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Posted to issues@spark.apache.org by "Kumaresh C R (JIRA)" <ji...@apache.org> on 2017/11/14 08:58:00 UTC
[jira] [Created] (SPARK-22516) CSV Read breaks: When "multiLine" =
"true", if "comment" option is set as last line's first character
Kumaresh C R created SPARK-22516:
------------------------------------
Summary: CSV Read breaks: When "multiLine" = "true", if "comment" option is set as last line's first character
Key: SPARK-22516
URL: https://issues.apache.org/jira/browse/SPARK-22516
Project: Spark
Issue Type: Bug
Components: Spark Core
Affects Versions: 2.2.0
Reporter: Kumaresh C R
Try to read attached CSV file with following parse properties,
scala> *val csvFile = spark.read.option("header","true").option("inferSchema", "true").option("parserLib", "univocity").option("comment", "c").csv("hdfs://localhost:8020/text
CommentChar.csv"); *
csvFile: org.apache.spark.sql.DataFrame = [a: string, b: string]
scala> csvFile.show
+---+---+
| a| b|
+---+---+
+---+---+
Notice that it works fine.
If we add an option "multiLine" = "true", it fails with below exception,
scala> val csvFile = *spark.read.option("header","true").{color:red}{color:#d04437}option("multiLine","true"){color}{color}.option("inferSchema", "true").option("parserLib", "univocity").option("comment", "c").csv("hdfs://localhost:8020/textCommentChar.csv");*
17/11/14 14:26:17 ERROR Executor: Exception in task 0.0 in stage 8.0 (TID 8)
com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
Parser Configuration: CsvParserSettings:
Auto configuration enabled=true
Autodetect column delimiter=false
Autodetect quotes=false
Column reordering enabled=true
Empty value=null
Escape unquoted values=false
Header extraction enabled=null
Headers=null
Ignore leading whitespaces=false
Ignore trailing whitespaces=false
Input buffer size=128
Input reading on separate thread=false
Keep escape sequences=false
Keep quotes=false
Length of content displayed on error=-1
Line separator detection enabled=false
Maximum number of characters per column=-1
Maximum number of columns=20480
Normalize escaped line separators=true
Null value=
Number of records to read=all
Processor=none
Restricting data in exceptions=false
RowProcessor error handler=null
Selected fields=none
Skip empty lines=true
Unescaped quote handling=STOP_AT_DELIMITERFormat configuration:
CsvFormat:
Comment character=c
Field delimiter=,
Line separator (normalized)=\n
Line separator sequence=\r\n
Quote character="
Quote escape character=\
Quote escape escape character=null
Internal state when error was thrown: line=3, column=0, record=1, charIndex=19
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$12.next(Iterator.scala:444)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: Unable to skip 1 lines from line 2. End of input reached
at com.univocity.parsers.common.input.AbstractCharInputReader.skipLines(AbstractCharInputReader.java:262)
at com.univocity.parsers.common.AbstractParser.processComment(AbstractParser.java:96)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:440)
... 24 more
17/11/14 14:26:17 WARN TaskSetManager: Lost task 0.0 in stage 8.0 (TID 8, localhost, executor driver): com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
Parser Configuration: CsvParserSettings:
Auto configuration enabled=true
Autodetect column delimiter=false
Autodetect quotes=false
Column reordering enabled=true
Empty value=null
Escape unquoted values=false
Header extraction enabled=null
Headers=null
Ignore leading whitespaces=false
Ignore trailing whitespaces=false
Input buffer size=128
Input reading on separate thread=false
Keep escape sequences=false
Keep quotes=false
Length of content displayed on error=-1
Line separator detection enabled=false
Maximum number of characters per column=-1
Maximum number of columns=20480
Normalize escaped line separators=true
Null value=
Number of records to read=all
Processor=none
Restricting data in exceptions=false
RowProcessor error handler=null
Selected fields=none
Skip empty lines=true
Unescaped quote handling=STOP_AT_DELIMITERFormat configuration:
CsvFormat:
Comment character=c
Field delimiter=,
Line separator (normalized)=\n
Line separator sequence=\r\n
Quote character="
Quote escape character=\
Quote escape escape character=null
Internal state when error was thrown: line=3, column=0, record=1, charIndex=19
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$12.next(Iterator.scala:444)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: Unable to skip 1 lines from line 2. End of input reached
at com.univocity.parsers.common.input.AbstractCharInputReader.skipLines(AbstractCharInputReader.java:262)
at com.univocity.parsers.common.AbstractParser.processComment(AbstractParser.java:96)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:440)
... 24 more
17/11/14 14:26:17 ERROR TaskSetManager: Task 0 in stage 8.0 failed 1 times; aborting job
org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 8.0 failed 1 times, most recent failure: Lost task 0.0 in stage 8.0 (TID 8, localhost, executor driver): com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
Parser Configuration: CsvParserSettings:
Auto configuration enabled=true
Autodetect column delimiter=false
Autodetect quotes=false
Column reordering enabled=true
Empty value=null
Escape unquoted values=false
Header extraction enabled=null
Headers=null
Ignore leading whitespaces=false
Ignore trailing whitespaces=false
Input buffer size=128
Input reading on separate thread=false
Keep escape sequences=false
Keep quotes=false
Length of content displayed on error=-1
Line separator detection enabled=false
Maximum number of characters per column=-1
Maximum number of columns=20480
Normalize escaped line separators=true
Null value=
Number of records to read=all
Processor=none
Restricting data in exceptions=false
RowProcessor error handler=null
Selected fields=none
Skip empty lines=true
Unescaped quote handling=STOP_AT_DELIMITERFormat configuration:
CsvFormat:
Comment character=c
Field delimiter=,
Line separator (normalized)=\n
Line separator sequence=\r\n
Quote character="
Quote escape character=\
Quote escape escape character=null
Internal state when error was thrown: line=3, column=0, record=1, charIndex=19
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$12.next(Iterator.scala:444)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: Unable to skip 1 lines from line 2. End of input reached
at com.univocity.parsers.common.input.AbstractCharInputReader.skipLines(AbstractCharInputReader.java:262)
at com.univocity.parsers.common.AbstractParser.processComment(AbstractParser.java:96)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:440)
... 24 more
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1499)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1487)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1486)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1486)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:814)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:814)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1714)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1669)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1658)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:630)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2022)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2043)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2062)
at org.apache.spark.rdd.RDD$$anonfun$take$1.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
at org.apache.spark.rdd.RDD.take(RDD.scala:1327)
at org.apache.spark.sql.execution.datasources.csv.MultiLineCSVDataSource$.infer(CSVDataSource.scala:224)
at org.apache.spark.sql.execution.datasources.csv.CSVDataSource.inferSchema(CSVDataSource.scala:62)
at org.apache.spark.sql.execution.datasources.csv.CSVFileFormat.inferSchema(CSVFileFormat.scala:57)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$7.apply(DataSource.scala:177)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$7.apply(DataSource.scala:177)
at scala.Option.orElse(Option.scala:289)
at org.apache.spark.sql.execution.datasources.DataSource.getOrInferFileFormatSchema(DataSource.scala:176)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:366)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:178)
at org.apache.spark.sql.DataFrameReader.csv(DataFrameReader.scala:533)
at org.apache.spark.sql.DataFrameReader.csv(DataFrameReader.scala:412)
... 48 elided
Caused by: com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
Parser Configuration: CsvParserSettings:
Auto configuration enabled=true
Autodetect column delimiter=false
Autodetect quotes=false
Column reordering enabled=true
Empty value=null
Escape unquoted values=false
Header extraction enabled=null
Headers=null
Ignore leading whitespaces=false
Ignore trailing whitespaces=false
Input buffer size=128
Input reading on separate thread=false
Keep escape sequences=false
Keep quotes=false
Length of content displayed on error=-1
Line separator detection enabled=false
Maximum number of characters per column=-1
Maximum number of columns=20480
Normalize escaped line separators=true
Null value=
Number of records to read=all
Processor=none
Restricting data in exceptions=false
RowProcessor error handler=null
Selected fields=none
Skip empty lines=true
Unescaped quote handling=STOP_AT_DELIMITERFormat configuration:
CsvFormat:
Comment character=c
Field delimiter=,
Line separator (normalized)=\n
Line separator sequence=\r\n
Quote character="
Quote escape character=\
Quote escape escape character=null
Internal state when error was thrown: line=3, column=0, record=1, charIndex=19
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$12.next(Iterator.scala:444)
at scala.collection.Iterator$$anon$10.next(Iterator.scala:393)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:59)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:104)
at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:48)
at scala.collection.TraversableOnce$class.to(TraversableOnce.scala:310)
at scala.collection.AbstractIterator.to(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:302)
at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1336)
at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:289)
at scala.collection.AbstractIterator.toArray(Iterator.scala:1336)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.rdd.RDD$$anonfun$take$1$$anonfun$29.apply(RDD.scala:1354)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:2062)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:335)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.IllegalArgumentException: Unable to skip 1 lines from line 2. End of input reached
at com.univocity.parsers.common.input.AbstractCharInputReader.skipLines(AbstractCharInputReader.java:262)
at com.univocity.parsers.common.AbstractParser.processComment(AbstractParser.java:96)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:440)
... 24 more
scala>
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