting gateway storage resource id for dev.seagrid.org
new 14bb432 AIRAVATA-2403 Simplifying IamAdminService methods
new 78f0895 AIRAVATA-2403 Adding user role management methods
new f0f6b34 ignoring unresolved wildcard files
new a445590 Merge remote-tracking branch 'origin/master' into develop
new 2800689 AIRAVATA-2430 Ansible template/vars for PGA auth options
new 24b869a AIRAVATA-2430 Ansible config for external idp logo option
new a9d2771 AIRAVATA-2405 IamAdminService method to get users in role
new cd230e2 adding queueSpecific macro support
new 0479066 AIRAVATA-2405 Fix getUsersWithRole
new e9b4276 Merge branch 'AIRAVATA-2376'
new ec62e68 Adding USD cluster email
new 11e80b0 removing pbs script comment
new d8c4f45 Adding PBS email address for LSU cluster
new 2b92f65 AIRAVATA-2453 0.17->0.18 DB migration scripts
new cb4565d Duplicate check query for gateway requests
new 9792d27 AIRAVATA-2419 Enable security in dev environment
new de6fcb1 AIRAVATA-2419 Save admin credentials when migrating
new ec20fe5 Migrated dev.testdrive.airavata.org
new b8449f5 Add logout redirect URL when setting up Keycloak realm
new 67e8b52 AIRAVATA-2419 Adding getAllAccessibleUsers to role permissions
new 32e47de [AIRAVATA-2421] Clear EntityMangerFactory cache when creating EntityManager
new 0d93a45 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new f1f3712 [AIRAVATA-2421] Add null check before clearing EntityManagerFactory cache
new aadaa25 handling multiple file transfers for wildcards
new 51005a1 merge
new 0f643e4 AIRAVATA-2419 Add getAllApplicationDeployments to gateway-user role
new 30a0132 AIRAVATA-2419 Add *ByAdmin methods to admin-read-only role
new fa89244 AIRAVATA-2419 Add user resource profile methods to permissions
new 2e667f2 fixing issue in widlcard output file transfer
new 867135d merge
new 94508b6 more logging for debugging
new 2a00dd2 AIRAVATA-2419 Add sharing resource methods to permissions
new a860fd9 WIP
new 66d98bc adding user profile client, which was accidently deleted in last commit
new 324a9f7 merge
new 4691113 AIRAVATA-2470 TenantProfileService look up gateway by internal id
new c48982d AIRAVATA-2470 Returning all of requester's gateways
new 48995ea Updated production SciGaP deployment for Keycloak migration
new 042ecf7 Removing cinetvtech
new 601a65d Updating production scigap hosts
new 1ecce70 Updating production client_truststore.jks
new fc09a35 Updating client id/secret from Keycloak
new 70fd7b1 Updating production pga configs for beta deploys
new 037a8d1 Adding dependency needed for SELinux management
new 6c2d7c5 fixing issue in creating new process and experiment outputs
new d955465 merging origin
new 165538f Set email verified for admin account
new 5ab0dc9 using gateway level credential store token for storage resource
new 47f57e7 merging origin branch
new 295d50e Updated gateway data store id for beta sites
new 160f70e Allow admin-read-only to call getGateway
new b7e06da AIRAVATA-2471 AIRAVATA-2419 Allow users to generate ssh key for profile
new 4e4a639 AIRAVATA-2471 AIRAVATA-2419 Allow users to get credential summaries
new 774b4c9 AIRAVATA-2471 AIRAVATA-2419 Allow users to delete ssh keys
new 9ba8954 Keep Ultrascan PGA on 0.17 branch for now
new 8e05950 Updating Keycloak client id/secret
new d3bc3b6 [AIRAVATA-2421] Clear the EntityManager cache
new a0c6b89 Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata into develop
new ee6e3da Some updates to pga configs
new f169bb1 Production scigap url updates, pga configs
new 217fa0f Updating storage resource id
new cd34c55 Updating pga config for Ultrascan, still on 0.17
new b062491 all owners are treated as equal
new 7af2047 all owners are treated as equal
new d49fcd7 removing last commit: all owners are treated as equal
new 983225c removing last commit: all owners are treated as equal
new 704ba66 fixing untaring issue in archive task
new b5a597e AIRAVATA-2453 lowercasing USER_GROUP.GROUP_ID also
new 6c46dfe Merge branch 'keycloak-prod-migration' into develop
new a8e99e8 Adding CILogon to scigap
new 45bbc25 AIRAVATA-2405 Search only most recent users for role
new 226cd3f AIRAVATA-2405 getUsersWithRole debug logging
new 86713ee AIRAVATA-2405 getUsersWithRole test
new 5d4d105 AIRAVATA-2405 loading all users in batches
new 5baf04d Adding SIU theme
new 101a687 adding accord and nanoshape gateways
new d03c724 Ci Logon integration
new e72ddf0 Adding DBEventManagerRunner to server start
new 33a601f Start DB Event Manager before other servers
new 1463341 May not get Gateway CREATE event so add DOMAIN on UPDATE if not exists
new aff5156 Sharing DOMAIN has DOMAIN_ID that is the same as GATEWAY_ID
new 2aab0ea Updating Accord admin username
new 03d6918 Setting SSH keys for Accord, Nano Shape gateway storage
new c8ee09c Using parameter binding to handle single quote in proj/exp names
new 1492fdc Putting Utah PGA on develop branch for Keycloak/CILogon integration
new 75edff6 Georgia Tech Ansible Script
new 632b76a Merge remote-tracking branch 'origin/develop' into develop
new f43c761 Georgia Tech Ansible Script
new 461fdbb Ansible: Georgia Tech ssh key
new 89e7e7f Parameter binding for sharing registry queries
new fa868f5 UAB and NMSU Gateway Ansible Scripts
new 8df51da Merge remote-tracking branch 'origin/develop' into develop
new a0a66dc new-mexico-state and alabama-birmingham ssh keys
new fe6e9a2 orderby clause in experiment search
new edd1dbb merge
new 7307b31 orderby clause in experiment search
new f386e38 fixing bug in sharing registry
new e7e7771 updating some of the group management API methods in AiravataServerHandler
new 1f35ede UAB and NMSU Gateway Ansible Script updates
new d49f252 PICKSC PGA scripts
new 36edde6 Switching branch before merge to master
new 6d6973d adding sharing php and python thrift generated code to language specific sdks
new ad013e0 adding TLS mutual verification support for Sharing Service
new 21a7505 Merge branch 'prep-master-merge'
new 0f03a85 Switching branch before merge to master
new fe2bc6e Adding sharing.tls.enabled to ansible scripts
new a0d83fe Open firewall for sharing registry port
new 67f6fad Added Diana's email to admin emails
new 0d9d152 adding comment to the sharing reg. tls enabled configuration
new 92efa1b setting domainid from domain name
new c171c67 sharing server require client auth
new 84e8eef fixing AIRAVATA-2506: Treating airavataInternalUserId as the userId for sharing registry service
new 8e77566 AIRAVATA-2505 Upgrade Airavata to Thrift 0.10.0
new b279904 AIRAVATA-2507 Change access token, sso idle session timeouts
new a7573b2 Merge branch 'AIRAVATA-2507' into develop
new ccd2518 Update Ansible deploy for dREG gateway (Keycloak migration)
new b182ca1 fixing minor issues in local fork job submission
new efa619b fixing bug in initializing user profile in the sharing db event handler
new 1a5cf4e adding more log messages to SCPThirdparty file transfer method to track down failures
new 2f471d1 Added WVState University gateway directory
new 862c25b Added IU Geology Survey Group gateway directory vara.yml
new 5ad4734 Added IU Geology Survey Group gateway directory vault.yml
new 8f57d7c Changes to the vars.yml, added the key for data storage access
new 4b1c437 Changes to the vars.yml, added the key for data storage access
new d537890 Changes to the vars.yml, added the key for data storage access
new 6488090 UAB CILogon config
new c3262a0 adding INPUTS_ALL to the groovy map
new bb3d478 setting export commands to the Groovy context
new 34e1c0e removing extra export
new 2512037 Added Antony's email and sgrc mailing list for notifications
new fd8f207 Added Antony's email and sgrc mailing list for notifications
new 0822efc Added Antony's email and sgrc mailing list for notifications
new 4f1122d Merge remote-tracking branch 'origin/master'
new b0beb30 New NCSA Gateway vars.yml
new ba7dcd3 New NCSA Gateway vault.yml
new e74f781 Added new NCSA Gateway
new 8f358c4 Add CILogon to SimVascular and NCSA-Industry
new ce376aa Add template inventory directory, updated README and cleaned up inventories
new f2e5f0d Merge branch 'master' into develop
new 16d5920 Added Alison's email for admin notifications at user account creation
new 5d49548 Added Anita's email for admin notifications at user account creation
new d31d1cc Added SGRC group email for admin notifications at user account creation
new 0ad3fdd Added SGRC group email for admin notifications at user account creation
new 19f120c Added SGRC group email and Sai's email for admin notifications at user account creation
new 6859974 Added SGRC group email for admin notifications at user account creation
new 8041bf8 Added SGRC group email for admin notifications at user account creation
new 8d38de8 Added SGRC group email for admin notifications at user account creation
new 1005e87 Added SGRC group email and Cameron's email for admin notifications at user account creation
new aaf4749 Added SGRC group email or admin notifications at user account creation
new 666bcdf AIRAVATA-2505 merging thrift 0.10.0 upgrade branch
new 817b637 Updated iugeosurvey pga config with theme
new 73cf9e1 Adding CILogon config for NMSU
new 6c0786f Fix IU Gateway CILogon Keycloak hint
new e0b64eb Change label of CILogon auth option from "CILogon" => "IU CAS"
new 52d9238 AIRAVATA-2508 Set admin password in Keycloak, gateway profile
new 1c39e2e AIRAVATA-2500 Initial interfaces, APIs for account provisioning
new 77baac4 AIRAVATA-2500 Implement SSHAccountProvisionerFactory
new 2a90139 AIRAVATA-2500 Update thrift API and regenerated
new 3d161b8 AIRAVATA-2500 SSHAccountManager: install SSH key and verify
new 8c748c6 AIRAVATA-2500 Add creation of scratch location
new 0d1e90f AIRAVATA-2500 Finish implementing SSHAccountManager
new 8f2f135 AIRAVATA-2500 Implement doesUserHaveSSHAccount and setup SSH account methods in API
new 722aabd AIRAVATA-2500: generated Thrift stub code
new ac2823a AIRAVATA-2500 Persist SSH account provisioner and config
new 469a7e7 AIRAVATA-2500 Thrift stub generation
new 643d35b AIRAVATA-2500 Implement API method to get provisioner metadata
new 3184c23 AIRAVATA-2500 Thrift stub code generation
new 31f3906 AIRAVATA-2500 SSHAccountManager bug fixes
new 71d33ea AIRAVATA-2500 Added additional info field for SSH Account Provisioners
new fab1900 AIRAVATA-2500 Thrift stub code generation
new 1c2ab27 AIRAVATA-2500 Partial Implementation
new 7437112 Integrate IULdapSSHAccountProvisioner with fixes
new 66689a8 AIRAVATA-2500 Improved error handling, error messages
new 2425187 AIRAVATA-2500 Javadoc for SSHAccountProvisioner interfaces
new 42059ec AIRAVATA-2500 Disallow overwriting LDAP SSH key
new 8f68bc1 AIRAVATA-2500 Adding try/catch around doesUserHaveSSHAccount
new 596eb5b AIRAVATA-2500 Fix bug deriving ssh hostname
new 20fc3fd AIRAVATA-2500 Add 'validated' flag to UserComputeResourcePreference
new e5dcade AIRAVATA-2500 Thrift stub code generation
new 29fedaf AIRAVATA-2500 fixing order of arguments
new ba4982c AIRAVATA-2500 data migration for new validated flag
new 50d7bb6 AIRAVATA-2500 Returning/using username of cluster account
new ebdf897 Merge branch 'AIRAVATA-2500' into develop
new db2a682 adding a place holder for allocation manager
new de6faa3 AIRAVATA-2500 Add new methods to API security
new 430001c Merge branch 'AIRAVATA-2500' into develop
new a27a829 Merge branch 'AIRAVATA-2508' into develop
new 124558d AIRAVATA-2517 Keycloak MySQL conn. validation
new 95cb204 Merge branch 'AIRAVATA-2517-keycloak-mysql-connections' into develop
new 5c12e94 AIRAVATA-2517 Applying Keycloak MySQL config to HA too
new 784d3de Adding new Kentucky gateway
new b8aaabc Merge branches 'AIRAVATA-2507' and 'AIRAVATA-2508'
new 8223d51 AIRAVATA-2521 Custom gateway level max values for Simvascular
new 1a6606f AIRAVATA-2558 Fix paging for getUserProjects
new 72cfc64 Adding new Kentucky gateway
new 4a2b956 Adding new Kentucky gateway
new 7b0cc0b Ignore backup files (from emacs, etc.)
new 5f04191 Merge branch 'master' into develop
new 970dc68 Log exception with stacktrace when API server fails to start
new 5bf7fce Merge branch 'master' into develop
new 857b99b Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata
new 8c8ad8b fixed the auth client secret typo
new 15a8d36 New Ultrascan gateway with production SciGaP
new e016b85 Added new Ultrascan gateway with production SciGaP
new 7ca2145 Added new Ultrascan gateway with production SciGaP
new f392b8d Added Nathon's mail to admin emails
new 6aa1195 Added CILogon to kentucky gateway
new eb44aac Fixed a typo in added CILogon to kentucky gateway
new e1bd58f generating profile service stubs with dashboard customization attributes
new 4988f92 generating profile service stubs with dashboard customization attributes
new f26ea4c Adding new JPA entity for custom dashboard
new 8679ab5 Reverting services related to custom dashboard
new ac23b72 Reverting services related to custom dashboard
new a68ff57 Initial API server framework
new 4d51329 Generated PHP SDK client changes
new 8579f2a Workaround PasswordCredential being a subclass of SSHCredential
new 23a1bf7 Merge branch 'credential-store-get-summaries' into develop
new c3644ef Implementing Experiment and Application creation APIs
new 44553b9 Change repo urls to github
new 96840a7 Merge branch 'master' into develop
new 9935b6b Fix compile error
new be02824 Merge branch 'credential-store-get-summaries' into develop
new 98afe91 Implemented Orchestrator to accept messages from launch queue and create tasks and processes for experiments
new 90f67ff changing Xbaya to pga
new c4a3a05 Adding task microservices for each task type
new e96bced Adding task microservices for each task type - v2
new f800a63 Support to async task execution to avoid task being executed by the kafka consumer thread
new 04f88bc Publishing events of a task to a single partition to achieve ordered delivery
new 14a62f9 Implementing the event sink to perisit task states to the database
new 56bb2fa Compute resource operations to decouple the communication between tasks and compute resources
new fa3a242 Restructuring modules and fixing docker builds
new 4268067 Exposing port 8080 of api-server container
new da921e9 Adding kubernetes scripts to deploy microservices on kubernetes
new 549ae48 Adding API server endpoint to accept process status
new 4e27cb5 Adding get all method to API server resources
new e1e09b8 Web console initial commit
new 2d18e15 Adding Experiment and App Interface creation functionality to Web Console
new e1d73b5 Adding Experiment detail pages
new 95fb8d4 Added task event view console
new 4f19f5c Adding setup page to configure API Server endpoint
new 9b8c097 Fixing bugs in task execution processes
new cb4438f Uploading experiment outputs to Data Store
new 421fd4a Docker file to build console docker image
new 7b16ba6 Externalizing db username and password
new 67de113 Minor improvements
new 6b8c79d Added a new test gateway with develop airavata server for SGA class student project
new 737c290 Merge branch 'master' of https://github.com/apache/airavata
new 2a3302c Added a new test gateway with develop airavata server for SGA class student project
new 70076aa Adding dependency management
new 35ef652 Adding license headers
new 3077522 Updated readme
new 88acdf1 Merge pull request #135 from DImuthuUpe/master
new b7159b0 Revert "Container Based Task Execution Workflow for Airavata"
new f1fc62d Merge pull request #136 from apache/revert-135-master
new 5e7e5c5 AIRAVATA-2500 Trim public key before storing in LDAP
new 6885a26 Merge branch 'AIRAVATA-2500' into develop
new cb0b5ef Change text on CILogon button for dev seagrid
new b73cf69 Merge pull request #130 from sachinkariyattin/develop
new 2269b50 Adding README for profile service
new 3451a63 AIRAVATA-2581 Rename python package `apache.airavata` => `airavata`
new 084227b Updated README
new 249111f Fixing typo
new eec7b76 Merge branch 'AIRAVATA-2517-keycloak-mysql-connections'
new 0ba2ddb Disable sharing in new ultrascan portal
new b74c1c5 AIRAVATA-2590 Only add processPerNode if there is a jobSubmitterCommand
new c663745 Initial commit for the pull request
new 2c55c4b generating thrift stubs for Owner and Admin models
new 07d4d8e generating thrift stubs for Owner and Admin models
new c04861f Adding repository classes and entities
new 6dfa6f2 Adding repository classes and entities
new 8cc934f Adding handler method definitions
new 03dbe9c Adding repository methods
new 342cc26 Adding transferGroupOwnership method
new 35cd0f5 Deleting the temp read me
new 2f84474 Fixing owner entity
new bc8d76f Renaming models
new 027af88 Merge pull request #141 from sachinkariyattin/group_roles
new 3e21d49 Merge pull request #137 from sachinkariyattin/profile_service_readme
new 2a7f51d Deleting GroupOwner model
new 3908471 changing monitoring email
new 8aa2c45 Adding gfac.yml playbook for updating gfac only
new 84ddb3a AIRAVATA-2608 Fix Zookeeper download url
new ccb09a9 AIRAVATA-2608 totalSizeCap of 1GB on airavata log files
new bae2f2f AIRAVATA-2608 Keep at most 30 archived log files
new 27ea5d5 Google Analytics ID in ansible pga_config.php template
new d802360 Added SIU big dog email and jetstream email in to the production config
new 27cde9d Fixing workflow_catalog typo
new 0e35b48 changing ultrascan gateway to point to production stack
new 236455f temporarly adding dev ultrascan to point to gw153 airavata, this will soon be removed.
new bc5d4c8 Initial commit for the pull request
new 206abb8 Generating thrift stubs for group manager
new 8810c04 Adding API methods GroupManagerServiceHandler
new 5f65d4c Using autztoken to get gateway ID
new ab467ac Reverted dependency on api-server, added ThriftClientPool class for profile service
new ea0eb0d Removing hardcoded project version from pom
new fa2afd8 Removing API methods from AiravataServerHandler and correcting build errors
new e759204 Reverting README changes created for intital pull request
new 5e36ed3 Reverting README changes created for intital pull request
new a7f24b6 Adding SecurityCheck annotation
new f51745f Using regular client instead of ThriftClientPool
new 0fb711c Adding tests for group roles
new 4ec92a7 Adding GroupManager client sample
new 6cee9a2 Merge branch 'google-analytics-ansible'
new edf1783 Merge branch 'google-analytics-ansible' into develop
new b5d2d37 Remove local state from SCPDataStageTask
new dedbfc9 AIRAVATA-2571 Set emailVerified=true when user is enabled
new 7a9164f AIRAVATA-2571 Use `state` field to indicate if Keycloak user is enabled
new 41d371b Merge branch 'AIRAVATA-2571-email-verified' into develop
new 87d323c Log error when failing to execute groovy template
new d70f9af Updating email addresses in gfac-config.yaml
new c43640f Adding Searching SRA gateway
new 274da25 Merge remote-tracking branch 'origin/master'
new 807e1e7 Adding Searching SRA gateway record to the file
new acf3a49 Added the public key generated by the gateway to the data store
new 1d69f66 Added google analytics traching ID for USD gateway
new 625732d Added google analytics tracking ID for testdrive gateway
new e9d64b8 Added google analytics tracking ID for dREG sequencing gateway
new 8632150 changing dev email address to devjobs
new a73ba7b changing dev email address to devjobs
new 15cc7fe added SSC gateway URL
new 1044189 added SSC gateway details
new bcdd119 Merge branch 'AIRAVATA-2571-email-verified'
new 44dd8f1 added Rodeo VM details
new bd4c6d8 airavata PGA gateway installation parameters updated
new 5aec2a8 added google analytics ID
new 80da347 added google analytics ID
new 08f09bc added google analytics ID for SIU gateway
new 5a33b09 added google analytics ID for SimVascular gateway
new ac7330b added google analytics ID for SimCCS gateway
new e101d43 added google analytics ID for IU Cyber gateway
new c13c0c2 AIRAVATA-2608 Upgrade logback to latest
new 6c1478c Fixing AIRAVATA-2621
new dc6ea56 Fixing AIRAVATA-2624 Sampede2 cluster SSH connectivity issue
new 61b9684 Validating port value before overriding
new 766cbd8 AIRAVATA-2645 Add profile services to Python thrift stubs
new 0d77ff5 AIRAVATA-2645 Generate Python thrift stubs
new f13c17f Fixing AIRAVATA-2621
new 0237909 Fixing AIRAVATA-2624 Sampede2 cluster SSH connectivity issue
new 53888e1 Validating port value before overriding
new 0f25c2f Merge branch 'AIRAVATA-2621-bugfix' into develop
new 298fadf Added Stampede2 email for job monitoring
new 4a3ba81 Added Searching SRA Jetstream cluster email for job monitoring
new a24cf52 AIRAVATA-2594 Allow gateway-users to call getGatewayResourceProfile
new 964aaab Merge branch 'AIRAVATA-2500' into develop
new f4814b8 Implemented getAllGroupsUserBelongs
new bc22d0d Set ownerId when creating group
new 6f4ae17 Fix for setting ownerId on new group
new 3ecbd3a Merge pull request #163 from sachinkariyattin/develop
new 649bb66 Removed dependencies
new 179ad80 Fix unit test to read escaped keystore file path
new aff441a Merge branch 'develop' of github.com:apache/airavata into develop
new 4f4cbd6 Added new methods to registry api
new 0e58134 Changes to pom and exceptions
new feff039 Merge branch 'develop' of https://github.com/apache/airavata into develop
new 211691d Merge branch 'AIRAVATA-2590-uge_groovy-template-fixes' into develop
new 1692d9b Merge branch 'AIRAVATA-2590-uge_groovy-template-fixes'
new 6a600d0 Fixing Airavata-2143 : Experiments with overridden resource allocation details tries to use qos and reservation from community user
new 49c5b5b Providing high priority for process level queue name
new a44fa60 Merge pull request #166 from DImuthuUpe/AIRAVATA-2143
new f5aaf33 Changes to throw Runtimeexception
new ccfecab Merge branch 'develop' of https://github.com/apache/airavata into develop
new 3aee824 Merge pull request #164 from sachinkariyattin/develop
new a049148 lastUpdateTime is required on TaskModel
new a123fc0 AIRAVATA-2663 Include root cause when throwing new exception
new 4c80791 AIRAVATA-2664 Thrift client not thread safe; new one for each request
new 14ae202 AIRAVATA-2663 Fix NPE in createProcesses
new 73d52c9 AIRAVATA-2667 Throw error if JobModel not found
new 5091d6f AIRAVATA-2667 Remove global Registry service client in ProcessContext
new b26717b AIRAVATA-2667 Add isJobExist method to Registry API
new 0e2918a IRAVATA-2668 Using addExperimentProcessOutputs to update outputs
new 715bcae AIRAVATA-2665 Allow admin-read-only for getAllCredentialSummaryForGateway
new 665bed8 FIxing maven warnings
new 7477deb Travis: clone full repo for git-describe to work
new 1f39ac6 derbynet needed in compile scope (CredentialStoreInitUtil)
new 210cf43 Added GSU cluster email for monitoring.
new a09ed5e Added USD SLURM cluster email for monitoring.
new e271719 Regenerate GroupManagerService Python stubs
new 5e793c5 AIRAVATA-2672 Start Zookeeper as unprivileged user
new 9991e44 AIRAVATA-2672 Setting Zookeeper log directory
new e67ed30 Merge branch 'AIRAVATA-2672' into develop
new 8d4a65e Ansible changes for Airavata Standalone Server
new bf6ef8b fixing database transaction issue in creating password credential and improving ansible scripts
new 4da2c5f fixing minor issues
new 86a2908 Removing TestApplication
new 4f429ef Updating cloning url to original airavata repo
new 5f1e81f Reverting back to https urls
new 3a2e1be Adding missing placeholder
new d6fa1cf Removing admin email value
new 7eae3f9 Moving default gateway initialization code to api server
new 9f06e0f Minor improvement
new 1f5066a Reverting back to http urls as ansible does not trust mariadb ssl certificates
new 882722c Merge branch 'ansible-standalone' of https://github.com/DImuthuUpe/airavata into DImuthuUpe-ansible-standalone
new 37b06e2 Merge branch 'DImuthuUpe-ansible-standalone' into develop
new a544455 Use 'become' to open port 22 in firewall
new 49ff096 Remove registry client from credential store
new 04724f0 Merge branch 'DImuthuUpe-ansible-standalone' into develop
new 3c3345d Setting default pga_git_branch
new cce75c8 Merge branch 'DImuthuUpe-ansible-standalone' into develop
new 3be90c6 Use 'become' to open http/https ports
new 2ec3902 Merge branch 'DImuthuUpe-ansible-standalone'
new c9a1b06 Initial helix migration
new ef94a5a Building groovy map
new 5144f67 Merge remote-tracking branch 'upstream/develop' into develop
new 508b895 Improving exception handling of GfacServerHandler
new b6c2e13 Merge pull request #175 from DImuthuUpe/develop
new 4338008 Fixing incorrect assignment
new 85c222b Merge pull request #177 from DImuthuUpe/develop
new b199bc2 Stabalizing DefaultJobSubmission Task
new 7124801 Removing some unnecessary RuntimeExceptions
new cb54e4d Fixing env setup task
new 7350b25 Implementing DataStaging tasks
new 573dbab Fixing bugs in pre workflow
new 4e1c1b0 Standalone email monitor initial implementation
new 42ff5f4 Implementing post workflow
new ca45564 Configuring pre workflow manager to read from rabbitmq launch queue
new 1c3a5d4 Improving status publishing
new f51f1f1 Thread safe entity manager factory
new 71075e0 Logging improvements
new 782b0e8 Refactoring
new 39a011e Adding Dimuthu's details to the pom
new 35847f9 Adding tilaks to Airavata pom.xml
new e864db3 Adding deployment module to helix workflows
new a726a98 Moving helix-spectator module to airavata-helix module
new 0053413 Moving helix-spectator module to airavata-helix module
new 71b294e Refactoring
new 0164795 Adding license headers
new 4e63595 Fixing travis build
new 59f4e58 Adding Sachin Kariyattin to Airavata pom.xml
new bc0016f Adding output file details to experiment output
new ab8435b Restructuring property files
new 07e8984 Merge branch 'develop' into helix-integration
new a03b8e5 Merge branch 'helix-integration' into develop
new 2c5f4c5 Listen line is resulting in duplicate with main httpd.conf
new 880e208 Merge remote-tracking branch 'origin/master' into develop
new ce6478e Adding archival helix task
new 1cb80a0 Registering archival helix task in global participant
new 1e090ff Implementing workflow level cancellation
new 5f182f0 Implementing job level cancellation
new 72bece3 Adding realtime job monitoring capability to monitoring framework
new 797027c Adding job id as the key of kafka message entity to make sure all message types for a particular job go to same partition
new 7b20506 Deleting status node before updating it
new 91f4fef Giving higher priority for files in config dir
new f25b2a8 Creating distribution for job monitors
new 403656f Refactoring helix task distribution
new 865d7a4 Updating the Helix module to use Slf4j logging
new 42176a7 Updating helix distribution to use logback
new df058b5 Supporting kafka logging for helix tasks
new ccf7e01 Migrating job-monitors to use logback logging
new ac53d8a Fixing logging configuration of daemon scripts
new 1a97414 Deleting temporary files created in Data staging tasks
new 8f7dc3d Adding consistent job submission, fixing zookeeper connection issues and logging improvements
new bf3943a Publishing process status as Executing once the workflow is launched
new 55747ca Printing the description of fetched credential
new a697180 Refactoring SSHAgentAdaptor
new 33bf5bd Using one RabbitMQ Channel for one thread
new c86a4ea Refactoring PreWorkflowManager
new b10c672 Making Status publisher global to all Tasks
new 2dc41b7 Using Clients instead of CPIs in Helix Tasks
new d042fd3 Synch commit support for kafka job monitor queue
new 03e0ec7 Moving ThriftClientPool to airavata-commons module as it is generic tool that can be used beyond API Server
new 7211467 Using the correct API to save experiment outputs
new bac92d0 Printing the experiment id when submitting a post workflow
new 721a55a Detecting zero byte files and ignoring data staging
new 623a87d Loading email config file from ApplicationSettings utility
new 66750af Handling Failed jobs
new 9d84826 Adding file exists api to adaptor
new e45108a Checking the existence of output file before transferring
new 7bb426a Checking the archive transfer status in ArchivingTask
new 06f8435 Checking full file path in validating file existence in SSHAgentAdaptor
new 2839c44 Simplifying helix distribution configs
new 0f07123 Failing input data staging if the file size is 0
new 01e0e70 Updating Helix core version 0.6.7 -> 0.8.0
new 8adb34e Removing duplicate dependencies and dependency conflicts
new 4cfca65 Using JobSubmission protocol as Adaptor protocol
new 1ce6d3f Improving error handling and adding error codes to easily track issues
new f912d39 In an experiment cancel request, marking the experiment is cancelled once the job is cancelled, completed or failed
new 1b950bd Graceful job cancellation if the Default Job Submission failed in middle
new 98b7d16 Making the Experiment as cancelled irrespective of the Job status.
new e26b66c Handling externally cancelled Jobs
new 5fa0cec Minor logging improvement
new 4836bdf Fixing the bug in wildcard supporting of OutputDataStaging Task
new a2acaac Adding sshj adaptor and replacing jsch adaptor for SSH communication
new d447052 Adaptor caching support
new 2d2f5ee Updating bouncycastle version
new 9b9a2c0 Initial commit of scigap staging inventory
new f070159 Don't give gfac db access if no gfac in hosts
new fe28ca9 Remove GFac config from api-orch airavata-server.properties template
new 42bd72f Merge pull request #189 from DImuthuUpe/rabbitmq-publisher-improvements
new c0e3978 Filtering deployments that are only related to the compute resource of process
new 68999eb Staging PGA Ansible config
new 8c7ba31 Updating Shutdown Hook Implementation for Helix Participant
new cc699a4 Use IP address (internal network) from API server to database
new e9baeec kafka ansible implementation
new dc035b1 helix-integration ansible changes
new 0f66b45 Merge pull request #192 from Lahiru-J/develop
new 5867892 Merge branch 'develop' into staging
new 021ff94 Merge branch 'develop' into staging
new 9999156 Simplifying email job monitor properties
new 15e8958 Merge branch 'develop' of https://github.com/apache/airavata into develop
new aea2b55 Fixing possible NPE when publishing process status
new 796ecbb Returning empty list in getSubmethods of AuthKeyboardInteractive
new ad72e82 Fixing ansible scripts to deploy staging helix distribution
new 0f2a1e5 Merge branch 'develop' of https://github.com/apache/airavata into develop
new 5f58b1b Fixing NPE when creating an Optional from null object
new d132bf2 Adding Requested Modifications to Shutdown Hook Implementation for Helix Participant
new e67ffd8 Merge pull request #195 from yasgun/develop
new 7a182e1 Forcefully making the job state as Cancelled once an Experiment cancellation is triggered
new e38fb06 helix setup service scripts
new 15c3987 Fetching the original task id which submitted the job when cancelling
new a3f1f47 Merge pull request #197 from Lahiru-J/develop
new 0bcf435 Closing ssh session before getting the status code
new da4503d Updating helix version from 0.8.0 -> 0.8.1
new 6ef6c03 AIRAVATA-2757 Set default charset for profile_service
new 5cf113d Ansible: staging PGA instances inventory
new 20cb5ce Ignore realtime monitoring commands on failure
new e91c302 Adding user resource profile to Task Context
new 9703d13 Adding missing emails in email monitor config
new cccdbf3 Fixing the bug of scratch location having a trailing file separator
new 6d8082e Setting user level compute resource preferences
new 341d3d9 Adding missing emails to email job monitor ansible distribution
new 39d81aa Merge pull request #194 from DImuthuUpe/develop
new f5aeb4b Merge branch 'develop' into staging
new 87b6b2f Minor logging improvement
new d5c2bdf Directing the stdout of curl monitoring commands to /dev/null
new 10749a7 Fixing broken helix download links
new 1d32f81 Updating Task Framework to support User Defined Workflow implementation
new 78a6fa9 Adding queue operator to handle Airavata task queues
new f3a316f Updating Queue Operator to become stateless, while adding additional logging, and performing variable name changes
new 3a7f7f1 Updated JavaDocs and added operator level validations
new b2395fe Fixed the issue with participant re-enabling when coming back to the cluster after a graceful shutdown
new befba32 Added additional logs and exception handling for Helix Participant
new f04ac5f Merge pull request #200 from yasgun/develop
new abf24ff Ansibles for testing environment
new aa897d8 Fixing the bug of rabbitmq consumer threads being killed for unhandled exceptions
new a645e51 Improving batch queue validator logic
new 99d500a Adding recursive directory creation method to adaptors
new 6df7cbc Logging improvements
new 321b79e Logging improvements
new 0461052 Adding monitor logic to identify and remove stale ssh connections in the pool and reducing default sessions per connection to 1
new 5d667d4 Manually disconnecting stale connections
new 2de372e Setting default maximum sessions for a ssh connection to 1
new bb68c49 Setting max connection idle time to 10 minutes
new 93bfe76 Minor log level changes
new 2bbfd8c Merge branch 'develop' into staging
new c905ef5 Optimizing task retry logic
new 6c6cfdc Fixing NPE when fetching the curator client
new b4c3bab Adding missing emails to email monitor
new c1b12e5 Adding missing path separator for retry counter
new b64f33b implementation of DataParsingTask, CatalogEntry, and CatalogUtil
new 1447321 Catalog Graph implementation with Dijkstra shortest path algorithm
new e0486d4 Parser workflow manager and parser request implementation
new 4ff6b34 distribution of parser workflow manager
new 9b40364 changed the way of getting shortest path entries considering application and multiple operations
new 8a4eb0a avoid source vertex self loops
new 2af9090 Merge pull request #206 from Lahiru-J/staging
new e0554fe Fixing issues in task retry nodes
new 25a63e5 Accepting 0 byte files at output data staging
new 46fde14 Fixing the bug of task retry when the retry count is 1
new 6844273 Updating helix version
new dcb34e8 Fixing retry count not applying issue
new e2aedc5 Adding missing error log
new b4a57f7 Deleting intermediary monitoring nodes
new 521b36a Manually cleaning up stale workflows
new 591f997 Minor logging improvements
new 3c1717d Changing controller log levels
new f6f16ec Minor logging improvements
new dd79ce2 Retrying for job id in realtime monitor
new 6227c37 Fixing a minor bug in monitoring paths
new 422d866 Minor logging improvement
new d7ad156 Minor logging improvement
new 353e64b Fixing the bug of second retry count being 1
new 73942aa Removing unwanted zookeeper path creation inside orchestrator
new 656b3bf Adding prefix to monitoring paths
new 5c81823 Setting zookeeper auto purge configurations
new 0ad3b1b Adding mistakenly removed status subscriber
new 3e879e4 Fixing the bug of workflow cancellation being failed when they are deleted by the cleanup agent
new e642e7f Using MonitoringUtil to monitor paths
new bb7d3ca Temporary removing cleaning up command in CancellationCompletingTask
new 23631de Removing task failure when a job cancellation is failed
new 3f68a88 Creating cancellation workflow even though relevant workflows are not available
new f9db782 Skipping Failed workflows in cleanup agent
new a14e473 Stopping helix daemons before replacing binaries
new f3100aa Refactoring post workflow manager
new eb919bc Temporary stopping cleanup agent
new 274c73f Task retrying if the context load failed
new 15a605e Setting an expiry time of 30 minutes for jobs and workflows
new 5aecd2f Adding ls5 email to email monitoring config
new fa75599 Updating php stubs
new 8b10120 Adding NON_CRITICAL_FAIL status for job states
new 4f166fa Optimizing cleanup in MonitoringUtil
new a337eef Making testing pga branch from master -> staging
new 1532e5e Making testing pga branch from master -> staging
new 616ff18 fixing the issue in iam server url of testing ansibles
new e3b77ae Platform monitor initial version
new 2f94413 Adding email notifier
new cb3168b Refactoring platform monitor module
new 0758b75 Creating distribution and ansibles for platform monitor
new ae25487 Changing pga branch master -> staging in staging environment
new 7bc9208 Adding platform monitor dependency to distribution
new 2d9ae11 Externalizing monitor intervals
new b2b080c Removing occupied zookeeper connections in Participant Monitor
new d341aef Fixing a typo
new 8ec3f54 Making workflow operator a global variable
new f57cc7e Validating job status before putting into the queue
new e6fe205 Adding curator jars for email monitor distribution
new 96cb11b Adding task-core jars for email monitor distribution
new b7b0842 Adding an expiration time for email monitoring
new e105c7c Adding logs to experiment create and launch
new 2154128 Avoiding multiple initializations of WorkflowOperator in participant monitor
new d172f91 Removing stale modules
new ec22e48 Adding missing Host Scheduler
new ea882da Trying to remove empty
new 0fbe1b1 Adding maven enhancer for registry models
new 4f490eb Merge branch 'staging' of https://github.com/apache/airavata into staging
new 78a2216 Bringing db-event-manager back
new 711c2d7 Improving workflow cancellation logic
new a6ef239 Validating jobs for process
new 3c783ac Overriding default allocation project number
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