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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2013/07/19 23:15:54 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #354
See <https://builds.apache.org/job/ctakes-trunk-compiletest/354/changes>
Changes:
[swu] some extra stuff for feature selection grid search and evaluations in general
[james-masanz] CTAKES-183 Update reference to resource that was moved to ctakes-core-res
[james-masanz] CTAKES-218 Have FileLocator also try the second method to resolve the file path if the first returns null (in addition to if the first throws an exception)
------------------------------------------
Started by an SCM change
Building remotely on ubuntu3 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-19T21:15:42.624 +0000'
U pom.xml
U ctakes-clinical-pipeline/pom.xml
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileLocator.java
U ctakes-core/src/test/java/org/apache/ctakes/core/ci/HyphenTextModifierImplTests.java
U ctakes-assertion/pom.xml
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/CrossValidateChi2GridSearch.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/TrainAttributeModels.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java
At revision 1505025
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@119b94e5:ubuntu3
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more
Jenkins build is back to normal : ctakes-trunk-compiletest #356
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/356/changes>
Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by "Coarr, Matt" <mc...@mitre.org>.
It's fixed and building correctly.
https://builds.apache.org/job/ctakes-trunk-compiletest/356/?auto_refresh=false
I had made some changes to update dependencies and then reverted back to the old version (all on 7/18), but in the mean time, a directory that was still needed was deleted. I'm very sorry for the mixup.
Matt
From: Steven Bethard <st...@Colorado.EDU>>
Reply-To: "dev@ctakes.apache.org<ma...@ctakes.apache.org>" <de...@ctakes.apache.org>>
Date: Monday, July 22, 2013 14:14
To: "dev@ctakes.apache.org<ma...@ctakes.apache.org>" <de...@ctakes.apache.org>>
Subject: Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Here's that error again:
On 22 Jul2013, at 12:05 , Apache Jenkins Server <je...@builds.apache.org>> wrote:
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
Could whoever is taking care of "ctakes-assertion-zoner" fix this? We haven't had a successful build since July 18…
Steve
Re: Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by Steven Bethard <st...@Colorado.EDU>.
Here's that error again:
On 22 Jul2013, at 12:05 , Apache Jenkins Server <je...@builds.apache.org> wrote:
> [ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
Could whoever is taking care of "ctakes-assertion-zoner" fix this? We haven't had a successful build since July 18…
Steve
Build failed in Jenkins: ctakes-trunk-compiletest #355
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/355/changes>
Changes:
[dligach] added a version of NP expander that simply returns the text of the enclosing NP
------------------------------------------
Started by an SCM change
Building remotely on ubuntu1 in workspace <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/>
Updating http://svn.apache.org/repos/asf/ctakes/trunk at revision '2013-07-22T18:04:56.456 +0000'
U ctakes-clinical-pipeline/pom.xml
U ctakes-temporal/pom.xml
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/feature/selection/Chi2FeatureSelection.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/ae/TimeAnnotator.java
U ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/EvaluationOfTimeSpans.java
A ctakes-temporal/src/main/java/org/apache/ctakes/temporal/data/analysis/CompareFeatureStructures.java
U ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/RouteFSM.java
U ctakes-core/src/test/java/org/apache/ctakes/core/ci/HyphenTextModifierImplTests.java
U ctakes-core/src/main/java/org/apache/ctakes/core/resource/FileLocator.java
U ctakes-assertion-zoner/pom.xml
D ctakes-assertion/lib
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/CrossValidateChi2GridSearch.java
U ctakes-assertion/src/main/java/org/apache/ctakes/assertion/train/TrainAttributeModels.java
U ctakes-distribution/src/main/assembly/bin.xml
U ctakes-relation-extractor/src/main/java/org/apache/ctakes/relationextractor/ae/IdentifiedAnnotationExpander.java
At revision 1505751
Parsing POMs
ERROR: Failed to parse POMs
hudson.util.IOException2: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@7036f932:ubuntu1
at hudson.FilePath.act(FilePath.java:861)
at hudson.FilePath.act(FilePath.java:838)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:862)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:620)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:592)
at hudson.model.Run.execute(Run.java:1568)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:477)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1229)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:997)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
at java.util.concurrent.FutureTask.run(FutureTask.java:166)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:679)
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 213, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-i2b2-1.2-SNAPSHOT.jar> @ line 192, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/med-facts-zoner-1.1.jar> @ line 199, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar> @ line 206, column 16
[WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar refers to a non-existing file <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-assertion/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar> @ line 213, column 16
[ERROR] 'dependencies.dependency.version' for net.sf.mastif:mastif-zoner:jar is missing. @ line 36, column 15
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.jdom:jdom2:jar -> duplicate declaration of version (?) @ line 91, column 17
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: com.lexicalscope.jewelcli:jewelcli:jar -> duplicate declaration of version (?) @ line 95, column 21
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:363)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1179)
... 11 more