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Posted to commits@airavata.apache.org by gi...@apache.org on 2026/03/30 18:54:57 UTC
(airavata) branch dependabot/maven/org.apache.logging.log4j-log4j-core-2.25.3 updated (cfc8c3ac0e -> aae7b64cc7)
This is an automated email from the ASF dual-hosted git repository.
github-bot pushed a change to branch dependabot/maven/org.apache.logging.log4j-log4j-core-2.25.3
in repository https://gitbox.apache.org/repos/asf/airavata.git
discard cfc8c3ac0e Bump org.apache.logging.log4j:log4j-core from 2.24.0 to 2.25.3
add 7d0d8fb1a9 feat(db): unify all databases into single airavata DB with schema migrations (#592)
add dea11f4ad3 feat: consolidate Airavata into single JVM with multiplexed Thrift port (#593)
add 49ac3ea9ee feat: extract transport-agnostic service layer from Thrift handlers (#594)
add b9960950f1 Extract thrift server into airavata-thrift-server module (#595)
add f1872d30d5 AIRAVATA-3981: Add integration health check — ServiceRegistry, monitoring endpoints, Tiltfile, test suite (#596)
add b8a3c53bd2 refactor: Phase 1 — reorganize leaf modules (common, messaging, security, sharing) (#597)
add 036898e315 refactor: Phase 2 — reorganize mid-tier modules (credential, storage, compute)
add 3a022a5523 refactor: Phase 3 — execution module, Testcontainers, Java 25 deps
add fdffece4ff refactor: unified transport servers — Spring module reorganization (#600)
add b41fbfa93f refactor: collapse servers, flatten modules, MapStruct, parallel tests (#601)
add f45854ae85 cleanup: lean core — remove dead code, fix cold-start, align docs (#602)
add dbb1ec5756 reliability: consolidate monitoring, migrate JDBC, fix JPA, harden startup/shutdown (#603)
add aae7b64cc7 Bump org.apache.logging.log4j:log4j-core from 2.24.0 to 2.25.3
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Summary of changes:
.devcontainer/Dockerfile | 70 -
.../database_scripts/init/00-accounts.sql | 3 -
.../database_scripts/init/01-databases.sql | 3617 -
.../init/02-sharing-registry-migrations.sql | 4 -
.../init/03-appcatalog-migrations.sql | 22 -
.../init/04-expcatalog-migrations.sql | 54 -
.../init/05-replica-catalog-migrations.sql | 27 -
.../init/06-cloud-execution-support-migration.sql | 84 -
.../init/07-cleanup-strategy-migration.sql | 4 -
.devcontainer/devcontainer.json | 27 -
.devcontainer/docker-compose-alt.yml | 279 -
.devcontainer/docker-compose.yml | 263 -
.devcontainer/gateway-storage/Dockerfile | 22 -
.devcontainer/gateway-storage/authorized_keys | 1 -
.devcontainer/keycloak/realm-default.json | 2649 -
.devcontainer/portals/Dockerfile | 33 -
.devcontainer/portals/pga-default.conf | 10 -
.devcontainer/portals/pga_config.php | 324 -
.devcontainer/proxy/http.conf | 104 -
.devcontainer/proxy/nginx.conf | 15 -
.devcontainer/proxy/stream.conf | 18 -
.gitignore | 10 +-
.run/APIServerStarter.run.xml | 11 -
.run/AgentServiceApplication.run.xml | 15 -
.run/FileServerApplication.run.xml | 9 -
.run/JobEngineStarter.run.xml | 9 -
.run/JobMonitorStarter.run.xml | 9 -
.run/ResearchServiceApplication.run.xml | 9 -
Dockerfile | 89 +-
INSTALL | 61 +-
README.md | 392 +-
RELEASE_NOTES | 15 +
Tiltfile | 58 +
.../airavata-agent => airavata-agent}/.gitignore | 0
.../airavata-agent => airavata-agent}/Dockerfile | 0
.../airavata-agent => airavata-agent}/Makefile | 0
.../airavata-agent => airavata-agent}/README.md | 0
.../agent-communication.proto | 0
.../airavata-agent => airavata-agent}/agent.go | 0
.../airavata-agent => airavata-agent}/agent.sh | 0
.../application/README.md | 0
.../application/alphafold2.sh | 0
.../application/gaussian16.sh | 0
.../application/gromacs.sh | 0
.../application/namd.sh | 0
.../application/pmemd_cuda.sh | 0
.../application/pmemd_mpi.sh | 0
.../application/psi4.sh | 0
.../airavata-agent => airavata-agent}/go.mod | 0
.../airavata-agent => airavata-agent}/kernel.py | 0
.../pkg/jupyter.go | 0
.../pkg/python.go | 0
.../airavata-agent => airavata-agent}/pkg/shell.go | 0
.../pkg/tunnel.go | 0
.../airavata-agent => airavata-agent}/pkg/types.go | 0
.../protos/agent-communication.pb.go | 0
.../protos/agent-communication_grpc.pb.go | 0
.../agent-service/.gitignore | 0
airavata-api/agent-service/pom.xml | 216 +
.../connection/service/config/AgentProperties.java | 94 +
.../service/config/AgentServiceConfig.java | 31 +
.../service/config/ClusterApplicationConfig.java | 0
.../service/controllers/AgentController.java | 0
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.../service/controllers/PlanController.java | 108 +
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.../service/db/entity/AgentExecutionStatus.java | 0
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.../agent/connection/service/db/repo/PlanRepo.java | 0
.../service/handlers/AgentConnectionHandler.java | 675 +
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.../connection/service/handlers/FuseFSHandler.java | 0
.../connection/service/handlers/PlanHandler.java | 0
.../models/AgentAsyncCommandExecutionRequest.java | 0
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.../service/models/AgentCommandExecutionAck.java | 0
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.../models/AgentCommandExecutionResponse.java | 0
.../service/models/AgentEnvSetupAck.java | 0
.../service/models/AgentEnvSetupRequest.java | 0
.../service/models/AgentEnvSetupResponse.java | 0
.../service/models/AgentInfoResponse.java | 0
.../service/models/AgentJupyterExecutionAck.java | 0
.../models/AgentJupyterExecutionRequest.java | 0
.../models/AgentJupyterExecutionResponse.java | 0
.../service/models/AgentKernelRestartAck.java | 0
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.../service/models/AgentKernelRestartResponse.java | 0
.../service/models/AgentLaunchRequest.java | 0
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.../service/models/AgentPythonExecutionAck.java | 0
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.../service/models/AgentTerminateResponse.java | 0
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.../service/models/AgentTunnelCreateRequest.java | 0
.../service/models/AgentTunnelCreateResponse.java | 0
.../models/AgentTunnelTerminateRequest.java | 0
.../models/AgentTunnelTerminateResponse.java | 0
.../connection/service/models/AsyncCommand.java | 0
.../connection/service/models/DirectoryInfo.java | 0
.../service/models/ExperimentStorageResponse.java | 0
.../agent/connection/service/models/FileInfo.java | 0
.../service/services/AiravataFileService.java | 181 +
.../service/services/AiravataService.java | 118 +
.../src/main}/proto/agent-communication.proto | 0
.../src/main}/proto/airavata-fuse.proto | 0
.../agent-service/src/main/resources/log4j2.xml | 38 +
airavata-api/file-server/pom.xml | 72 +
.../file/server/FileServerConfiguration.java | 36 +
.../file/server/config/FileServerConfig.java | 27 +
.../file/server/controller/FileController.java | 108 +
.../file/server/model/AiravataDirectory.java | 84 +
.../airavata/file/server/model/AiravataFile.java | 74 +
.../file/server/model/FileUploadResponse.java | 0
.../file/server/service/AirvataFileService.java | 160 +
.../file/server/service/ProcessDataManager.java | 95 +
.../file-server/src/main/resources/log4j2.xml | 38 +
airavata-api/pom.xml | 273 +-
.../research-service/README.md | 0
airavata-api/research-service/pom.xml | 207 +
.../src/main/compose/dbinit/01-init-db.sql | 9 +
.../src/main/compose/docker-compose.yaml | 0
.../airavata/research/service/AiravataService.java | 51 +
.../service/config/DevDataInitializer.java | 213 +
.../service/config/ResearchProperties.java | 82 +
.../service/config/ResearchServiceConfig.java | 33 +
.../controller/GlobalExceptionController.java | 0
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.../airavata/research/service/enums/StateEnum.java | 0
.../research/service/enums/StatusEnum.java | 0
.../research/service/exception/ErrorResponse.java | 0
.../service/exception/GlobalExceptionHandler.java | 0
.../research/service/handlers/ProjectHandler.java | 141 +
.../service/handlers/ResearchHubHandler.java | 157 +
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.../research/service/handlers/SessionHandler.java | 119 +
.../service/model/entity/DatasetResource.java | 0
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.../research/service/model/entity/Project.java | 149 +
.../service/model/entity/RepositoryResource.java | 0
.../research/service/model/entity/Resource.java | 0
.../service/model/entity/ResourceStar.java | 0
.../research/service/model/entity/Session.java | 0
.../research/service/model/entity/Tag.java | 0
.../service/model/repo/ProjectRepository.java | 0
.../service/model/repo/ResourceRepository.java | 120 +
.../service/model/repo/ResourceStarRepository.java | 0
.../service/model/repo/SessionRepository.java | 0
.../research/service/model/repo/TagRepository.java | 40 +
.../src/main/proto/research-service.proto | 0
.../research-service/src/main/resources/log4j2.xml | 38 +
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airavata-api/src/main/docker/Dockerfile | 63 -
.../airavata/accountprovisioning/ConfigParam.java | 88 -
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.../InvalidUsernameException.java | 41 -
.../accountprovisioning/SSHAccountManager.java | 348 -
.../accountprovisioning/SSHAccountProvisioner.java | 85 -
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.../SSHAccountProvisionerProvider.java | 59 -
.../airavata/accountprovisioning/SSHUtil.java | 162 -
.../provisioner/IULdapSSHAccountProvisioner.java | 290 -
.../IULdapSSHAccountProvisionerProvider.java | 90 -
.../apache/airavata/agents/api/AdaptorParams.java | 43 -
.../java/org/apache/airavata/agents/api/Agent.java | 28 -
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.../api/server/handler/AiravataServerHandler.java | 7655 --
.../apache/airavata/api/server/util/Constants.java | 26 -
.../monitoring/ClusterStatusMonitorJob.java | 320 -
.../ClusterStatusMonitorJobScheduler.java | 68 -
.../common/config/AiravataServerProperties.java | 40 +
.../common/config/ApplicationSettings.java | 344 +
.../common/config/ConditionalOnServer.java | 31 +
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.../apache/airavata/common/util/AiravataUtils.java | 45 +
.../org/apache/airavata/common/util/IOUtil.java | 206 +
.../org/apache/airavata/common/util/JSONUtil.java | 147 +
.../apache/airavata/common/util/NameValidator.java | 67 +
.../java/org/apache/airavata/common/util/Pair.java | 76 +
.../apache/airavata/common/util/StringUtil.java | 479 +
.../airavata/common/util/ThriftClientPool.java | 258 +
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